NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1D5ND-1UNFX
confEVID 1D5ND-1UNFX
pdbIDA 1D5N
pdbIDB 1UNF
pdbChainA D
pdbChainB X
identity 0.362399995326996
indelSize 2
alignment <alignment>
<seq1>----SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESL----PEFANLPVEELITKLDQLPADKKTVL---------RNNAGGHANHSLFWKGLKKGTT--LQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG--------DKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFW-NVVNWDEAAARFAAKK----</seq1>
<seq2>KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVTELDGKSLEEI------------------IVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYKASKLDADEDNKLVVIKSPNAVNPLVWG-----GYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALSA</seq2>
<ss_1>---- HHHHHHIIIIHHHHHHHHHHHH ----HHHH GGG GGG HHHH---------HHHHHHHHHHHHHHH -- HHHHHHHHHHH HHHHHHHHHHHHHH EEEEEEEEE -------- EEEEEEEE EEE HHHH HHHHHHGGG- EEHHHHHHHHHH ----</ss_1>
<ss_2> HHHHHHIIIIHHHHHHHHHHHH HHHH------------------HHHH GGG HHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHH EEEEEEEEEEGGG EEEEEEE -----EEE EEE HHHH HHHHHHHHHH EEHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1D5N</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1D5ND</entryIDChain>
<sequence>IKEFW-NVVNW</sequence>
<secondary-structure>HHGGG- EEH</secondary-structure>
<atom-coordinate>
<line>ATOM 6410 CA ILE D 185 73.806 36.832 35.792 1.00 10.04 C </line>
<line>ATOM 6418 CA LYS D 186 73.725 39.930 38.021 1.00 13.93 C </line>
<line>ATOM 6427 CA GLU D 187 75.934 41.914 35.615 1.00 11.77 C </line>
<line>ATOM 6436 CA PHE D 188 73.525 41.045 32.795 1.00 11.64 C </line>
<line>ATOM 6447 CA TRP D 189 70.966 43.504 34.168 1.00 11.94 C </line>
<line>ATOM 6461 CA ASN D 190 73.552 46.215 33.483 1.00 12.96 C </line>
<line>ATOM 6469 CA VAL D 191 73.913 45.330 29.805 1.00 13.21 C </line>
<line>ATOM 6476 CA VAL D 192 70.566 43.928 28.669 1.00 13.47 C </line>
<line>ATOM 6483 CA ASN D 193 69.291 46.177 25.874 1.00 12.96 C </line>
<line>ATOM 6491 CA TRP D 194 65.734 47.093 26.886 1.00 13.31 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ASN VAL VAL ASN TRP PHE GLU LYS ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.80 14.36 10.56 10.40 9.67 7.43 5.18 5.51 3.82 </line>
<line>LYS CA 15.46 14.36 10.65 9.83 7.75 5.94 5.35 3.82 </line>
<line>GLU CA 14.39 12.54 9.01 7.04 5.36 5.41 3.81 </line>
<line>PHE CA 11.50 9.60 5.84 5.24 5.22 3.81 </line>
<line>TRP CA 9.66 8.87 5.53 5.57 3.81 </line>
<line>ASN CA 10.27 8.72 6.11 3.80 </line>
<line>VAL CA 8.86 6.13 3.80 </line>
<line>VAL CA 6.05 3.81 </line>
<line>ASN CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ILE CA 429</line>
<line>LYS CA 342</line>
<line>GLU CA 364</line>
<line>PHE CA 480</line>
<line>TRP CA 412</line>
<line>ASN CA 333</line>
<line>VAL CA 410</line>
<line>VAL CA 471</line>
<line>ASN CA 395</line>
<line>TRP CA 379</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UNF</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>1UNFX</entryIDChain>
<sequence>ISVFMDKLVSW</sequence>
<secondary-structure>HHHHHH EEH</secondary-structure>
<atom-coordinate>
<line>ATOM 1526 CA ILE X 213 -17.230 31.804 52.713 1.00 14.10 C </line>
<line>ATOM 1534 CA SER X 214 -13.932 30.047 53.307 1.00 18.88 C </line>
<line>ATOM 1540 CA VAL X 215 -14.909 27.036 51.212 1.00 17.49 C </line>
<line>ATOM 1547 CA PHE X 216 -16.268 29.339 48.506 1.00 15.04 C </line>
