NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1D5IH-3FZUH
confEVID 1D5IH-3FZUH
pdbIDA 1D5I
pdbIDB 3FZU
pdbChainA H
pdbChainB H
identity 0.686100006103516
indelSize 3
alignment <alignment>
<seq1>QVQLQQSGAELMKPGASVKISCKATG--YTFSSYWIEWVKQRPGHGLEWIGEILPGSGSTNYNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARGHSYYFYDGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK</seq1>
<seq2>EVQLVESGGGLAKPGGSLRLSCAASGFRFTFNNYYMDWVRQAPGQGLEWVSRISSSGDPTWYADSVKGRFTISRENAKNTLFLQMNSLRAEDTAVYYCASLTT----GSDSWGQGVLVTVSSASTKGPSVFPLAPS--SKSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK</seq2>
<ss_1> EEE EEE EEEEEEEE -- GGG EEEEEEEE EEEEEEEEE EEEEE EEEEEEE EEEEEEE GGG EEEEEEE EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEE EEEEEEE EEEEE </ss_1>
<ss_2> EEEEE EEE EEEEEEEE GGG EEEEEEE EEEEEEEE EEE EEEEEEE EEEEEEE GGG EEEEEEEEE ---- EEEE EEEEE -- EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEEGGG EEEEEEE EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1D5I</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1D5IH</entryIDChain>
<sequence>CKATG--YTFSS</sequence>
<secondary-structure>EEEE -- GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1807 CA CYS H 22 25.335 32.728 40.806 1.00 40.71 C </line>
<line>ATOM 1813 CA LYS H 23 25.657 30.824 44.136 1.00 44.62 C </line>
<line>ATOM 1822 CA ALA H 24 28.728 31.872 46.096 1.00 48.71 C </line>
<line>ATOM 1827 CA THR H 25 30.232 29.465 48.612 1.00 52.14 C </line>
<line>ATOM 1834 CA GLY H 26 33.179 29.372 51.008 1.00 53.29 C </line>
<line>ATOM 1838 CA TYR H 27 33.173 32.954 52.316 1.00 51.24 C </line>
<line>ATOM 1850 CA THR H 28 30.869 35.549 53.922 1.00 52.51 C </line>
<line>ATOM 1857 CA PHE H 29 28.689 36.569 50.990 1.00 51.09 C </line>
<line>ATOM 1868 CA SER H 30 27.564 39.827 52.612 1.00 49.93 C </line>
<line>ATOM 1874 CA SER H 31 30.786 41.840 52.705 1.00 48.47 C </line>
</atom-coordinate>
<distance-map>
<line> SER SER PHE THR TYR GLY THR ALA LYS CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 15.95 13.96 11.39 14.51 13.93 13.30 9.78 6.34 3.85 </line>
<line>LYS CA 14.87 12.51 9.44 12.05 11.31 10.29 6.54 3.79 </line>
<line>ALA CA 12.14 10.35 6.78 8.91 7.72 7.08 3.79 </line>
<line>THR CA 13.05 11.42 7.65 8.10 5.88 3.80 </line>
<line>GLY CA 12.81 11.98 8.48 7.21 3.81 </line>
<line>TYR CA 9.21 8.88 5.91 3.82 </line>
<line>THR CA 6.41 5.56 3.79 </line>
<line>PHE CA 5.93 3.81 </line>
<line>SER CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>CYS CA 426</line>
<line>LYS CA 349</line>
<line>ALA CA 365</line>
<line>THR CA 269</line>
<line>GLY CA 206</line>
<line>TYR CA 248</line>
<line>THR CA 263</line>
<line>PHE CA 344</line>
<line>SER CA 287</line>
<line>SER CA 277</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3FZU</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>3FZUH</entryIDChain>
<sequence>CAASGFRFTFNN</sequence>
