AHB821 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AHB821
Library	AH (Link to library)
Clone ID	AHB821 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15541-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHB8-A/AHB821Q.Seq.d/
Representative seq. ID	AHB821P (Link to Original site)
Representative DNA sequence	>AHB821 (AHB821Q) /CSM/AH/AHB8-A/AHB821Q.Seq.d/ ATACTCCAGTAAAAAATGGATCTTTATNAAGCTTTGGCCAATGCAAATNATCAATCTGAA AGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAAAACTTTCCATTA TTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTACAAATTCGTCAA TTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAAAGAAATGAAATT TTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATTAAAAATACTCTT TTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCTATTGTAATTTCA CGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATCCCAGCATTATTT AAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAAACACTTGGTTAT ATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAATGTATTAAGAGTT ATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGCAGGXXXXXXXXXXTAT TCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCATTGGTG CCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCC TTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGTATCG TTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTC CATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTA TCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAA TGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTTTTAA ATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAGAGTG ATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTACTTA TAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTG ATTTAGCTCAAGCTATGGGTG
sequence update	2002.10.25
Translated Amino Acid sequence	ilq*KMDLYXALANANXQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDVQIRQ LAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVAIVIS RIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDNVLRV ITDGIKDESQNVKLA--- ---FNVFKNQSIIIYEEALLAIGAIILALDADFEPYFSNFLPILVNFLKNVDFGSVTNIA IGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIP FLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDF VVLINDDPERYDSVTSAALALLGDLAQAMG
Translated Amino Acid sequence (All Frames)	Frame A: ilqKMDLYXALANANXQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDVQIRQ LAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVAIVIS RIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDNVLRV ITDGIKDESQNVKLA--- ---ystysrinqssstkrlslplvpsswlwmlisnltfqisfqsltssrmsilvpqtl qlvslvilvllvrnslvfalksfhslvispiqnslmlnqvlsvvsvisplvlvpisf lsfqwlcqffikplplksmmktfmnsvklsskltlvsfkvsrviiksknsintsiqct llylmmiqnvmilllllpwpylvilklwv Frame B: ysskkwifxklwpmqxinlkvfvqkpnhfpmhhnktfhylfthhnlqmkremykfvn qvlfrivftlkiakemkflnnghqlnqmletslkilfykvdhqnmkhvtlllfh vlvllkfhtqcgknsqhylktlkvvqkvlnnllfkhlvifvkkliqmlcqniqimyel lqmvskmnhkmnq--- ---iqriqesinhhlrrgspchwchhlgfgcfrtllfkfpsnpcklpqecrfwfrnkhc nwyrwfsscfweilwclrnrsidrshqsktlyectkcyqlslyrhcwcrfhs fpsngyansssslyhnrrlfktpnylpnlhwyhsrsqesnrrtqsihqsnvrl cctyksrtlfcyfcclgltwfsssyg Frame C: tpvkngslxsfgqckxsikcsfrsriifnqcittklsiiyslinirtykrerctnssi srycfkeyslkrkknfntmgintkckrhkysftrfritkistshcsycnft ywsynsirnvgrinpsiikhkwfrrytiyssntwlylrnskcyvkifrciksy yrwyqritkckisr--- ---FNVFKNQSIIIYEEALLAIGAIILALDADFEPYFSNFLPILVNFLKNVDFGSVTNIA IGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIP FLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDF VVLINDDPERYDSVTSAALALLGDLAQAMG
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHH865 (VHH865Q) /CSM/VH/VHH8-C/VHH865Q.Seq.d/ 2343 0.0 VHQ306 (VHQ306Q) /CSM/VH/VHQ3-A/VHQ306Q.Seq.d/ 1237 0.0 VHQ201 (VHQ201Q) /CSM/VH/VHQ2-A/VHQ201Q.Seq.d/ 1237 0.0 VHP826 (VHP826Q) /CSM/VH/VHP8-B/VHP826Q.Seq.d/ 1237 0.0 VHP718 (VHP718Q) /CSM/VH/VHP7-A/VHP718Q.Seq.d/ 1237 0.0 VHP264 (VHP264Q) /CSM/VH/VHP2-C/VHP264Q.Seq.d/ 1237 0.0 VHP188 (VHP188Q) /CSM/VH/VHP1-D/VHP188Q.Seq.d/ 1237 0.0 VHO468 (VHO468Q) /CSM/VH/VHO4-C/VHO468Q.Seq.d/ 1237 0.0 VHN621 (VHN621Q) /CSM/VH/VHN6-A/VHN621Q.Seq.d/ 1237 0.0 VHN437 (VHN437Q) /CSM/VH/VHN4-B/VHN437Q.Seq.d/ 1237 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 38 8e-04 12 AL358112\|AL358112.20 Human DNA sequence from clone RP11-311B1 on chromosome 6. 44 0.073 6 AP002799\|AP002799.3 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-806N19. 38 0.17 2 AC024715\|AC024715.3 Homo sapiens chromosome 11 clone RP11-201M22, WORKING DRAFT SEQUENCE, 13 unordered pieces. 38 0.17 2 AC040161\|AC040161.5 Homo sapiens chromosome 16 clone CTC-420A11, complete sequence. 34 0.19 9 AC101680\|AC101680.5 Mus musculus clone RP23-175L18, WORKING DRAFT SEQUENCE, 16 unordered pieces. 36 0.27 9 AC145834\|AC145834.1 Homo sapiens chromosome 19 clone RP11-119A6, WORKING DRAFT SEQUENCE, 28 unordered pieces. 42 0.41 6 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 30 0.44 16 AC119686\|AC119686.7 Rattus norvegicus clone CH230-395K7, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 0.92 5 AL359173\|AL359173.15 Human DNA sequence from clone RP11-769K12 on chromosome 6 Contains STSs and GSSs. 40 0.92 5