<line>ATOM 1558 CA MET X 217 -12.868 30.958 48.200 1.00 14.94 C </line>
<line>ATOM 1566 CA ASP X 218 -10.887 27.728 48.634 1.00 16.85 C </line>
<line>ATOM 1574 CA LYS X 219 -12.870 25.528 46.245 1.00 17.80 C </line>
<line>ATOM 1583 CA LEU X 220 -15.500 27.385 44.197 1.00 17.00 C </line>
<line>ATOM 1591 CA VAL X 221 -14.281 30.783 42.978 1.00 15.88 C </line>
<line>ATOM 1598 CA SER X 222 -13.480 31.028 39.279 1.00 17.21 C </line>
<line>ATOM 1604 CA TRP X 223 -10.506 33.343 39.005 1.00 17.98 C </line>
</atom-coordinate>
<distance-map>
<line> TRP SER VAL LEU LYS ASP MET PHE VAL SER ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.35 13.97 10.22 9.75 10.01 8.57 6.33 4.97 5.51 3.78 </line>
<line>SER CA 15.07 14.07 10.36 9.62 8.45 6.04 5.30 5.39 3.80 </line>
<line>VAL CA 14.43 12.66 9.07 7.05 5.58 4.83 5.35 3.80 </line>
<line>PHE CA 11.81 9.79 6.05 4.79 5.58 5.62 3.78 </line>
<line>MET CA 9.79 8.94 5.41 5.98 5.77 3.81 </line>
<line>ASP CA 11.15 10.25 7.27 6.41 3.81 </line>
<line>LYS CA 10.91 8.90 6.35 3.82 </line>
<line>LEU CA 9.35 6.45 3.81 </line>
<line>VAL CA 6.05 3.79 </line>
<line>SER CA 3.78 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ILE CA 455</line>
<line>SER CA 356</line>
<line>VAL CA 359</line>
<line>PHE CA 484</line>
<line>MET CA 434</line>
<line>ASP CA 319</line>
<line>LYS CA 312</line>
<line>LEU CA 414</line>
<line>VAL CA 456</line>
<line>SER CA 384</line>
<line>TRP CA 389</line>
</n14>
</entryChain>
<parallel>
<x>87.98100280761719</x>
<y>13.22700023651123</y>
<z>-14.87600040435791</z>
</parallel>
<rotation>
<x>-0.5680000185966492</x>
<y>0.6209999918937683</y>
<z>0.5410000085830688</z>
<x>-0.7760000228881836</x>
<y>-0.6230000257492065</y>
<z>-0.0989999994635582</z>
<x>0.2759999930858612</x>
<y>-0.4749999940395355</y>
<z>0.8349999785423279</z>
</rotation>
<rmsd>0.664887011051178</rmsd>
<dmax>1.0915240049362183</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1UNF</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>1UNFX</entryIDChain>
<sequence>PLVWG-----GYYPL</sequence>
<secondary-structure> -----EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 1250 CA PRO X 182 -22.121 48.030 42.868 1.00 20.09 C </line>
<line>ATOM 1257 CA LEU X 183 -23.965 48.929 39.642 1.00 24.72 C </line>
<line>ATOM 1265 CA VAL X 184 -26.108 51.376 41.587 1.00 25.46 C </line>
<line>ATOM 1272 CA TRP X 185 -23.210 53.455 42.917 1.00 35.23 C </line>
<line>ATOM 1286 CA GLY X 186 -21.513 53.732 40.322 1.00 32.56 C </line>
<line>ATOM 1290 CA GLY X 187 -17.970 54.182 39.155 1.00 23.50 C </line>
<line>ATOM 1294 CA TYR X 188 -17.648 50.544 40.303 1.00 21.14 C </line>
<line>ATOM 1306 CA TYR X 189 -17.261 47.480 38.132 1.00 17.99 C </line>
<line>ATOM 1318 CA PRO X 190 -18.188 44.253 39.898 1.00 15.32 C </line>
<line>ATOM 1325 CA LEU X 191 -15.495 41.560 39.552 1.00 14.33 C </line>
</atom-coordinate>
<distance-map>
<line> LEU PRO TYR TYR GLY GLY TRP VAL LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 9.84 6.21 6.81 5.74 8.30 6.27 5.53 5.36 3.82 </line>
<line>LEU CA 11.23 7.44 7.02 6.55 7.99 5.44 5.64 3.79 </line>
<line>VAL CA 14.60 10.79 10.27 8.60 8.95 5.32 3.81 </line>
<line>TRP CA 14.57 10.91 9.69 6.80 6.49 3.11 </line>
<line>GLY CA 13.60 10.05 7.87 5.01 3.76 </line>
<line>GLY CA 12.87 9.96 6.82 3.83 </line>
<line>TYR CA 9.27 6.33 3.78 </line>
<line>TYR CA 6.34 3.79 </line>
