NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1D5NC-1UNFX
confEVID 1D5NC-1UNFX
pdbIDA 1D5N
pdbIDB 1UNF
pdbChainA C
pdbChainB X
identity 0.362399995326996
indelSize 2
alignment <alignment>
<seq1>----SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESL----PEFANLPVEELITKLDQLPADKKTVL---------RNNAGGHANHSLFWKGLKKGT--TLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG--------DKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFW-NVVNWDEAAARFAAKK----</seq1>
<seq2>KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVTELDGKSLEEI------------------IVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYKASKLDADEDNKLVVIKSPNAVNPLVWG-----GYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALSA</seq2>
<ss_1>---- HHHHHHIIIIHHHHHHHHHHHHH ----HHHH GGG GGG HHHH---------HHHHHHHHHHHHHHH -- HHHHHHHHHHH HHHHHHHHHHHHHH EEEEEEEEE -------- EEEEEEEE EEE HHHH HHHHHHGGG- EEHHHHHHHHHH ----</ss_1>
<ss_2> HHHHHHIIIIHHHHHHHHHHHH HHHH------------------HHHH GGG HHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHH EEEEEEEEEEGGG EEEEEEE -----EEE EEE HHHH HHHHHHHHHH EEHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1D5N</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1D5NC</entryIDChain>
<sequence>IKEFW-NVVNW</sequence>
<secondary-structure>HHGGG- EEH</secondary-structure>
<atom-coordinate>
<line>ATOM 4766 CA ILE C 185 91.615 16.723 23.635 1.00 9.59 C </line>
<line>ATOM 4774 CA LYS C 186 95.111 16.099 22.260 1.00 14.17 C </line>
<line>ATOM 4783 CA GLU C 187 96.778 17.154 25.537 1.00 11.55 C </line>
<line>ATOM 4792 CA PHE C 188 94.595 14.582 27.278 1.00 9.54 C </line>
<line>ATOM 4803 CA TRP C 189 96.647 11.848 25.595 1.00 11.78 C </line>
<line>ATOM 4817 CA ASN C 190 99.617 13.242 27.541 1.00 12.43 C </line>
<line>ATOM 4825 CA VAL C 191 97.904 12.943 30.915 1.00 12.17 C </line>
<line>ATOM 4832 CA VAL C 192 95.434 10.065 30.676 1.00 11.49 C </line>
<line>ATOM 4839 CA ASN C 193 96.439 7.545 33.363 1.00 12.38 C </line>
<line>ATOM 4847 CA TRP C 194 96.851 4.231 31.526 1.00 10.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ASN VAL VAL ASN TRP PHE GLU LYS ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.68 14.22 10.42 10.34 9.56 7.28 5.17 5.52 3.81 </line>
<line>LYS CA 15.16 14.08 10.36 9.63 7.51 5.62 5.27 3.83 </line>
<line>GLU CA 14.24 12.40 8.86 6.92 5.23 5.31 3.80 </line>
<line>PHE CA 11.41 9.48 5.71 5.18 5.20 3.81 </line>
<line>TRP CA 9.66 8.88 5.52 5.58 3.81 </line>
<line>ASN CA 10.23 8.74 6.12 3.80 </line>
<line>VAL CA 8.80 6.11 3.80 </line>
<line>VAL CA 6.06 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ILE CA 434</line>
<line>LYS CA 355</line>
<line>GLU CA 372</line>
<line>PHE CA 483</line>
<line>TRP CA 417</line>
<line>ASN CA 333</line>
<line>VAL CA 410</line>
<line>VAL CA 474</line>
<line>ASN CA 399</line>
<line>TRP CA 380</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UNF</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>1UNFX</entryIDChain>
<sequence>ISVFMDKLVSW</sequence>
<secondary-structure>HHHHHH EEH</secondary-structure>
<atom-coordinate>
<line>ATOM 1526 CA ILE X 213 -17.230 31.804 52.713 1.00 14.10 C </line>
<line>ATOM 1534 CA SER X 214 -13.932 30.047 53.307 1.00 18.88 C </line>
<line>ATOM 1540 CA VAL X 215 -14.909 27.036 51.212 1.00 17.49 C </line>
<line>ATOM 1547 CA PHE X 216 -16.268 29.339 48.506 1.00 15.04 C </line>
