NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DC3B-1VSVC
confEVID 1DC3B-1VSVC
pdbIDA 1DC3
pdbIDB 1VSV
pdbChainA B
pdbChainB C
identity 0.61489999294281
indelSize 3
alignment <alignment>
<seq1>TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA--GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPS--HKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK---</seq1>
<seq2>TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL</seq2>
<ss_1> EEEEEE HHHHHHHHHGGG EEE EEE - HHHHHHHHH EEEEE EEEE EEEEEE HHHH EEEE HHHGGHHHH EEEE GGG -- EE HHHHHHHHHHHHHHH EEEEEEE -- GGG EEE HHHHHHHH EEE EEEEEEEE HHHHHHHHH EEEE GGGG EEEE EEEEEEEEEEEE HHHHHHHHHHHHH ---</ss_1>
<ss_2> EEEEEE HHHHHHHHHGGG EEE EEE HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGGGG EEEE GGG EE HHHHHHHHHHHHHHH EEEEEEEE GGG EEE HHHHHHHH EEEEEE EEEEEEEE HHHHHHHHHHHH EEE GGGG EEEE EEEEEEEEEE HHHHHHHHHHHHHHGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DC3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DC3B</entryIDChain>
<sequence>AINDL-LDADY</sequence>
<secondary-structure>EEE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2717 CA ALA B 29 79.366 76.790 20.149 1.00 34.16 C </line>
<line>ATOM 2722 CA ILE B 30 78.296 76.550 16.510 1.00 32.26 C </line>
<line>ATOM 2730 CA ASN B 31 79.951 78.189 13.531 1.00 32.28 C </line>
<line>ATOM 2738 CA ASP B 32 78.456 78.471 10.049 1.00 34.02 C </line>
<line>ATOM 2746 CA LEU B 33 77.412 81.256 7.703 1.00 33.00 C </line>
<line>ATOM 2754 CA LEU B 34 73.802 81.180 8.951 1.00 34.52 C </line>
<line>ATOM 2762 CA ASP B 36 71.851 83.712 11.060 1.00 36.29 C </line>
<line>ATOM 2770 CA ALA B 37 71.205 82.575 14.634 1.00 32.63 C </line>
<line>ATOM 2775 CA ASP B 38 67.444 82.449 14.063 1.00 30.73 C </line>
<line>ATOM 2783 CA TYR B 39 67.946 80.400 10.871 1.00 26.10 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP ALA ASP LEU LEU ASP ASN ILE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.15 14.53 11.42 13.67 13.25 13.37 10.28 6.79 3.80 </line>
<line>ILE CA 12.40 12.59 9.49 11.07 9.94 10.02 6.74 3.78 </line>
<line>ASN CA 12.49 13.22 9.85 10.11 8.23 7.06 3.80 </line>
<line>ASP CA 10.72 12.38 9.51 8.49 5.50 3.79 </line>
<line>LEU CA 10.02 11.88 9.40 6.94 3.82 </line>
<line>LEU CA 6.21 8.26 6.40 3.83 </line>
<line>ASP CA 5.12 5.48 3.81 </line>
<line>ALA CA 5.43 3.81 </line>
<line>ASP CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 479</line>
<line>ILE CA 512</line>
<line>ASN CA 462</line>
<line>ASP CA 376</line>
<line>LEU CA 270</line>
<line>LEU CA 265</line>
<line>ASP CA 243</line>
<line>ALA CA 310</line>
<line>ASP CA 265</line>
<line>TYR CA 267</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VSV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1VSVC</entryIDChain>
<sequence>AINDPFMDVEY</sequence>
<secondary-structure>EEE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5264 CA ALA C 31 18.370 89.058 10.880 1.00 31.87 C </line>
<line>ATOM 5269 CA ILE C 32 22.125 88.914 11.490 1.00 32.62 C </line>
<line>ATOM 5277 CA ASN C 33 24.616 86.239 10.423 1.00 38.20 C </line>
<line>ATOM 5285 CA ASP C 34 28.161 85.739 11.726 1.00 42.63 C </line>
<line>ATOM 5293 CA PRO C 35 29.782 82.314 12.395 1.00 46.10 C </line>
<line>ATOM 5300 CA PHE C 36 32.665 83.898 14.318 1.00 44.18 C </line>
<line>ATOM 5311 CA MET C 37 30.586 85.031 17.288 1.00 38.91 C </line>
<line>ATOM 5319 CA ASP C 38 28.050 83.517 19.678 1.00 35.25 C </line>
