NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHE123
Library AH
(Link to library)
Clone ID AHE123
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID AHE123P
(Link to Original site)
Representative DNA sequence 
>AHE123 (AHE123Q) /CSM/AH/AHE1-A/AHE123Q.Seq.d/
AAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAAT
ATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGC
GGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCA
ATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTAC
TATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAAT
ACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGT
TCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACT
GATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATT
AAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATT
GAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCXXXXXXXXXXCTTCAGA
TACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATATCGT
TGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAGA
TATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAAT
CATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGGT
ACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTCC
ATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCGTCA
ATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAAAACTC
TCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAATA
CAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTAA
ACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAGATTT
ATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTTT
AATAATTGATAGGATAAAAAAAAATGAGACGAAAACTAAAATAAACATCAAATTATTGTT
TTCCTTTTAAAACA
sequence update 2002.10.25
Translated Amino Acid sequence 
KMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKVDITINIVKPTKKIIIHS
IDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTILSIDFTGILNDKLKGFYR
SKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKITISSHLTALSNMDTTSVI
ENNDGTKTFIFEQT---

---SDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRSTVLATIVKNGGE
ADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLP
NRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDDSQYNEVVNFFKDHPVPIA
DRSIKQDLEMVTINSNWFKAFNQDLSNWIQSK*k*nllq*kifvliidrikknetktkin
ikllfsf*n
Translated Amino Acid sequence (All Frames) 
Frame A:
KMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKVDITINIVKPTKKIIIHS
IDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTILSIDFTGILNDKLKGFYR
SKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKITISSHLTALSNMDTTSVI
ENNDGTKTFIFEQT---

---lqipc*eik*tlnwvcwvmlisllnvrkdsklskqtlqvyhqifvlqyllqs*rmvv
klinksslinilnll*slkriltfwyllwlqkrnwlkkpsislylhplevkiviwfslps
qivfvnslgltspktlikstkhlktllclvvslvvvsplkwmilntmksstfskiiqfql
livqlnki*kwlqliqigskllikiyqigfnqnknkisynerslf**lig*kkmrrklk*
tsnycfpfkt

Frame B:
kcviini*ltk*id*yyqiisyqvntiyildqi*rilysaakltlqsillnqpkkslsiq
ltlkfnq*rs*inkllplptmnqkklqf*nskmnyqlqkiqfsplislvf*mtn*kvsiv
qnmlsmvkivilvplnskplmlvvlshvlmnll*nlslilkslfhli*llfqiwiqll*l
kimmvlkplflnkl---

---frylvkr*skh*igyvg*c*yrc*m*ekirsfqsrlfkftirysfystcynrkeww*
s*stnhh*sis*iffsr*keflpfgtcfgskrgig*kspqfrfisir*ksr*lygflypp
kscssirlglphqkl*snqrni*klsfvwsyhw*lshl*ng*fsiq*srqlfqrssssnc
*sfn*trfrngyn*fklvqsf*srfikldsikikiksltmkdlcfnn**dkkk*den*nk
hqiivfllk

Frame C:
nv*s*tfs*qsr*isitr*yrtk*irfts*tkfkgfciqrqs*hynqyc*tnqknhypfn
*h*nsiskdlkstsyfryll*trrscnfripr*itsyrkynslh*fhwyfk*qikrflsf
kiccqw*rslywyhsirsh*csscfpmf**tcfkifl*y*nhyfisfncsfkygynfcn*
k**wy*nlyf*tn---

---SDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRSTVLATIVKNGGE
ADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLP
NRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDDSQYNEVVNFFKDHPVPIA
DRSIKQDLEMVTINSNWFKAFNQDLSNWIQSK*k*nllq*kifvliidrikknetktkin
ikllfsf*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO846 (VHO846Q) /CSM/VH/VHO8-B/VHO846Q.Seq.d/                       1403   0.0
VHP622 (VHP622Q) /CSM/VH/VHP6-A/VHP622Q.Seq.d/                       1400   0.0
VHK144 (VHK144Q) /CSM/VH/VHK1-B/VHK144Q.Seq.d/                       1400   0.0
VHH648 (VHH648Q) /CSM/VH/VHH6-B/VHH648Q.Seq.d/                       1400   0.0
VHP237 (VHP237Q) /CSM/VH/VHP2-B/VHP237Q.Seq.d/                       1394   0.0
VHA258 (VHA258Q) /CSM/VH/VHA2-C/VHA258Q.Seq.d/                       1394   0.0
VHJ740 (VHJ740Q) /CSM/VH/VHJ7-B/VHJ740Q.Seq.d/                       1392   0.0
VHE163 (VHE163Q) /CSM/VH/VHE1-C/VHE163Q.Seq.d/                       1388   0.0
VHE494 (VHE494Q) /CSM/VH/VHE4-D/VHE494Q.Seq.d/                       1386   0.0
AHO229 (AHO229Q) /CSM/AH/AHO2-B/AHO229Q.Seq.d/                       1386   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    42   2e-07  19
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   6e-07  20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   5e-06  19
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    38   6e-04  17
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    34   0.003  12
AC068027|AC068027.2 Homo sapiens chromosome 1 clone RP11-392E3 map 1, WORKING DRAFT SEQUENCE, 26 unordered pieces.    36   0.004  10
AC010200|AC010200.8 Homo sapiens 12 BAC RP11-575G13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.006  11
BP514490|BP514490.1 Hydra magnipapillata cDNA, clone:hydmg018bw_14.    52   0.006  2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   0.006  22
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.006  15
dna update 2004. 4.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   224   7e-57
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   152   2e-35
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   152   3e-35
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   152   3e-35
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...   135   4e-30
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   132   2e-29
AM920433_347(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   130   8e-29
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...   130   1e-28
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19...   129   2e-28
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   128   5e-28
protein update 2009. 4.29
PSORT 

 psg: 0.55  gvh: 0.34  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AHE123 is nuc
5' end seq. ID AHE123F
5' end seq. 
>AHE123F.Seq
AAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAAT
ATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGC
GGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCA
ATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTAC
TATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAAT
ACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGT
TCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACT
GATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATT
AAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATT
GAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCNNNNNNNNNN
Length of 5' end seq. 593
3' end seq. ID AHE123Z
3' end seq. 
>AHE123Z.Seq
NNNNNNNNNNCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTG
GGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCT
TCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGT
GAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAG
AATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTC
AATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTC
CCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAAC
GAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAA
ATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATT
GCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAA
GCTTTTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAA
TGAAAGATCTTTGTTTTAATAATTGATAGGATAAAAAAAAATGAGACGAAAACTAAAATA
AACATCAAATTATTGTTTTCCTTTTAAAACA
Length of 3' end seq. 751
Connected seq. ID AHE123P
Connected seq. 
>AHE123P.Seq
AAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAAT
ATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGC
GGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCA
ATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTAC
TATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAAT
ACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGT
TCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACT
GATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATT
AAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATT
GAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTC----------CTTCAGA
TACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATATCGT
TGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAGA
TATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAAT
CATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGGT
ACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTCC
ATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCGTCA
ATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAAAACTC
TCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAATA
CAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTAA
ACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAGATTT
ATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTTT
AATAATTGATAGGATAAAAAAAAATGAGACGAAAACTAAAATAAACATCAAATTATTGTT
TTCCTTTTAAAACA
Length of connected seq. 1324
Full length Seq ID -
Full length Seq. -
Length of full length seq. -