1D5IL-2GJJA | |
confEVID | 1D5IL-2GJJA |
pdbIDA | 1D5I |
pdbIDB | 2GJJ |
pdbChainA | L |
pdbChainB | A |
identity | 0.293900012969971 |
indelSize | 3 |
alignment | <alignment> <seq1>-DIKMTQSPSSMYASLGERVTITCKASQDIN------SYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQLK-SGTASVVCLLNNFYPREAKVQWKVD-----NALQ----------------SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTH-------QGLSSPVTKSFNR</seq1> <seq2>ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIK----RGEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD---TSS--STAFMQLNSLTSEDS--ADYYCVRSGNYEEYAMDYWGQGTSVTVS-</seq2> <ss_1>- EEEEE EEE EEEEEE ------ EEEEEEE EEEEE EEE EEEEEEEEEEEEEEE GGG EEEEEEE EEEE EEEEE HHHHH- EEEEEEEEEEEEE EEEEEE ----- ---------------- EEEEE EEEEEEEEEEEHHHHH EEEEEE ------- EEEEE </ss_1> <ss_2> EEEEE EEEE EEEEEE EEE EEEEEEEEE EEEEE EEE EEEEEEEEEEEEEEE GGG EEEEEEE EEEEEE---- EEE EEEEEEEE GGGEEEEEEEE EEEEEEE EEEEEHHHH EEEEEEE--- --EEEEEEE GGG --EEEEEEEE GGG EEEE -</ss_2> </alignment> |
indel | <indel> <confEVID></confEVID> <index>0</index> <entryChain> <pdbID>1D5I</pdbID> <pdbChain>L</pdbChain> <entryIDChain>1D5IL</entryIDChain> <sequence>DEQLK-SGTAS</sequence> <secondary-structure>HHHHH- EEEE</secondary-structure> <atom-coordinate> <line>ATOM 951 CA ASP L 122 23.055 17.125 -7.183 1.00 42.59 C </line> <line>ATOM 959 CA GLU L 123 21.405 15.956 -3.995 1.00 44.08 C </line> <line>ATOM 968 CA GLN L 124 21.398 19.576 -2.724 1.00 39.87 C </line> <line>ATOM 977 CA LEU L 125 20.454 20.907 -6.195 1.00 44.82 C </line> <line>ATOM 985 CA LYS L 126 17.166 19.022 -5.723 1.00 53.84 C </line> <line>ATOM 994 CA SER L 127 16.230 21.219 -2.747 1.00 56.17 C </line> <line>ATOM 1000 CA GLY L 128 16.633 24.425 -4.665 1.00 50.74 C </line> <line>ATOM 1004 CA THR L 129 19.937 25.750 -3.359 1.00 44.82 C </line> <line>ATOM 1011 CA ALA L 130 23.570 25.438 -4.305 1.00 38.45 C </line> <line>ATOM 1016 CA SER L 131 26.523 25.845 -1.897 1.00 32.95 C </line> </atom-coordinate> <distance-map> <line> SER ALA THR GLY SER LYS LEU GLN GLU ASP </line> <line> CA CA CA CA CA CA CA CA CA CA </line> <line>ASP CA 10.77 8.81 9.94 10.04 9.11 6.36 4.70 5.35 3.78 </line> <line>GLU CA 11.33 9.73 9.92 9.74 7.49 5.51 5.50 3.84 </line> <line>GLN CA 8.14 6.45 6.38 7.07 5.42 5.22 3.84 </line> <line>LEU CA 8.93 5.81 5.64 5.41 5.46 3.82 </line> <line>LYS CA 12.20 9.18 7.65 5.53 3.82 </line> <line>SER CA 11.32 8.61 5.89 3.76 </line> <line>GLY CA 10.37 7.02 3.79 </line> <line>THR CA 6.75 3.77 </line> <line>ALA CA 3.83 </line> <line>SER CA </line> </distance-map> <n14> <line>ASP CA 178</line> <line>GLU CA 128</line> <line>GLN CA 182</line> <line>LEU CA 204</line> <line>LYS CA 139</line> <line>SER CA 140</line> <line>GLY CA 164</line> <line>THR CA 219</line> <line>ALA CA 310</line> <line>SER CA 