dna update	2004. 3.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AE017344_109(AE017344\|pid:none) Cryptococcus neoformans var. neo... 115 2e-24 BC052711_1(BC052711\|pid:none) Mus musculus karyopherin (importin... 113 1e-23 (P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 113 1e-23 AK314780_1(AK314780\|pid:none) Homo sapiens cDNA, FLJ95650, highl... 112 3e-23 PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C... 112 3e-23 (Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 112 3e-23 CR954202_531(CR954202\|pid:none) Ostreococcus tauri strain OTTH05... 105 2e-21 BX842622_14(BX842622\|pid:none) Neurospora crassa DNA linkage gro... 105 3e-21 AF003136_1(AF003136\|pid:none) Caenorhabditis elegans cosmid F28B... 103 1e-20 CP000582_69(CP000582\|pid:none) Ostreococcus lucimarinus CCE9901 ... 103 2e-20
protein update	2009. 4.28
PSORT	psg: 0.81 gvh: 0.47 alm: 0.26 top: 0.17 tms: 0.20 mit: 0.16 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 1.00 m3b: 0.00 m_ : 0.00 32.0 %: endoplasmic reticulum 20.0 %: mitochondrial 16.0 %: plasma membrane 12.0 %: nuclear 8.0 %: extracellular, including cell wall 4.0 %: vacuolar 4.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for AHB821 is end
5' end seq. ID	AHB821F
5' end seq.	>AHB821F.Seq ATACTCCAGTAAAAAATGGATCTTTATNAAGCTTTGGCCAATGCAAATNATCAATCTGAA AGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAAAACTTTCCATTA TTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTACAAATTCGTCAA TTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAAAGAAATGAAATT TTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATTAAAAATACTCTT TTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCTATTGTAATTTCA CGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATCCCAGCATTATTT AAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAAACACTTGGTTAT ATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAATGTATTAAGAGTT ATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGCAGGNNNNNNNNNN
Length of 5' end seq.	597
3' end seq. ID	AHB821Z
3' end seq.	>AHB821Z.Seq NNNNNNNNNNTATTCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTC CTTGCCATTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAAT TTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATT GCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGC GCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCT AAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATT CCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGAT GAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAA GGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGAC TTTGTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTG GCCTTACTTGGTGATTTAGCTCAAGCTATGGGTG
Length of 3' end seq.	634
Connected seq. ID	AHB821P
Connected seq.	>AHB821P.Seq ATACTCCAGTAAAAAATGGATCTTTATNAAGCTTTGGCCAATGCAAATNATCAATCTGAA AGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAAAACTTTCCATTA TTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTACAAATTCGTCAA TTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAAAGAAATGAAATT TTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATTAAAAATACTCTT TTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCTATTGTAATTTCA CGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATCCCAGCATTATTT AAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAAACACTTGGTTAT ATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAATGTATTAAGAGTT ATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGCAGG----------TAT TCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCATTGGTG CCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCC TTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGTATCG TTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTC CATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTA TCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAA TGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTTTTAA ATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAGAGTG ATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTACTTA TAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTG ATTTAGCTCAAGCTATGGGTG
Length of connected seq.	1211
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas