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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHD811
Library AH
(Link to library)
Clone ID AHD811
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15680-1
Original site URL
Representative seq. ID AHD811P
(Link to Original site)
Representative DNA sequence 
>AHD811 (AHD811Q) /CSM/AH/AHD8-A/AHD811Q.Seq.d/
ATTTAATTTTTTTAATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATAT
TTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGAT
TTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTT
CAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCA
GCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCA
GAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCA
TTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACT
GTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGT
TCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTC
TCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGAT
GGTACTAAAACTTATATATTCGAACAAACTCCAATTATGAGTACATATTTAGTTGCTTAT
ATTGXXXXXXXXXXGTAAATTGTTGAAACCCATTATCACAACGTTTAGGCTTTGAAGTTA
AATCAGGTGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTA
TTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCG
ACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATG
GTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAG
AGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGG
CTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAG
TCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCA
ATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAA
AAATGACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAA
TTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTA
ATTCATTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAG
ATTTATAAATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTAT
TAAGTTTTATAAATAATAAAATAAATTTTCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
i*ff*LXIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITV
QVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLS
LVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTV
SECHTAISNMEEKSITPNNDGTKTYIFEQTPIMSTYLVAYI---

---KLLKPIITTFRL*s*ir*iil*hfvkk*skllfgyfg*qrdcgrg*kei*aiqsrpi
fftfrypfkcfshcckewfrs*ttrnyq*iprfq*ycreikfivsclqitiqcigiegfg
ilclkrc*nl*ilyalesrk*i*tssleifh*kl*inq*nl*skcfirlydlfcfvlknd
*stitts*rflqtksscnc*sfn*trfrtn*k*ykmv*fi**rfikld*kinnli**rfi
nldfykk*nlfnfyyffikfyk**nkfs
Translated Amino Acid sequence (All Frames) 
Frame A:
i*ff*LXIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITV
QVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLS
LVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTV
SECHTAISNMEEKSITPNNDGTKTYIFEQTPIMSTYLVAYI---

---vnc*nplsqrlgfevksgesssdtllrnkvnsylgilgdkeivaearkrfeqfkvdq
sslpsdirssvlvtvvkngseaeqqeiinrylasndiaekssllsvvckspssalvlkal
efsvskdvrtcesymlwrvgnefkpvvwkyftenfksinetfnqnvlfaymisfalsskm
tdqqlqqvedffkqnpvaiadrsikqdleqirnntkwfnsfnkdllnwikk*ii*fnkdl
*iwifiknkiylifiifllsfinnkinfq

Frame B:
fnffn*x*stkcvnimiini**kr*idwyyqkmlyqlnmiyi*nqi*knlllkvkrpsqf
k*nnqqkp*lyiqlklkfnqlq*nhhhhlnhqnqlhfmnqkklsslnlkmnyqlvnivyh
wyllvy*mtn*kvsivqsillkvkivi*qqlnskppmlvvlfhvlmnqlikqfsisl*ls
lnviplfqiwkknqllqimmvlkliysnklql*vhi*llil---

---*ivethyhnv*alklnqvnhpltlc*eik*tliwvfwvtkrlwprlerdlsnskstn
llylpisvqvf*sll*rmvpklnnkklsidtslpmilqrnqvycqlfanhhpvhwy*rlw
nslsqkmlelvnpicfgesemnlnq*fgnislktlnqsmkplikmfysli*slllcpqk*
linnynklkissnkiqlqllivqlnki*nkleiiqnglihlikiy*iglknk*snlikiy
kfgfl*kikfi*fllffy*vl*iik*ifk

Frame C:
liflinxsqqnv*i**s*ifsrkgr*igitrkcctn*i*ftfktkfkriyf*r*rdhhss
skttnknhnytfn*n*nsisfnkiiiiisiikinyil*trrschl*i*k*iisw*ilfii
giywfik*qikrflsfkvyc*r*rslfsnnsirshrcssffsmf**tss*ssfqyhfncl
*msyryfkygrkinysk**wy*nlyirtnsnyeyifscly---

---KLLKPIITTFRL*s*ir*iil*hfvkk*skllfgyfg*qrdcgrg*kei*aiqsrpi
fftfrypfkcfshcckewfrs*ttrnyq*iprfq*ycreikfivsclqitiqcigiegfg
ilclkrc*nl*ilyalesrk*i*tssleifh*kl*inq*nl*skcfirlydlfcfvlknd
*stitts*rflqtksscnc*sfn*trfrtn*k*ykmv*fi**rfikld*kinnli**rfi
nldfykk*nlfnfyyffikfyk**nkfs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHD811 (AHD811Q) /CSM/AH/AHD8-A/AHD811Q.Seq.d/                       2002   0.0
VHO863 (VHO863Q) /CSM/VH/VHO8-C/VHO863Q.Seq.d/                       1273   0.0
VHO805 (VHO805Q) /CSM/VH/VHO8-A/VHO805Q.Seq.d/                       1273   0.0
VHN658 (VHN658Q) /CSM/VH/VHN6-C/VHN658Q.Seq.d/                       1273   0.0
VHJ865 (VHJ865Q) /CSM/VH/VHJ8-C/VHJ865Q.Seq.d/                       1273   0.0
VHJ465 (VHJ465Q) /CSM/VH/VHJ4-C/VHJ465Q.Seq.d/                       1273   0.0
VHJ255 (VHJ255Q) /CSM/VH/VHJ2-C/VHJ255Q.Seq.d/                       1273   0.0
VHB570 (VHB570Q) /CSM/VH/VHB5-C/VHB570Q.Seq.d/                       1273   0.0
SHD772 (SHD772Q) /CSM/SH/SHD7-C/SHD772Q.Seq.d/                       1273   0.0
CHS466 (CHS466Q) /CSM/CH/CHS4-C/CHS466Q.Seq.d/                       1273   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC148565|AC148565.2 Papio anubis clone RP41-260B21, WORKING DRAFT SEQUENCE, 4 ordered pieces.    36   6e-05  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   8e-05  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.004  21
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34   0.004  15
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    30   0.005  18
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   0.017  18
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   0.022  18
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    32   0.028  11
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    32   0.028  14
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    30   0.033  18
dna update 2004. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   409   e-112
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   157   9e-37
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   157   1e-36
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   157   1e-36
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   155   3e-36
(P55786) RecName: Full=Puromycin-sensitive aminopeptidase;      ...   149   2e-34
FM992688_411(FM992688|pid:none) Candida dubliniensis CD36 chromo...   149   3e-34
BC098978_1(BC098978|pid:none) Xenopus laevis hypothetical protei...   148   5e-34
A65888_1(A65888|pid:none) Sequence 1 from Patent WO9738114.  &Y0...   147   7e-34
AJ851657_1(AJ851657|pid:none) Gallus gallus mRNA for hypothetica...   147   7e-34
protein update 2009. 4.29
PSORT 

 psg: 0.53  gvh: 0.26  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AHD811 is nuc
5' end seq. ID AHD811F
5' end seq. 
>AHD811F.Seq
ATTTAATTTTTTTAATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATAT
TTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGAT
TTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTT
CAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCA
GCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCA
GAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCA
TTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACT
GTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGT
TCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTC
TCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGAT
GGTACTAAAACTTATATATTCGAACAAACTCCAATTATGAGTACATATTTAGTTGCTTAT
ATTGNNNNNNNNNN
Length of 5' end seq. 674
3' end seq. ID AHD811Z
3' end seq. 
>AHD811Z.Seq
NNNNNNNNNNGTAAATTGTTGAAACCCATTATCACAACGTTTAGGCTTTGAAGTTAAATC
AGGTGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTT
GGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCA
ATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTC
CGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAA
ATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTT
GGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGG
AAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGA
AACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAAT
GACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGC
TGATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTC
ATTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTT
ATAAATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAG
TTTTATAAATAATAAAATAAATTTTCAAA
Length of 3' end seq. 809
Connected seq. ID AHD811P
Connected seq. 
>AHD811P.Seq
ATTTAATTTTTTTAATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATAT
TTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGAT
TTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTT
CAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCA
GCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCA
GAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCA
TTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACT
GTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGT
TCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTC
TCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGAT
GGTACTAAAACTTATATATTCGAACAAACTCCAATTATGAGTACATATTTAGTTGCTTAT
ATTG----------GTAAATTGTTGAAACCCATTATCACAACGTTTAGGCTTTGAAGTTA
AATCAGGTGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTA
TTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCG
ACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATG
GTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAG
AGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGG
CTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAG
TCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCA
ATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAA
AAATGACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAA
TTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTA
ATTCATTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAG
ATTTATAAATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTAT
TAAGTTTTATAAATAATAAAATAAATTTTCAAA
Length of connected seq. 1463
Full length Seq ID -
Full length Seq. -
Length of full length seq. -