<secondary-structure>EEEE GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1790 CA CYS H 22 34.953 -5.561 31.225 1.00 35.72 C </line>
<line>ATOM 1796 CA ALA H 23 37.083 -2.544 30.810 1.00 31.61 C </line>
<line>ATOM 1801 CA ALA H 24 39.391 -1.397 33.513 1.00 29.67 C </line>
<line>ATOM 1806 CA SER H 25 40.890 1.862 34.262 1.00 29.93 C </line>
<line>ATOM 1812 CA GLY H 26 42.401 3.571 37.182 1.00 27.08 C </line>
<line>ATOM 1816 CA PHE H 27 44.831 1.137 38.617 1.00 26.82 C </line>
<line>ATOM 1827 CA ARG H 28 47.929 2.688 40.059 1.00 27.41 C </line>
<line>ATOM 1838 CA PHE H 29 50.241 0.380 38.197 1.00 29.11 C </line>
<line>ATOM 1849 CA THR H 30 49.406 -1.135 34.992 1.00 32.03 C </line>
<line>ATOM 1856 CA PHE H 31 46.541 -3.529 34.435 1.00 31.60 C </line>
<line>ATOM 1867 CA ASN H 32 48.867 -6.409 33.946 1.00 31.15 C </line>
<line>ATOM 1875 CA ASN H 33 49.919 -6.335 37.550 1.00 29.56 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASN PHE THR PHE ARG PHE GLY SER ALA ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 16.27 14.20 12.19 15.58 17.82 17.73 14.04 13.20 9.98 6.50 3.72 </line>
<line>ALA CA 14.99 12.79 10.18 13.09 15.37 15.18 11.60 10.31 6.77 3.73 </line>
<line>ALA CA 12.31 10.73 7.52 10.13 11.95 11.51 7.88 6.87 3.66 </line>
<line>SER CA 12.63 11.50 7.81 9.06 10.25 9.16 5.92 3.71 </line>
<line>GLY CA 12.44 12.32 8.67 8.72 8.53 6.29 3.73 </line>
<line>PHE CA 9.10 9.75 6.49 6.26 5.48 3.75 </line>
<line>ARG CA 9.57 11.00 8.50 6.52 3.76 </line>
<line>PHE CA 6.75 8.13 6.57 3.64 </line>
<line>THR CA 5.82 5.40 3.77 </line>
<line>PHE CA 5.38 3.73 </line>
<line>ASN CA 3.76 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>CYS CA 397</line>
<line>ALA CA 335</line>
<line>ALA CA 361</line>
<line>SER CA 274</line>
<line>GLY CA 233</line>
<line>PHE CA 263</line>
<line>ARG CA 183</line>
<line>PHE CA 191</line>
<line>THR CA 224</line>
<line>PHE CA 314</line>
<line>ASN CA 278</line>
<line>ASN CA 270</line>
</n14>
</entryChain>
<parallel>
<x>-13.130999565124512</x>
<y>33.46099853515625</y>
<z>14.159000396728516</z>
</parallel>
<rotation>
<x>0.0949999988079071</x>
<y>0.4480000138282776</y>
<z>0.8889999985694885</z>
<x>0.1850000023841858</x>
<y>-0.8849999904632568</y>
<z>0.4259999990463257</z>
<x>0.9779999852180481</x>
<y>0.12399999797344208</y>
<z>-0.16699999570846558</z>
</rotation>
<rmsd>1.5632989406585693</rmsd>
<dmax>3.750035047531128</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3FZU</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>3FZUH</entryIDChain>
<sequence>ASLTT----GSDSW</sequence>
<secondary-structure>EEEE ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 2413 CA ALA H 99 35.608 -7.303 40.562 1.00 27.27 C </line>
<line>ATOM 2418 CA SER H 100 39.078 -6.128 41.559 1.00 26.47 C </line>
<line>ATOM 2424 CA LEU H 101 39.837 -7.773 44.891 1.00 26.02 C </line>
