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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHH805
Library AH
(Link to library)
Clone ID AHH805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10840-1
Original site URL
Representative seq. ID AHH805P
(Link to Original site)
Representative DNA sequence 
>AHH805 (AHH805Q) /CSM/AH/AHH8-A/AHH805Q.Seq.d/
ATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGAAAAGATCAGAAAA
ATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATATCATCAGTTCAAA
TGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTATTAAAAGTTTTAAT
TCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAGTATTACGTTATGA
AAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAATATATCTTGTTCA
AGAANGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGANCATGGTATCCATTAAGACG
TATTGTANGTGGTACAATTTACCCXXXXXXXXXXCTTAACTGTTCTTTTAATTCTCTACG
CTTTCCATTGTACTTGGGTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTCTCTG
CCAAACAAAACGATGGTAGTCGTGTGATTTTCGATGATTTCCGTGAAGCCTACCGTTGGA
TTGGTCAAAATACTGCCGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTATCAAT
TATCTGCAATGGCCAATCGTACCGTATTGGTTGATAATAACACTTGGAACAATAGTCATA
TCGCTCAAGTTGGTAAAGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATGAAAG
CATTGGATGTCGATTATGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATG
ATATCAATAAATTCCTTTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAG
AACAAGATTATCTCACCAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACAATGT
TAAATTCTCTCATGTACAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGACTATC
AAAGACCAACAGGTTTCGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTCGATT
TAACTTATTTAGAAGAAGCTTTCACATCTGTTCATGGTTAGTTAGAGTTTATAAAGTTAA
AGATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNIISSNEVGVKEENKGHQEFLLKVLI
LSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTIYLVQEXFYNFLNWFDERXWYPLRR
IVXGTIY---

---LTVLLILYAFHCTWVTSEAYSSPSIVLSAKQNDGSRVIFDDFREAYRWIGQNTADDA
RIMSWWDYGYQLSAMANRTVLVDNNTWNNSHIAQVGKAFASTEEDAYIQMKALDVDYVLV
IFGGLTGYSSDDINKFLWMVRIGGSCDPNIKEQDYLTNGQYRIDKGASPTMLNSLMYKLS
YYRFSEVHTDYQRPTGFDRVRNVEIGNKNFDLTYLEEAFTSVHG*lefiklki
Translated Amino Acid sequence (All Frames) 
Frame A:
iiyiyf*tdqq*eknekirkikyicc***qttrckyhqfk*swc*rrk*rtsriliksfn
sishlcfsifnsfilsitl*kcys*i*sif*l*inniscsrxfl*ffklv**kxmvsikt
ycxwynlp---

---lncsfnslrfplylgh**sllisihctlcqtkrw*scdfr*fp*slpldwskycrrr
syyvlvglwlsiicngqsyrig***hleq*syrssw*sicih*rrclhtnesigcrlcfs
yfwwfnwlqf**yq*ipldg*nww*l*sky*rtrlshqwsi*nr*rcltnnvkfshvqt*
llsfl*ssh*lsktnrfrsckkc*nw**kfrfnlfrrsfhicswlvrvykvkd

Frame B:
*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNIISSNEVGVKEENKGHQEFLLKVLI
LSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTIYLVQEXFYNFLNWFDERXWYPLRR
IVXGTIY---

---LTVLLILYAFHCTWVTSEAYSSPSIVLSAKQNDGSRVIFDDFREAYRWIGQNTADDA
RIMSWWDYGYQLSAMANRTVLVDNNTWNNSHIAQVGKAFASTEEDAYIQMKALDVDYVLV
IFGGLTGYSSDDINKFLWMVRIGGSCDPNIKEQDYLTNGQYRIDKGASPTMLNSLMYKLS
YYRFSEVHTDYQRPTGFDRVRNVEIGNKNFDLTYLEEAFTSVHG*lefiklki

Frame C:
niylflnrstirkk*kdqknqvhlllvitnnkm*issvqmklvlkkkikdiknsy*kf*f
yqsfmf*hfqlvysqyyvmkvlfmnlihiliidqqyilfkxvfiif*iglmkxhgih*dv
lxvvqft---