<line>PRO CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PRO CA 452</line>
<line>LEU CA 448</line>
<line>VAL CA 384</line>
<line>TRP CA 316</line>
<line>GLY CA 327</line>
<line>GLY CA 304</line>
<line>TYR CA 396</line>
<line>TYR CA 434</line>
<line>PRO CA 511</line>
<line>LEU CA 524</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1D5N</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1D5ND</entryIDChain>
<sequence>PLMGEAISGASGFPI</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 6119 CA PRO D 149 62.042 28.511 21.954 1.00 9.23 C </line>
<line>ATOM 6126 CA LEU D 150 61.423 29.191 18.250 1.00 9.51 C </line>
<line>ATOM 6134 CA MET D 151 62.017 25.453 17.717 1.00 9.24 C </line>
<line>ATOM 6142 CA GLY D 152 58.958 24.523 19.740 1.00 10.45 C </line>
<line>ATOM 6146 CA GLU D 153 58.319 22.472 22.860 1.00 12.11 C </line>
<line>ATOM 6155 CA ALA D 154 58.819 19.042 21.319 1.00 10.72 C </line>
<line>ATOM 6160 CA ILE D 155 62.369 19.910 20.281 1.00 10.21 C </line>
<line>ATOM 6168 CA SER D 156 63.508 22.550 22.796 1.00 10.60 C </line>
<line>ATOM 6174 CA GLY D 157 61.314 22.013 25.862 1.00 10.95 C </line>
<line>ATOM 6178 CA ALA D 158 60.231 25.637 25.477 1.00 9.58 C </line>
<line>ATOM 6183 CA SER D 159 58.157 27.811 23.137 1.00 12.70 C </line>
<line>ATOM 6189 CA GLY D 160 57.238 31.419 22.417 1.00 10.71 C </line>
<line>ATOM 6193 CA PHE D 161 58.775 34.401 20.627 1.00 10.37 C </line>
<line>ATOM 6204 CA PRO D 162 62.097 35.410 22.239 1.00 9.98 C </line>
<line>ATOM 6211 CA ILE D 163 62.104 38.966 23.574 1.00 10.35 C </line>
</atom-coordinate>
<distance-map>
<line> ILE PRO PHE GLY SER ALA GLY SER ILE ALA GLU GLY MET LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 10.58 6.91 6.86 5.63 4.12 4.89 7.62 6.20 8.77 10.02 7.15 5.51 5.23 3.82 </line>
<line>LEU CA 11.15 7.42 6.31 6.31 6.04 8.14 10.46 8.31 9.55 10.92 8.72 5.49 3.82 </line>
<line>MET CA 14.73 10.94 9.95 8.97 7.06 7.97 8.87 6.04 6.12 8.02 7.00 3.78 </line>
<line>GLY CA 15.27 11.60 9.92 7.59 4.80 5.98 7.02 5.83 5.76 5.71 3.79 </line>
<line>GLU CA 16.94 13.49 12.14 9.02 5.35 4.53 4.27 5.19 5.44 3.79 </line>
<line>ALA CA 20.32 16.72 15.37 12.53 8.98 7.92 5.97 6.04 3.80 </line>
<line>ILE CA 19.34 15.63 14.93 12.78 9.40 8.02 6.06 3.82 </line>
<line>SER CA 16.49 12.95 12.94 10.87 7.51 5.24 3.81 </line>
<line>GLY CA 17.12 13.90 13.69 10.81 7.14 3.80 </line>
<line>ALA CA 13.59 10.46 10.12 7.19 3.81 </line>
<line>SER CA 11.84 8.61 7.08 3.79 </line>
<line>GLY CA 9.05 6.29 3.80 </line>
<line>PHE CA 6.37 3.83 </line>
<line>PRO CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>PRO CA 417</line>
<line>LEU CA 422</line>
<line>MET CA 378</line>
<line>GLY CA 279</line>
<line>GLU CA 218</line>
<line>ALA CA 172</line>
<line>ILE CA 261</line>
<line>SER CA 308</line>
<line>GLY CA 239</line>
<line>ALA CA 295</line>
<line>SER CA 304</line>
<line>GLY CA 334</line>
<line>PHE CA 372</line>
<line>PRO CA 482</line>
<line>ILE CA 487</line>
</n14>
</entryChain>
<parallel>
<x>-80.84100341796875</x>
<y>22.993000030517578</y>
<z>19.777999877929688</z>
</parallel>
<rotation>
<x>-0.39100000262260437</x>
<y>-0.574999988079071</y>
<z>0.718999981880188</z>
<x>0.5320000052452087</x>
<y>-0.777999997138977</y>
<z>-0.3330000042915344</z>
<x>0.7509999871253967</x>
<y>0.2529999911785126</y>
<z>0.6100000143051147</z>
</rotation>
<rmsd>2.1174960136413574</rmsd>
<dmax>3.7340331077575684</dmax>
</indel>