<line>ATOM 2432 CA THR H 102 43.546 -6.855 45.217 1.00 25.32 C </line>
<line>ATOM 2439 CA THR H 103 43.993 -5.342 48.582 1.00 27.32 C </line>
<line>ATOM 2446 CA GLY H 104 44.286 -1.593 48.262 1.00 26.71 C </line>
<line>ATOM 2450 CA SER H 105 42.618 -1.586 44.831 1.00 27.42 C </line>
<line>ATOM 2456 CA ASP H 106 39.133 -2.864 45.395 1.00 27.37 C </line>
<line>ATOM 2464 CA SER H 107 36.374 -2.137 42.818 1.00 29.48 C </line>
<line>ATOM 2470 CA TRP H 108 33.319 -3.742 41.506 1.00 26.96 C </line>
</atom-coordinate>
<distance-map>
<line> TRP SER ASP SER GLY THR THR LEU SER ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.34 5.69 7.45 10.00 12.93 11.77 9.21 6.07 3.80 </line>
<line>SER CA 6.23 4.98 5.04 6.62 9.62 8.61 5.82 3.79 </line>
<line>LEU CA 8.38 6.93 4.98 6.78 8.33 6.07 3.83 </line>
<line>THR CA 11.32 8.91 5.95 5.36 6.12 3.72 </line>
<line>THR CA 12.91 10.08 6.32 5.48 3.77 </line>
<line>GLY CA 13.06 9.62 6.03 3.81 </line>
<line>SER CA 10.11 6.58 3.75 </line>
<line>ASP CA 7.05 3.84 </line>
<line>SER CA 3.69 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 439</line>
<line>SER CA 406</line>
<line>LEU CA 318</line>
<line>THR CA 279</line>
<line>THR CA 177</line>
<line>GLY CA 159</line>
<line>SER CA 235</line>
<line>ASP CA 253</line>
<line>SER CA 285</line>
<line>TRP CA 330</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1D5I</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1D5IH</entryIDChain>
<sequence>ARGHSYYFYDGDYW</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 2396 CA ALA H 93 32.644 37.396 39.805 1.00 37.14 C </line>
<line>ATOM 2401 CA ARG H 94 33.559 38.106 43.407 1.00 40.84 C </line>
<line>ATOM 2412 CA GLY H 95 35.469 41.328 43.616 1.00 46.28 C </line>
<line>ATOM 2416 CA HIS H 96 36.347 43.503 46.641 1.00 55.37 C </line>
<line>ATOM 2426 CA SER H 97 35.111 43.972 50.290 1.00 64.26 C </line>
<line>ATOM 2432 CA TYR H 98 35.637 47.301 52.224 1.00 73.86 C </line>
<line>ATOM 2444 CA TYR H 99 39.171 48.400 51.356 1.00 79.54 C </line>
<line>ATOM 2456 CA PHE H 100 40.720 45.170 50.176 1.00 75.60 C </line>
<line>ATOM 2467 CA TYR H 100A 40.990 43.123 46.970 1.00 67.81 C </line>
<line>ATOM 2479 CA ASP H 100B 43.551 40.415 46.245 1.00 59.80 C </line>
<line>ATOM 2487 CA GLY H 100C 41.995 39.359 42.938 1.00 53.56 C </line>
<line>ATOM 2491 CA ASP H 101 38.852 37.632 41.634 1.00 53.24 C </line>
<line>ATOM 2499 CA TYR H 102 37.022 34.354 41.650 1.00 48.70 C </line>
<line>ATOM 2511 CA TRP H 103 35.137 34.012 38.378 1.00 38.54 C </line>
</atom-coordinate>
<distance-map>
<line> TRP TYR ASP GLY ASP TYR PHE TYR TYR SER HIS GLY ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.44 5.64 6.48 10.06 13.02 12.40 15.27 17.24 16.16 12.62 9.89 6.16 3.78 </line>
<line>ARG CA 6.67 5.40 5.60 8.54 10.64 9.65 12.12 14.17 12.91 9.18 6.88 3.75 </line>