<line>ATOM 5327 CA VAL C 39 24.866 85.463 20.392 1.00 30.21 C </line>
<line>ATOM 5334 CA GLU C 40 26.204 86.492 23.819 1.00 30.73 C </line>
<line>ATOM 5343 CA TYR C 41 29.292 88.015 22.247 1.00 25.58 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU VAL ASP MET PHE PRO ASP ASN ILE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.80 15.34 12.07 14.21 14.37 15.58 13.34 10.37 6.87 3.81 </line>
<line>ILE CA 12.96 13.21 9.93 11.46 10.97 12.01 10.15 6.82 3.81 </line>
<line>ASN CA 12.84 13.49 10.00 10.24 9.18 9.24 6.78 3.81 </line>
<line>ASP CA 10.82 12.27 9.28 8.26 6.11 5.51 3.85 </line>
<line>PRO CA 11.39 12.68 9.90 7.58 5.65 3.81 </line>
<line>PHE CA 9.55 11.78 10.01 7.08 3.80 </line>
<line>MET CA 5.93 8.00 6.52 3.80 </line>
<line>ASP CA 5.33 5.42 3.80 </line>
<line>VAL CA 5.44 3.82 </line>
<line>GLU CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 461</line>
<line>ILE CA 533</line>
<line>ASN CA 472</line>
<line>ASP CA 396</line>
<line>PRO CA 293</line>
<line>PHE CA 249</line>
<line>MET CA 265</line>
<line>ASP CA 258</line>
<line>VAL CA 310</line>
<line>GLU CA 258</line>
<line>TYR CA 277</line>
</n14>
</entryChain>
<parallel>
<x>50.472999572753906</x>
<y>-5.943999767303467</y>
<z>-1.4609999656677246</z>
</parallel>
<rotation>
<x>-0.22300000488758087</x>
<y>-0.15399999916553497</y>
<z>-0.9629999995231628</z>
<x>-0.37299999594688416</x>
<y>-0.8989999890327454</y>
<z>0.23000000417232513</z>
<x>-0.9010000228881836</x>
<y>0.4099999964237213</y>
<z>0.14300000667572021</z>
</rotation>
<rmsd>0.605908989906311</rmsd>
<dmax>1.1102620363235474</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1DC3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DC3B</entryIDChain>
<sequence>FDKYA--GQDIV</sequence>
<secondary-structure>GGG -- E</secondary-structure>
<atom-coordinate>
<line>ATOM 3521 CA PHE B 134 89.532 52.747 18.467 1.00 30.76 C </line>
<line>ATOM 3532 CA ASP B 135 92.115 50.797 20.482 1.00 34.20 C </line>
<line>ATOM 3540 CA LYS B 136 94.799 52.152 18.114 1.00 29.95 C </line>
<line>ATOM 3549 CA TYR B 137 94.362 55.806 19.096 1.00 28.79 C </line>
<line>ATOM 3561 CA ALA B 138 97.807 57.201 19.925 1.00 28.56 C </line>
<line>ATOM 3566 CA GLY B 140 96.881 60.582 21.408 1.00 28.15 C </line>
<line>ATOM 3570 CA GLN B 141 96.766 62.373 18.035 1.00 31.33 C </line>
<line>ATOM 3579 CA ASP B 142 95.122 65.809 18.246 1.00 34.94 C </line>
<line>ATOM 3587 CA ILE B 143 93.545 65.834 14.762 1.00 32.20 C </line>
<line>ATOM 3595 CA VAL B 144 91.543 62.745 13.760 1.00 29.54 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASP GLN GLY ALA TYR LYS ASP PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 11.23 14.18 14.21 12.05 11.14 9.51 5.75 5.31 3.81 </line>
<line>ASP CA 13.72 16.15 15.47 12.71 10.92 8.59 5.66 3.83 </line>
<line>LYS CA 11.91 14.14 13.66 10.41 9.29 6.15 3.81 </line>
<line>TYR CA 9.20 10.95 10.07 7.07 5.87 3.81 </line>
<line>ALA CA 10.39 10.92 9.17 5.60 3.81 </line>
<line>GLY CA 9.57 9.10 6.36 3.82 </line>
<line>GLN CA 6.76 5.75 3.81 </line>
<line>ASP CA 6.51 3.82 </line>
<line>ILE CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 363</line>
<line>ASP CA 248</line>
<line>LYS CA 239</line>
<line>TYR CA 275</line>
<line>ALA CA 205</line>
<line>GLY CA 236</line>
<line>GLN CA 292</line>
<line>ASP CA 349</line>
<line>ILE CA 425</line>