336</line> </n14> </entryChain> <entryChain> <pdbID>2GJJ</pdbID> <pdbChain>A</pdbChain> <entryIDChain>2GJJA</entryIDChain> <sequence>PEVVKTGASVK</sequence> <secondary-structure> EE</secondary-structure> <atom-coordinate> <line>ATOM 971 CA PRO A 143 32.128 24.139 31.671 1.00 21.48 C </line> <line>ATOM 978 CA GLU A 144 29.963 21.684 29.769 1.00 24.41 C </line> <line>ATOM 987 CA VAL A 145 29.138 21.208 26.121 1.00 25.90 C </line> <line>ATOM 994 CA VAL A 146 26.173 18.818 25.746 1.00 28.30 C </line> <line>ATOM 1001 CA LYS A 147 23.901 17.670 22.922 1.00 28.81 C </line> <line>ATOM 1006 CA THR A 148 20.199 18.463 22.782 1.00 27.83 C </line> <line>ATOM 1013 CA GLY A 149 18.199 15.824 24.669 1.00 25.88 C </line> <line>ATOM 1017 CA ALA A 150 21.163 14.940 26.891 1.00 24.96 C </line> <line>ATOM 1022 CA SER A 151 21.675 15.474 30.622 1.00 24.42 C </line> <line>ATOM 1028 CA VAL A 152 24.374 17.087 32.733 1.00 23.44 C </line> <line>ATOM 1035 CA LYS A 153 25.332 16.920 36.426 1.00 22.27 C </line> </atom-coordinate> <distance-map> <line> LYS VAL SER ALA GLY THR LYS VAL VAL GLU PRO </line> <line> CA CA CA CA CA CA CA CA CA CA CA </line> <line>PRO CA 11.00 10.53 13.62 15.09 17.67 15.92 13.64 9.94 6.95 3.79 </line> <line>GLU CA 9.41 7.82 10.39 11.45 14.10 12.43 9.99 6.23 3.77 </line> <line>VAL CA 11.79 9.13 10.43 10.17 12.28 9.93 7.08 3.83 </line> <line>VAL CA 10.88 7.42 7.43 6.44 8.59 6.68 3.80 </line> <line>LYS CA 13.60 9.84 8.31 5.54 6.24 3.79 </line> <line>THR CA 14.66 10.88 8.52 5.50 3.81 </line> <line>GLY CA 13.80 10.23 6.90 3.81 </line> <line>ALA CA 10.59 7.00 3.80 </line> <line>SER CA 7.01 3.79 </line> <line>VAL CA 3.82 </line> <line>LYS CA </line> </distance-map> <n14> <line>PRO CA 229</line> <line>GLU CA 249</line> <line>VAL CA 208</line> <line>VAL CA 219</line> <line>LYS CA 161</line> <line>THR CA 166</line> <line>GLY CA 168</line> <line>ALA CA 194</line> <line>SER CA 253</line> <line>VAL CA 324</line> <line>LYS CA 335</line> </n14> </entryChain> <parallel> <x>-5.757999897003174</x> <y>1.777999997138977</y> <z>-31.875</z> </parallel> <rotation> <x>0.42899999022483826</x> <y>-0.5009999871253967</y> <z>-0.7509999871253967</z> <x>0.26100000739097595</x> <y>-0.7279999852180481</y> <z>0.6349999904632568</z> <x>0.8650000095367432</x> <y>0.46799999475479126</y> <z>0.1809999942779541</z> </rotation> <rmsd>3.5746281147003174</rmsd> <dmax>5.283660888671875</dmax> </indel> <indel> <confEVID></confEVID> <index>1</index> <entryChain> <pdbID>2GJJ</pdbID> <pdbChain>A</pdbChain> <entryIDChain>2GJJA</entryIDChain> <sequence>RLEIK----RGEVQ</sequence> <secondary-structure>EEEEE---- E</secondary-structure> <atom-coordinate> <line>ATOM 850 CA ARG A 109 24.212 48.387 35.661 1.00 22.71 C </line> <line>ATOM 861 CA LEU A 110 26.633 50.819 37.309 1.00 22.05 C </line> <line>ATOM 869 CA GLU A 111 29.063 52.236 34.734 1.00 23.18 C </line> <line>ATOM 878 CA ILE A 112 32.014 54.191 36.083 1.00 23.59 C </line> <line>ATOM 886 CA LYS A 113 34.422 56.496 34.387 1.00 