---*lff*fstlsivlgslvkpthlhplyslpnktmvvv*fsmisvkptvglvkilpttl
vlclggimvinylqwpivpywliitlgtivislklvkhlhplkkmltyk*khwmsimf*l
flvv*lvtvlmisinsfgwlelvvvviqilknkiispmvnie*ikvphqqc*ilsctnlv
tivslkftltikdqqvsiv*emlklvikisi*li*kklshlfmvs*sl*s*rf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHH805 (AHH805Q) /CSM/AH/AHH8-A/AHH805Q.Seq.d/                       2034   0.0
VHD769 (VHD769Q) /CSM/VH/VHD7-C/VHD769Q.Seq.d/                       1372   0.0
VHA159 (VHA159Q) /CSM/VH/VHA1-C/VHA159Q.Seq.d/                       1372   0.0
AHA661 (AHA661Q) /CSM/AH/AHA6-C/AHA661Q.Seq.d/                       1372   0.0
VHK346 (VHK346Q) /CSM/VH/VHK3-B/VHK346Q.Seq.d/                       1368   0.0
VFF641 (VFF641Q) /CSM/VF/VFF6-B/VFF641Q.Seq.d/                       1368   0.0
VHC163 (VHC163Q) /CSM/VH/VHC1-C/VHC163Q.Seq.d/                       1364   0.0
AHQ270 (AHQ270Q) /CSM/AH/AHQ2-C/AHQ270Q.Seq.d/                       1360   0.0
VHO701 (VHO701Q) /CSM/VH/VHO7-A/VHO701Q.Seq.d/                       1358   0.0
VHJ693 (VHJ693Q) /CSM/VH/VHJ6-D/VHJ693Q.Seq.d/                       1358   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX799082|AX799082.1 Sequence 1 from Patent WO03054008.             68   2e-27  6
AY074880|AY074880.1 Homo sapiens source of immunodominant MHC-associated peptides (SIMP) mRNA, complete cds.    68   2e-27  6
BU094108|BU094108.1 rf50d02.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:STT3_MOUSE P46978 OLIGOSACCHARYL TRANSFERASE STT3 SUBUNIT HOMOLOG ;, mRNA sequence.    80   2e-26  4
CN771338|CN771338.1 tad96h06.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5' similar to TR:Q9XZ53 Q9XZ53 OSTSTT3 PROTEIN. ;, mRNA sequence.    60   2e-19  5
AC104643|AC104643.2 Homo sapiens chromosome 3 clone RP11-356I4, complete sequence.    66   3e-19  9
BX649102|BX649102.1 Homo sapiens mRNA; cDNA DKFZp779N2434 (from clone DKFZp779N2434).    48   2e-18  5
CD074969|CD074969.1 MA3-0001U-M319-A02-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-0001U-M319-A02.B, mRNA sequence.    72   5e-18  3
AA887367|AA887367.1 L30-339T3 Ice plant Lambda Uni-Zap XR expression library, 30 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L30-339 5' similar to Oligosaccharyl transferase STT3 subunit, mRNA sequence.    66   9e-17  3
BT008132|BT008132.1 Synthetic construct Homo sapiens integral membrane protein 1 mRNA, partial cds.    48   1e-16  4
BT007100|BT007100.1 Homo sapiens integral membrane protein 1 mRNA, complete cds.    48   1e-16  4
dna update 2004. 6.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT064584_1(BT064584|pid:none) Zea mays full-length cDNA clone ZM...   333   5e-90
BT044907_1(BT044907|pid:none) Salmo salar clone ssal-rgf-507-033...   330   4e-89
L47337_1(L47337|pid:none) Homo sapiens transmembrane protein (TM...   330   4e-89
AK295892_1(AK295892|pid:none) Homo sapiens cDNA FLJ58575 complet...   330   7e-89
CQ834708_1(CQ834708|pid:none) Sequence 579 from Patent WO2004058...   330   7e-89
AY891653_1(AY891653|pid:none) Synthetic construct Homo sapiens c...   330   7e-89
CQ834710_1(CQ834710|pid:none) Sequence 581 from Patent WO2004058...   330   7e-89
(P46977) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   330   7e-89
BC048348_1(BC048348|pid:none) Homo sapiens STT3, subunit of the ...   330   7e-89
BC046072_1(BC046072|pid:none) Danio rerio integral membrane prot...   328   1e-88
protein update 2009. 5. 3
PSORT 