<line>VAL CA 463</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VSV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1VSVC</entryIDChain>
<sequence>NTEYDPSKFNVI</sequence>
<secondary-structure>GGG E</secondary-structure>
<atom-coordinate>
<line>ATOM 6062 CA ASN C 137 22.217 106.047 -7.136 1.00 33.63 C </line>
<line>ATOM 6070 CA THR C 138 19.217 106.991 -9.308 1.00 40.38 C </line>
<line>ATOM 6077 CA GLU C 139 20.984 105.205 -12.151 1.00 41.26 C </line>
<line>ATOM 6086 CA TYR C 140 20.198 101.942 -10.368 1.00 37.56 C </line>
<line>ATOM 6098 CA ASP C 141 17.824 99.638 -12.263 1.00 43.16 C </line>
<line>ATOM 6106 CA PRO C 142 16.032 96.873 -10.282 1.00 43.87 C </line>
<line>ATOM 6113 CA SER C 143 15.353 94.787 -13.390 1.00 47.36 C </line>
<line>ATOM 6119 CA LYS C 144 19.057 94.527 -14.225 1.00 46.47 C </line>
<line>ATOM 6128 CA PHE C 145 20.833 94.064 -10.883 1.00 39.28 C </line>
<line>ATOM 6139 CA ASN C 146 20.155 92.121 -7.686 1.00 39.36 C </line>
<line>ATOM 6147 CA VAL C 147 23.666 92.689 -6.340 1.00 37.31 C </line>
<line>ATOM 6154 CA ILE C 148 25.126 96.184 -6.038 1.00 32.52 C </line>
</atom-coordinate>
<distance-map>
<line> ILE VAL ASN PHE LYS SER PRO ASP TYR GLU THR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.34 13.46 14.09 12.63 13.89 14.60 11.50 9.31 5.60 5.23 3.82 </line>
<line>THR CA 12.74 15.27 14.99 13.12 13.40 13.44 10.65 8.05 5.25 3.79 </line>
<line>GLU CA 11.66 14.06 13.85 11.21 11.05 11.91 9.87 6.40 3.80 </line>
<line>TYR CA 8.73 10.67 10.18 7.92 8.44 9.15 6.56 3.81 </line>
<line>ASP CA 10.20 10.84 9.10 6.48 5.61 5.56 3.84 </line>
<line>PRO CA 10.06 9.56 6.81 5.59 5.50 3.80 </line>
<line>SER CA 12.31 11.10 7.92 6.07 3.81 </line>
<line>LYS CA 10.32 9.32 7.05 3.81 </line>
<line>PHE CA 6.81 5.53 3.80 </line>
<line>ASN CA 6.63 3.80 </line>
<line>VAL CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ASN CA 393</line>
<line>THR CA 282</line>
<line>GLU CA 265</line>
<line>TYR CA 309</line>
<line>ASP CA 250</line>
<line>PRO CA 262</line>
<line>SER CA 181</line>
<line>LYS CA 203</line>
<line>PHE CA 325</line>
<line>ASN CA 376</line>
<line>VAL CA 450</line>
<line>ILE CA 488</line>
</n14>
</entryChain>
<parallel>
<x>74.61199951171875</x>
<y>-42.88399887084961</y>
<z>29.724000930786133</z>
</parallel>
<rotation>
<x>-0.06199999898672104</x>
<y>-0.03400000184774399</y>
<z>-0.996999979019165</z>
<x>-0.27900001406669617</x>
<y>-0.9589999914169312</y>
<z>0.05000000074505806</z>
<x>-0.9580000042915344</x>
<y>0.28200000524520874</y>
<z>0.05000000074505806</z>
</rotation>
<rmsd>1.5463910102844238</rmsd>
<dmax>3.5134410858154297</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1DC3</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DC3B</entryIDChain>
<sequence>VDGPS--HKDWR</sequence>
<secondary-structure> -- G</secondary-structure>
<atom-coordinate>
<line>ATOM 3889 CA VAL B 185 66.920 67.660 -11.149 1.00 18.53 C </line>
<line>ATOM 3896 CA ASP B 186 69.668 66.965 -13.720 1.00 22.42 C </line>
<line>ATOM 3904 CA GLY B 187 72.246 69.531 -12.623 1.00 29.69 C </line>
<line>ATOM 3908 CA PRO B 188 76.024 70.326 -12.695 1.00 32.17 C </line>
<line>ATOM 3915 CA SER B 189 78.663 67.951 -11.281 1.00 33.21 C </line>
<line>ATOM 3921 CA HIS B 190 82.014 68.490 -13.099 1.00 37.24 C </line>
<line>ATOM 3931 CA LYS B 191 83.998 65.994 -11.019 1.00 35.19 C </line>
<line>ATOM 3940 CA ASP B 192 81.239 63.335 -11.114 1.00 30.29 C </line>
<line>ATOM 3948 CA TRP B 193 78.879 63.311 -14.099 1.00 22.71 C </line>