23.73 C </line> <line>ATOM 895 CA ARG A 114 37.474 57.982 36.087 1.00 25.98 C </line> <line>ATOM 906 CA GLY A 115 36.552 61.596 35.256 1.00 28.12 C </line> <line>ATOM 910 CA GLU A 135 37.086 31.100 54.205 1.00 31.66 C </line> <line>ATOM 919 CA VAL A 136 33.656 29.921 52.899 1.00 27.15 C </line> <line>ATOM 926 CA GLN A 137 34.090 28.527 49.388 1.00 25.10 C </line> </atom-coordinate> <distance-map> <line> GLN VAL GLU GLY ARG LYS ILE GLU LEU ARG </line> <line> CA CA CA CA CA CA CA CA CA CA </line> <line>ARG CA 26.08 26.97 28.43 18.08 16.37 13.10 9.73 6.26 3.81 </line> <line>LEU CA 26.43 27.00 27.99 14.79 13.05 10.07 6.47 3.81 </line> <line>GLU CA 28.32 29.14 29.84 12.00 10.28 6.85 3.79 </line> <line>ILE CA 28.98 29.57 29.79 8.72 6.65 3.74 </line> <line>LYS CA 31.74 32.40 32.32 5.59 3.80 </line> <line>ARG CA 32.50 32.93 32.42 3.82 </line> <line>GLY CA 36.05 36.37 35.91 </line> <line>GLU CA 6.23 3.85 </line> <line>VAL CA 3.80 </line> <line>GLN CA </line> </distance-map> <n14> <line>ARG CA 360</line> <line>LEU CA 372</line> <line>GLU CA 282</line> <line>ILE CA 266</line> <line>LYS CA 178</line> <line>ARG CA 146</line> <line>GLY CA 115</line> <line>GLU CA 162</line> <line>VAL CA 280</line> <line>GLN CA 305</line> </n14> </entryChain> <entryChain> <pdbID>1D5I</pdbID> <pdbChain>L</pdbChain> <entryIDChain>1D5IL</entryIDChain> <sequence>KLEIKRTVAAPSVF</sequence> <secondary-structure>EEE EEE</secondary-structure> <atom-coordinate> <line>ATOM 803 CA LYS L 103 45.501 37.695 21.045 1.00 24.41 C </line> <line>ATOM 812 CA LEU L 104 48.779 35.824 21.694 1.00 23.38 C </line> <line>ATOM 820 CA GLU L 105 49.642 33.061 19.194 1.00 27.13 C </line> <line>ATOM 829 CA ILE L 106 52.686 30.810 18.372 1.00 31.76 C </line> <line>ATOM 837 CA LYS L 107 55.000 31.920 15.574 1.00 34.29 C </line> <line>ATOM 846 CA ARG L 108 56.212 29.463 12.949 1.00 33.27 C </line> <line>ATOM 857 CA THR L 109 57.291 29.591 9.289 1.00 36.62 C </line> <line>ATOM 864 CA VAL L 110 55.172 30.964 6.427 1.00 32.50 C </line> <line>ATOM 871 CA ALA L 111 53.239 28.198 4.630 1.00 32.02 C </line> <line>ATOM 876 CA ALA L 112 50.957 28.783 1.681 1.00 32.43 C </line> <line>ATOM 881 CA PRO L 113 47.494 27.216 1.494 1.00 30.95 C </line> <line>ATOM 888 CA SER L 114 46.630 24.177 -0.656 1.00 32.87 C </line> <line>ATOM 894 CA VAL L 115 43.342 25.234 -2.250 1.00 30.86 C </line> <line>ATOM 901 CA PHE L 116 40.406 23.070 -3.371 1.00 32.11 C </line> </atom-coordinate> <distance-map> <line> PHE VAL SER PRO ALA ALA VAL THR ARG LYS ILE GLU LEU LYS </line> <line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line> <line>LYS CA 28.91 26.51 25.59 22.27 22.00 20.48 18.78 18.52 15.75 12.39 10.30 6.48 3.83 </line> <line>LEU CA 29.34 26.74 25.29 22.00 21.33 19.22 17.25 16.28 13.12 9.56 7.17 3.82 </line> <line>GLU CA 26.35 23.68 21.95 18.76 18.08 15.77 14.07 12.99 9.75 6.57 3.87 </line> <line>ILE CA 