<line>ATOM 1558 CA MET X 217 -12.868 30.958 48.200 1.00 14.94 C </line>
<line>ATOM 1566 CA ASP X 218 -10.887 27.728 48.634 1.00 16.85 C </line>
<line>ATOM 1574 CA LYS X 219 -12.870 25.528 46.245 1.00 17.80 C </line>
<line>ATOM 1583 CA LEU X 220 -15.500 27.385 44.197 1.00 17.00 C </line>
<line>ATOM 1591 CA VAL X 221 -14.281 30.783 42.978 1.00 15.88 C </line>
<line>ATOM 1598 CA SER X 222 -13.480 31.028 39.279 1.00 17.21 C </line>
<line>ATOM 1604 CA TRP X 223 -10.506 33.343 39.005 1.00 17.98 C </line>
</atom-coordinate>
<distance-map>
<line> TRP SER VAL LEU LYS ASP MET PHE VAL SER ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.35 13.97 10.22 9.75 10.01 8.57 6.33 4.97 5.51 3.78 </line>
<line>SER CA 15.07 14.07 10.36 9.62 8.45 6.04 5.30 5.39 3.80 </line>
<line>VAL CA 14.43 12.66 9.07 7.05 5.58 4.83 5.35 3.80 </line>
<line>PHE CA 11.81 9.79 6.05 4.79 5.58 5.62 3.78 </line>
<line>MET CA 9.79 8.94 5.41 5.98 5.77 3.81 </line>
<line>ASP CA 11.15 10.25 7.27 6.41 3.81 </line>
<line>LYS CA 10.91 8.90 6.35 3.82 </line>
<line>LEU CA 9.35 6.45 3.81 </line>
<line>VAL CA 6.05 3.79 </line>
<line>SER CA 3.78 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ILE CA 455</line>
<line>SER CA 356</line>
<line>VAL CA 359</line>
<line>PHE CA 484</line>
<line>MET CA 434</line>
<line>ASP CA 319</line>
<line>LYS CA 312</line>
<line>LEU CA 414</line>
<line>VAL CA 456</line>
<line>SER CA 384</line>
<line>TRP CA 389</line>
</n14>
</entryChain>
<parallel>
<x>110.69499969482422</x>
<y>-15.027999877929688</y>
<z>-21.739999771118164</z>
</parallel>
<rotation>
<x>0.593999981880188</x>
<y>-0.5889999866485596</y>
<z>-0.5479999780654907</z>
<x>-0.7900000214576721</x>
<y>-0.5540000200271606</y>
<z>-0.2619999945163727</z>
<x>-0.14900000393390656</x>
<y>0.5889999866485596</y>
<z>-0.7950000166893005</z>
</rotation>
<rmsd>0.6567040085792542</rmsd>
<dmax>1.0891029834747314</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1UNF</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>1UNFX</entryIDChain>
<sequence>PLVWG-----GYYPL</sequence>
<secondary-structure> -----EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 1250 CA PRO X 182 -22.121 48.030 42.868 1.00 20.09 C </line>
<line>ATOM 1257 CA LEU X 183 -23.965 48.929 39.642 1.00 24.72 C </line>
<line>ATOM 1265 CA VAL X 184 -26.108 51.376 41.587 1.00 25.46 C </line>
<line>ATOM 1272 CA TRP X 185 -23.210 53.455 42.917 1.00 35.23 C </line>
<line>ATOM 1286 CA GLY X 186 -21.513 53.732 40.322 1.00 32.56 C </line>
<line>ATOM 1290 CA GLY X 187 -17.970 54.182 39.155 1.00 23.50 C </line>
<line>ATOM 1294 CA TYR X 188 -17.648 50.544 40.303 1.00 21.14 C </line>
<line>ATOM 1306 CA TYR X 189 -17.261 47.480 38.132 1.00 17.99 C </line>
<line>ATOM 1318 CA PRO X 190 -18.188 44.253 39.898 1.00 15.32 C </line>
<line>ATOM 1325 CA LEU X 191 -15.495 41.560 39.552 1.00 14.33 C </line>
</atom-coordinate>
<distance-map>
<line> LEU PRO TYR TYR GLY GLY TRP VAL LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 9.84 6.21 6.81 5.74 8.30 6.27 5.53 5.36 3.82 </line>
<line>LEU CA 11.23 7.44 7.02 6.55 7.99 5.44 5.64 3.79 </line>
<line>VAL CA 14.60 10.79 10.27 8.60 8.95 5.32 3.81 </line>
<line>TRP CA 14.57 10.91 9.69 6.80 6.49 3.11 </line>
<line>GLY CA 13.60 10.05 7.87 5.01 3.76 </line>
<line>GLY CA 12.87 9.96 6.82 3.83 </line>
<line>TYR CA 9.27 6.33 3.78 </line>
<line>TYR CA 6.34 3.79 </line>