<line>ATOM 3962 CA ARG B 194 76.493 60.611 -12.890 1.00 18.35 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS HIS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 12.02 13.06 14.96 17.16 15.24 11.75 9.61 5.83 3.83 </line>
<line>ASP CA 9.36 9.92 12.40 14.61 12.46 9.37 7.26 3.80 </line>
<line>GLY CA 9.88 9.21 11.02 12.38 9.83 6.74 3.86 </line>
<line>PRO CA 9.73 7.70 8.86 9.23 6.28 3.82 </line>
<line>SER CA 7.82 5.43 5.29 5.69 3.85 </line>
<line>HIS CA 9.62 6.14 5.58 3.81 </line>
<line>LYS CA 9.42 6.55 3.83 </line>
<line>ASP CA 5.75 3.81 </line>
<line>TRP CA 3.80 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 170</line>
<line>ASP CA 187</line>
<line>GLY CA 175</line>
<line>PRO CA 151</line>
<line>SER CA 182</line>
<line>HIS CA 122</line>
<line>LYS CA 129</line>
<line>ASP CA 201</line>
<line>TRP CA 190</line>
<line>ARG CA 258</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VSV</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1VSVC</entryIDChain>
<sequence>VDGPSKGGKDWR</sequence>
<secondary-structure> G</secondary-structure>
<atom-coordinate>
<line>ATOM 6452 CA VAL C 189 52.379 95.176 16.622 1.00 61.91 C </line>
<line>ATOM 6459 CA ASP C 190 54.815 94.433 13.782 1.00 57.52 C </line>
<line>ATOM 6467 CA GLY C 191 53.525 91.123 12.460 1.00 63.32 C </line>
<line>ATOM 6471 CA PRO C 192 52.516 89.272 9.254 1.00 70.07 C </line>
<line>ATOM 6478 CA SER C 193 49.930 90.989 7.041 1.00 76.58 C </line>
<line>ATOM 6484 CA LYS C 194 46.753 89.229 5.906 1.00 80.56 C </line>
<line>ATOM 6493 CA GLY C 195 47.912 87.703 2.636 1.00 80.68 C </line>
<line>ATOM 6497 CA GLY C 196 51.483 88.899 3.028 1.00 76.03 C </line>
<line>ATOM 6501 CA LYS C 197 50.824 91.433 0.281 1.00 67.89 C </line>
<line>ATOM 6510 CA ASP C 198 50.754 94.844 1.972 1.00 50.49 C </line>
<line>ATOM 6518 CA TRP C 199 53.876 94.708 4.144 1.00 34.78 C </line>
<line>ATOM 6532 CA ARG C 200 53.555 98.273 5.442 1.00 29.15 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS GLY GLY LYS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.66 12.58 14.74 16.84 15.00 16.47 13.49 10.74 9.44 5.92 3.81 </line>
<line>ASP CA 9.27 9.69 12.50 14.39 12.54 14.74 12.41 9.01 7.24 3.79 </line>
<line>GLY CA 10.02 9.06 11.47 12.48 9.90 11.82 9.61 6.50 3.84 </line>
<line>PRO CA 9.83 7.58 9.34 9.38 6.32 8.21 6.67 3.81 </line>
<line>SER CA 8.29 6.15 6.42 6.83 4.78 5.85 3.81 </line>
<line>LYS CA 11.33 9.16 7.94 7.29 5.55 3.79 </line>
<line>GLY CA 12.31 9.32 7.71 5.29 3.79 </line>
<line>GLY CA 9.90 6.38 6.08 3.79 </line>
<line>LYS CA 8.99 5.91 3.81 </line>
<line>ASP CA 5.63 3.81 </line>
<line>TRP CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 166</line>
<line>ASP CA 182</line>
<line>GLY CA 167</line>
<line>PRO CA 157</line>
<line>SER CA 188</line>
<line>LYS CA 170</line>
<line>GLY CA 121</line>
<line>GLY CA 131</line>
<line>LYS CA 142</line>
<line>ASP CA 211</line>
<line>TRP CA 200</line>
<line>ARG CA 263</line>
</n14>
</entryChain>
<parallel>
<x>24.31800079345703</x>
<y>-24.489999771118164</y>
<z>-20.142000198364258</z>
</parallel>
<rotation>
<x>-0.16500000655651093</x>
<y>-0.14900000393390656</y>
<z>-0.9750000238418579</z>
<x>-0.32100000977516174</x>
<y>-0.9269999861717224</y>
<z>0.19599999487400055</z>
<x>-0.9330000281333923</x>
<y>0.3449999988079071</y>
<z>0.10499999672174454</z>
</rotation>
<rmsd>0.6713830232620239</rmsd>
<dmax>1.263929009437561</dmax>
</indel>