<line>GLY CA 9.00 7.41 5.39 6.85 8.55 6.70 9.24 11.12 10.48 7.19 3.83 </line>
<line>HIS CA 12.64 10.44 8.11 7.92 7.85 4.67 5.87 7.36 6.79 3.88 </line>
<line>SER CA 15.53 13.07 11.36 11.08 10.01 6.80 5.74 6.10 3.89 </line>
<line>TYR CA 19.20 16.77 14.70 13.77 12.07 8.59 5.88 3.80 </line>
<line>TYR CA 19.79 17.21 14.51 12.67 10.44 7.10 3.77 </line>
<line>PHE CA 17.17 14.26 11.54 9.37 6.79 3.81 </line>
<line>TYR CA 13.82 11.00 7.95 5.61 3.80 </line>
<line>ASP CA 13.18 10.02 7.15 3.80 </line>
<line>GLY CA 9.82 7.17 3.82 </line>
<line>ASP CA 6.12 3.75 </line>
<line>TYR CA 3.79 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 467</line>
<line>ARG CA 434</line>
<line>GLY CA 367</line>
<line>HIS CA 302</line>
<line>SER CA 265</line>
<line>TYR CA 199</line>
<line>TYR CA 138</line>
<line>PHE CA 162</line>
<line>TYR CA 198</line>
<line>ASP CA 158</line>
<line>GLY CA 192</line>
<line>ASP CA 284</line>
<line>TYR CA 311</line>
<line>TRP CA 342</line>
</n14>
</entryChain>
<parallel>
<x>4.203999996185303</x>
<y>-44.12200164794922</y>
<z>1.2589999437332153</z>
</parallel>
<rotation>
<x>0.5059999823570251</x>
<y>0.8140000104904175</y>
<z>0.28600001335144043</z>
<x>0.8619999885559082</x>
<y>-0.4620000123977661</y>
<z>-0.20900000631809235</z>
<x>0.03799999877810478</x>
<y>-0.35199999809265137</y>
<z>0.9350000023841858</z>
</rotation>
<rmsd>2.923609972000122</rmsd>
<dmax>5.258977890014648</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3FZU</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>3FZUH</entryIDChain>
<sequence>PLAPS--SKSGG</sequence>
<secondary-structure>EE -- E</secondary-structure>
<atom-coordinate>
<line>ATOM 2611 CA PRO H 128 -1.116 4.713 32.468 1.00 37.85 C </line>
<line>ATOM 2618 CA LEU H 129 -2.224 4.701 36.057 1.00 38.97 C </line>
<line>ATOM 2626 CA ALA H 130 -4.578 7.696 35.885 1.00 38.06 C </line>
<line>ATOM 2631 CA PRO H 131 -4.650 10.354 38.596 1.00 35.91 C </line>
<line>ATOM 2638 CA SER H 132 -8.112 10.468 40.082 1.00 37.57 C </line>
<line>ATOM 2644 CA SER H 133 -9.044 9.134 43.456 1.00 38.71 C </line>
<line>ATOM 2650 CA LYS H 134 -5.326 8.520 43.467 1.00 39.18 C </line>
<line>ATOM 2655 CA SER H 135 -5.453 11.453 45.920 1.00 39.24 C </line>
<line>ATOM 2661 CA GLY H 138 -5.423 14.776 49.725 1.00 41.74 C </line>
<line>ATOM 2665 CA GLY H 139 -3.745 17.975 48.812 1.00 41.52 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLY SER LYS SER SER PRO ALA LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 21.21 20.44 15.66 12.38 14.25 11.83 9.05 5.71 3.76 </line>
<line>LEU CA 18.47 17.28 12.38 8.89 11.00 9.17 6.65 3.81 </line>
<line>ALA CA 16.54 15.57 10.75 7.66 8.91 6.15 3.80 </line>
<line>PRO CA 12.78 12.00 7.45 5.25 6.66 3.77 </line>
<line>SER CA 12.31 10.90 6.49 4.80 3.75 </line>
<line>SER CA 11.62 9.18 4.93 3.77 </line>
<line>LYS CA 10.98 8.85 3.83 </line>
<line>SER CA 7.34 5.05 </line>