<line>PRO CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PRO CA 452</line>
<line>LEU CA 448</line>
<line>VAL CA 384</line>
<line>TRP CA 316</line>
<line>GLY CA 327</line>
<line>GLY CA 304</line>
<line>TYR CA 396</line>
<line>TYR CA 434</line>
<line>PRO CA 511</line>
<line>LEU CA 524</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1D5N</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1D5NC</entryIDChain>
<sequence>PLMGEAISGASGFPI</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 4475 CA PRO C 149 77.312 5.235 31.272 1.00 9.68 C </line>
<line>ATOM 4482 CA LEU C 150 76.830 3.613 34.692 1.00 10.72 C </line>
<line>ATOM 4490 CA MET C 151 73.352 5.162 34.709 1.00 10.72 C </line>
<line>ATOM 4498 CA GLY C 152 72.280 2.938 31.835 1.00 14.24 C </line>
<line>ATOM 4502 CA GLU C 153 71.039 3.603 28.303 1.00 17.45 C </line>
<line>ATOM 4511 CA ALA C 154 67.521 4.813 29.136 1.00 16.07 C </line>
<line>ATOM 4516 CA ILE C 155 68.823 7.672 31.294 1.00 13.74 C </line>
<line>ATOM 4524 CA SER C 156 72.240 8.497 29.813 1.00 11.54 C </line>
<line>ATOM 4530 CA GLY C 157 71.956 7.181 26.267 1.00 12.93 C </line>
<line>ATOM 4534 CA ALA C 158 75.140 5.193 26.894 1.00 14.12 C </line>
<line>ATOM 4539 CA SER C 159 76.183 2.012 28.673 1.00 16.68 C </line>
<line>ATOM 4545 CA GLY C 160 79.170 0.082 29.939 1.00 13.58 C </line>
<line>ATOM 4549 CA PHE C 161 81.780 0.127 32.684 1.00 13.53 C </line>
<line>ATOM 4560 CA PRO C 162 83.952 3.260 32.425 1.00 12.10 C </line>
<line>ATOM 4567 CA ILE C 163 87.643 2.494 31.891 1.00 12.71 C </line>
</atom-coordinate>
<distance-map>
<line> ILE PRO PHE GLY SER ALA GLY SER ILE ALA GLU GLY MET LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 10.71 7.02 6.93 5.64 4.29 4.89 7.58 6.20 8.83 10.03 7.13 5.56 5.24 3.82 </line>
<line>LEU CA 11.23 7.48 6.38 6.37 6.26 8.13 10.37 8.29 9.60 10.91 8.62 5.41 3.81 </line>
<line>MET CA 14.81 11.01 10.02 9.08 7.37 8.02 8.79 6.03 6.20 8.07 6.99 3.79 </line>
<line>GLY CA 15.37 11.69 9.94 7.70 5.11 6.14 7.01 5.92 5.89 5.78 3.80 </line>
<line>GLU CA 17.02 13.56 12.11 9.01 5.40 4.62 4.22 5.26 5.51 3.81 </line>
<line>ALA CA 20.44 16.83 15.42 12.60 9.12 7.95 5.79 6.02 3.81 </line>
<line>ILE CA 19.53 15.80 15.06 12.90 9.65 8.09 5.94 3.81 </line>
<line>SER CA 16.66 13.09 13.01 10.90 7.67 5.28 3.79 </line>
<line>GLY CA 17.31 14.04 13.69 10.77 7.10 3.81 </line>
<line>ALA CA 13.73 10.58 10.16 7.19 3.79 </line>
<line>SER CA 11.91 8.72 7.14 3.77 </line>
<line>GLY CA 9.02 6.26 3.79 </line>
<line>PHE CA 6.37 3.82 </line>
<line>PRO CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>PRO CA 410</line>
<line>LEU CA 421</line>
<line>MET CA 376</line>
<line>GLY CA 278</line>
<line>GLU CA 218</line>
<line>ALA CA 173</line>
<line>ILE CA 258</line>
<line>SER CA 306</line>
<line>GLY CA 236</line>
<line>ALA CA 296</line>
<line>SER CA 294</line>
<line>GLY CA 337</line>
<line>PHE CA 371</line>
<line>PRO CA 479</line>
<line>ILE CA 486</line>
</n14>
</entryChain>
<parallel>
<x>-97.21800231933594</x>
<y>48.11899948120117</y>
<z>9.10200023651123</z>
</parallel>
<rotation>
<x>0.6069999933242798</x>
<y>-0.7940000295639038</y>
<z>0.0020000000949949026</z>
<x>-0.33399999141693115</x>
<y>-0.2529999911785126</y>
<z>0.9079999923706055</z>
<x>-0.7210000157356262</x>
<y>-0.5519999861717224</y>
<z>-0.4189999997615814</z>
</rotation>
<rmsd>2.0912110805511475</rmsd>
<dmax>3.6556520462036133</dmax>
</indel>