 psg: 0.22  gvh: 0.21  alm: 0.22  top: 0.53  tms: 0.13  mit: 0.36  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for AHH805 is pla
5' end seq. ID AHH805F
5' end seq. 
>AHH805F.Seq
ATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGAAAAGATCAGAAAA
ATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATATCATCAGTTCAAA
TGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTATTAAAAGTTTTAAT
TCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAGTATTACGTTATGA
AAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAATATATCTTGTTCA
AGAANGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGANCATGGTATCCATTAAGACG
TATTGTANGTGGTACAATTTACCCNNNNNNNNNN
Length of 5' end seq. 394
3' end seq. ID AHH805Z
3' end seq. 
>AHH805Z.Seq
NNNNNNNNNNCTTAACTGTTCTTTTAATTCTCTACGCTTTCCATTGTACTTGGGTCACTA
GTGAAGCCTACTCATCTCCATCCATTGTACTCTCTGCCAAACAAAACGATGGTAGTCGTG
TGATTTTCGATGATTTCCGTGAAGCCTACCGTTGGATTGGTCAAAATACTGCCGACGACG
CTCGTATTATGTCTTGGTGGGATTATGGTTATCAATTATCTGCAATGGCCAATCGTACCG
TATTGGTTGATAATAACACTTGGAACAATAGTCATATCGCTCAAGTTGGTAAAGCATTTG
CATCCACTGAAGAAGATGCTTACATACAAATGAAAGCATTGGATGTCGATTATGTTTTAG
TTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATGATATCAATAAATTCCTTTGGATGG
TTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAGAACAAGATTATCTCACCAATGGTC
AATATAGAATAGATAAAGGTGCCTCACCAACAATGTTAAATTCTCTCATGTACAAACTTA
GTTACTATCGTTTCTCTGAAGTTCACACTGACTATCAAAGACCAACAGGTTTCGATCGTG
TAAGAAATGTTGAAATTGGTAATAAAAATTTCGATTTAACTTATTTAGAAGAAGCTTTCA
CATCTGTTCATGGTTAGTTAGAGTTTATAAAGTTAAAGATTT
Length of 3' end seq. 702
Connected seq. ID AHH805P
Connected seq. 
>AHH805P.Seq
ATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGAAAAGATCAGAAAA
ATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATATCATCAGTTCAAA
TGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTATTAAAAGTTTTAAT
TCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAGTATTACGTTATGA
AAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAATATATCTTGTTCA
AGAANGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGANCATGGTATCCATTAAGACG
TATTGTANGTGGTACAATTTACCC----------CTTAACTGTTCTTTTAATTCTCTACG
CTTTCCATTGTACTTGGGTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTCTCTG
CCAAACAAAACGATGGTAGTCGTGTGATTTTCGATGATTTCCGTGAAGCCTACCGTTGGA
TTGGTCAAAATACTGCCGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTATCAAT
TATCTGCAATGGCCAATCGTACCGTATTGGTTGATAATAACACTTGGAACAATAGTCATA
TCGCTCAAGTTGGTAAAGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATGAAAG
CATTGGATGTCGATTATGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATG
ATATCAATAAATTCCTTTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAG
AACAAGATTATCTCACCAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACAATGT
TAAATTCTCTCATGTACAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGACTATC
AAAGACCAACAGGTTTCGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTCGATT
TAACTTATTTAGAAGAAGCTTTCACATCTGTTCATGGTTAGTTAGAGTTTATAAAGTTAA
AGATTT
Length of connected seq. 1076
Full length Seq ID -
Full length Seq. -
Length of full length seq. -