26.14 23.32 21.04 18.02 16.90 14.00 12.20 10.26 6.61 3.80 </line> <line>LYS CA 25.50 22.32 19.83 16.63 14.81 11.69 9.20 7.08 3.79 </line> <line>ARG CA 23.60 20.36 17.46 14.57 12.45 8.92 6.77 3.82 </line> <line>THR CA 22.09 18.62 15.55 12.74 9.93 6.33 3.82 </line> <line>VAL CA 19.40 15.75 13.01 9.87 6.71 3.82 </line> <line>ALA CA 15.97 12.41 9.37 6.62 3.77 </line> <line>ALA CA 13.02 9.28 6.74 3.81 </line> <line>PRO CA 9.54 5.93 3.82 </line> <line>SER CA 6.88 3.80 </line> <line>VAL CA 3.82 </line> <line>PHE CA </line> </distance-map> <n14> <line>LYS CA 361</line> <line>LEU CA 414</line> <line>GLU CA 393</line> <line>ILE CA 347</line> <line>LYS CA 304</line> <line>ARG CA 262</line> <line>THR CA 222</line> <line>VAL CA 249</line> <line>ALA CA 271</line> <line>ALA CA 298</line> <line>PRO CA 351</line> <line>SER CA 287</line> <line>VAL CA 322</line> <line>PHE CA 283</line> </n14> </entryChain> <parallel> <x>-17.40399932861328</x> <y>20.415000915527344</y> <z>25.666000366210938</z> </parallel> <rotation> <x>0.5339999794960022</x> <y>0.6779999732971191</y> <z>-0.5049999952316284</z> <x>-0.6110000014305115</x> <y>0.7229999899864197</y> <z>0.3230000138282776</z> <x>-0.5839999914169312</x> <y>-0.13600000739097595</y> <z>-0.800000011920929</z> </rotation> <rmsd>10.195074081420898</rmsd> <dmax>17.425121307373047</dmax> </indel> <indel> <confEVID></confEVID> <index>2</index> <entryChain> <pdbID>2GJJ</pdbID> <pdbChain>A</pdbChain> <entryIDChain>2GJJA</entryIDChain> <sequence>TSEDS--ADYYC</sequence> <secondary-structure> GGG --EEEEE</secondary-structure> <atom-coordinate> <line>ATOM 1567 CA THR A 221 17.519 22.335 24.897 1.00 26.19 C </line> <line>ATOM 1574 CA SER A 222 19.133 25.602 23.773 1.00 26.44 C </line> <line>ATOM 1580 CA GLU A 223 16.983 27.458 26.356 1.00 26.71 C </line> <line>ATOM 1589 CA ASP A 224 18.990 25.639 29.056 1.00 23.80 C </line> <line>ATOM 1597 CA SER A 225 22.269 27.183 27.839 1.00 22.54 C </line> <line>ATOM 1603 CA ALA A 226 23.434 29.466 30.669 1.00 19.47 C </line> <line>ATOM 1608 CA ASP A 227 25.695 29.966 33.672 1.00 18.07 C </line> <line>ATOM 1616 CA TYR A 228 24.568 28.044 36.746 1.00 15.65 C </line> <line>ATOM 1628 CA TYR A 229 25.632 28.850 40.307 1.00 15.73 C </line> <line>ATOM 1640 CA CYS A 230 25.336 27.044 43.589 1.00 16.83 C </line> </atom-coordinate> <distance-map> <line> CYS TYR TYR ASP ALA SER ASP GLU SER THR </line> <line> CA CA CA CA CA CA CA CA CA CA </line> <line>THR CA 20.80 18.59 14.92 14.22 10.92 7.40 5.51 5.35 3.81 </line> <line>SER CA 20.81 18.06 14.28 12.65 9.00 5.37 5.29 3.84 </line> <line>GLU CA 19.16 16.47 12.88 11.65 8.02 5.50 3.82 </line> <line>ASP CA 15.92 13.45 9.80 9.22 6.08 3.82 </line> <line>SER CA 16.05 13.02 9.24 7.31 3.82 </line> <line>ALA CA 13.28 9.90 6.34 3.79 </line> <line>ASP CA 10.34 6.73 3.80 </line> <line>TYR CA 6.96 3.80 </line> <line>TYR CA 3.76 </line> <line>CYS CA </line> </distance-map> <n14> <line>THR CA 206</line> <line>SER CA 212</line> <line>GLU CA 255</line> <line>ASP CA 345</line> <line>SER CA 318</line> <line>ALA CA 358</line> <line>ASP CA 409</line> <line>TYR CA 479</line> <line>TYR CA 520</line> <line>CYS CA 560</line> </n14> </entryChain> <entryChain> <pdbID>1D5I</pdbID> <pdbChain>L</pdbChain> <entryIDChain>1D5IL</entryIDChain> <sequence>KADYEKHKVYAC</sequence> <secondary-structure>EHHHHH EEE</secondary-structure> <atom-coordinate> <line>ATOM 1420 CA LYS L 183 19.523 26.693 -7.785 1.00 51.26 C </line> <line>ATOM 1429 CA ALA L 184 18.346 29.011 -10.517 1.00 54.66 C </line> <line>ATOM 1434 CA ASP L 185 21.127 31.558 -10.407 1.00 57.15 C </line> <line>ATOM 1442 CA TYR L 186 23.601 28.638 -10.306 1.00 55.84 C </line> <line>ATOM 1454 CA GLU L 187 22.119 27.062 -13.395 1.00 62.33 C </line> <line>ATOM 1463 CA LYS L 188 22.342 30.496 -15.187 1.00 61.19 C </line> <line>ATOM 1472 CA HIS L 189 26.166 30.831 -15.089 1.00 55.85 C </line> <line>ATOM 1482 CA LYS L 190 29.083 28.603 -16.190 1.00 50.54 C </line> <line>ATOM 1491 CA VAL L 191 32.494 29.309 -14.686 1.00 47.50 C </line> <line>ATOM 1498 CA TYR L 192 32.848 29.154 -10.883 1.00 40.86 C </line> <line>ATOM 1510 CA ALA L 193 36.211 30.247 -9.529 1.00 35.95 C </line> <line>ATOM 1515 CA CYS L 194 37.858 30.752 -6.120 1.00 40.00 C </line> </atom-coordinate> <distance-map> <line> CYS ALA TYR VAL LYS HIS LYS GLU TYR ASP ALA LYS </line> <line> CA CA CA CA CA CA CA CA CA CA CA CA </line> <line>LYS CA 18.85 17.15 13.90 14.92 12.87 10.71 8.79 6.19 5.17 5.75 3.77 </line> <line>ALA CA 20.08 17.93 14.51 14.75 12.15 9.24 6.32 5.13 5.27 3.77 </line> <line>ASP CA 17.29 15.17 11.97 12.35 10.27 6.92 5.05 5.49 3.83 </line> <line>TYR CA 15.01 12.74 9.28 9.94 8.04 5.85 5.37 3.77 </line> <line>GLU CA 17.73 14.96 11.22 10.69 7.66 5.78 3.88 </line> <line>LYS CA 17.97 14.98 11.43 10.23 7.07 3.84 </line> <line>HIS CA 14.74 11.50 8.07 6.52 3.83 </line> <line>LYS CA 13.53 9.89 6.53 3.79 </line> <line>VAL CA 10.21 6.43 3.82 </line> <line>TYR CA 7.10 3.79 </line> <line>ALA CA 3.82 </line> <line>CYS CA </line> </distance-map> <n14> <line>LYS CA 233</line> <line>ALA CA 203</line> <line>ASP CA 251</line> <line>TYR CA 319</line> <line>GLU CA 253</line> <line>LYS CA 198</line> <line>HIS CA 244</line> <line>LYS CA 236</line> <line>VAL CA 267</line> <line>TYR CA 366</line> <line>ALA CA 366</line> <line>CYS CA 408</line> </n14> </entryChain> <parallel> <x>-3.819000005722046</x> <y>-1.7920000553131104</y> <z>40.89699935913086</z> </parallel> <rotation> <x>0.4059999883174896</x> <y>0.13199999928474426</y> <z>0.9039999842643738</z> <x>-0.6779999732971191</x> <y>0.7070000171661377</y> <z>0.20100000500679016</z> <x>-0.6129999756813049</x> <y>-0.6940000057220459</y> <z>0.37700000405311584</z> </rotation> <rmsd>1.5307060480117798</rmsd> <dmax>2.4410688877105713</dmax> </indel> |