<line>GLY CA 3.73 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>PRO CA 318</line>
<line>LEU CA 315</line>
<line>ALA CA 273</line>
<line>PRO CA 277</line>
<line>SER CA 197</line>
<line>SER CA 142</line>
<line>LYS CA 204</line>
<line>SER CA 171</line>
<line>GLY CA 105</line>
<line>GLY CA 113</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1D5I</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1D5IH</entryIDChain>
<sequence>PLAPSSKSTSGG</sequence>
<secondary-structure>EE E</secondary-structure>
<atom-coordinate>
<line>ATOM 2650 CA PRO H 123 29.071 15.581 0.280 1.00 28.26 C </line>
<line>ATOM 2657 CA LEU H 124 32.093 17.706 -0.645 1.00 27.26 C </line>
<line>ATOM 2665 CA ALA H 125 33.381 15.245 -3.331 1.00 34.32 C </line>
<line>ATOM 2670 CA PRO H 126 37.073 14.776 -4.126 1.00 47.24 C </line>
<line>ATOM 2677 CA SER H 127 38.767 16.123 -7.221 1.00 63.43 C </line>
<line>ATOM 2683 CA SER H 128 36.733 18.476 -9.448 1.00 77.31 C </line>
<line>ATOM 2689 CA LYS H 129 37.645 16.841 -12.768 1.00 85.55 C </line>
<line>ATOM 2698 CA SER H 130 40.647 14.838 -11.447 1.00 88.69 C </line>
<line>ATOM 2704 CA THR H 131 41.425 11.652 -9.445 1.00 89.33 C </line>
<line>ATOM 2711 CA SER H 132 45.239 11.731 -9.727 1.00 87.03 C </line>
<line>ATOM 2717 CA GLY H 133 46.768 14.650 -7.806 1.00 79.52 C </line>
<line>ATOM 2721 CA GLY H 134 48.761 13.064 -4.950 1.00 69.83 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLY SER THR SER LYS SER SER PRO ALA LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 20.53 19.48 19.40 16.21 16.49 15.66 12.72 12.27 9.17 5.63 3.81 </line>
<line>LEU CA 17.83 16.61 17.06 14.18 14.07 13.36 9.98 9.50 6.75 3.86 </line>
<line>ALA CA 15.62 14.13 13.92 10.72 10.90 10.48 7.69 6.70 3.81 </line>
<line>PRO CA 11.84 10.37 10.36 7.55 8.15 8.90 6.49 3.78 </line>
<line>SER CA 10.70 8.16 8.21 5.66 4.80 5.70 3.83 </line>
<line>SER CA 13.94 10.86 10.86 8.28 5.71 3.81 </line>
<line>LYS CA 14.11 10.61 9.65 7.23 3.84 </line>
<line>SER CA 10.54 7.12 5.81 3.84 </line>
<line>THR CA 8.72 6.34 3.83 </line>
<line>SER CA 6.08 3.81 </line>
<line>GLY CA 3.83 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>PRO CA 300</line>
<line>LEU CA 302</line>
<line>ALA CA 285</line>
<line>PRO CA 280</line>
<line>SER CA 204</line>
<line>SER CA 144</line>
<line>LYS CA 110</line>
<line>SER CA 135</line>
<line>THR CA 183</line>
<line>SER CA 145</line>
<line>GLY CA 135</line>
<line>GLY CA 127</line>
</n14>
</entryChain>
<parallel>
<x>-42.275001525878906</x>
<y>-6.327000141143799</y>
<z>45.19900131225586</z>
</parallel>
<rotation>
<x>-0.02199999988079071</x>
<y>0.8659999966621399</y>
<z>0.5</z>
<x>-0.6190000176429749</x>
<y>0.38100001215934753</y>
<z>-0.6869999766349792</z>
<x>0.7850000262260437</x>
<y>0.3240000009536743</y>
<z>-0.5270000100135803</z>
</rotation>
<rmsd>2.349832057952881</rmsd>
<dmax>4.398458003997803</dmax>
</indel>