>AHJ111 (AHJ111Q) /CSM/AH/AHJ1-A/AHJ111Q.Seq.d/
CAAAAAACNTTTCAAAANATNTTGGAATTGATAATAATTTAAAATTAACCCCTTTGGTTG
GTTTGATTGAAATTGATGATTCATCAATTTATTCAAAACTNTXXXXXXXXXXTATAAAAG
GAACCACCAAATACTATAAATTGTTTGGATTTGAAAGATTGTTATGCGATGAACAATACA
TTGTATTGCAAAGAGTGTAAATTCAATTGTCATTATTCAAAACATATGCATATCACATAT
GAAACATTTTTAATTAAAAAGGAAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAA
GGAATTGATGCAACATCTTTGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAG
GAAAATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCACAACTTTCATACTTTTTA
AAAGAAAATTGCATTACAACATACCATGATACAGTCATTGAATATTTGAAAATTTGTATT
GAAAATGAAGAACTCAAATCAGATAAATCAGGTAAAAAATCAATGGAAGATAATTTAAAG
TTTTTCCAAGATCAACATGATTATTTTCAAAAAAATCTTTCCAACCAACAAATCCAAAAA
ATCACAACAAAAGATGTCCCAATTCTCATTGAAAAATTAAAAAACCTCAAAGAAAATGGT
AAAACACTTAGAGAATGCATCGAAGCTAATGTAAATGAACAATTAAAAACAGGCTTCAAT
CCAATTGTTGTCACAAAAAATACAAATCATTCAAAAGAATGGGGTTTTATTTCTCAA

KNXSKXXGIDNNLKLTPLVGLIEIDDSSIYSKL---

---IKGTTKYYKLFGFERLLCDEQYIVLQRV*iqlslfktyayhi*nifn*kgngkrrc*
ktn*rrn*cnifektmg*ilrern*gky**ek*nt*n*lttfilfkrklhynip*ysh*i
fenly*k*rtqir*ir*kingr*fkvfprst*lfskksfqptnpknhnkrcpnsh*kikk
pqrkw*nt*rmhrs*ck*tiknrlqsncchkkyksfkrmgfyfs

Frame A:
qktfqxxleliii*n*plwlv*lklmihqfiqnx---

---ykrnhqil*ivwi*kivmr*tihciaksvnsiviiqnicishmkhf*lkrkwktkml
knklkkelmqhl*kdnglnp*rkklrkilmrkmkylklahnfhtf*kkialqhtmiqsln
i*kfvlkmknsnqinqvknqwkii*sfskinmiifkkifptnkskksqqkmsqfslkn*k
tskkmvkhlenasklm*mnn*kqasiqllsqkiqiiqkngvlfl

Frame B:
kkxfkxxwn***fkinpfgwfd*n**finlfkt---

---IKGTTKYYKLFGFERLLCDEQYIVLQRV*iqlslfktyayhi*nifn*kgngkrrc*
ktn*rrn*cnifektmg*ilrern*gky**ek*nt*n*lttfilfkrklhynip*ysh*i
fenly*k*rtqir*ir*kingr*fkvfprst*lfskksfqptnpknhnkrcpnsh*kikk
pqrkw*nt*rmhrs*ck*tiknrlqsncchkkyksfkrmgfyfs

Frame C:
KNXSKXXGIDNNLKLTPLVGLIEIDDSSIYSKL---

---*keppntincldlkdcyamnntlyckeckfnchyskhmhityetflikkemenedvk
kqieegidatslkrqwveslekeikentdekneilkissqlsyflkencittyhdtviey
lkicieneelksdksgkksmednlkffqdqhdyfqknlsnqqiqkittkdvpilieklkn
lkengktlrecieanvneqlktgfnpivvtkntnhskewgfisq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHJ111 (AHJ111Q) /CSM/AH/AHJ1-A/AHJ111Q.Seq.d/                       1124   0.0
CHI688 (CHI688Q) /CSM/CH/CHI6-D/CHI688Q.Seq.d/                        985   0.0
AHH111 (AHH111Q) /CSM/AH/AHH1-A/AHH111Q.Seq.d/                        985   0.0
AHD816 (AHD816Q) /CSM/AH/AHD8-A/AHD816Q.Seq.d/                        985   0.0
AHD218 (AHD218Q) /CSM/AH/AHD2-A/AHD218Q.Seq.d/                        985   0.0
AHA294 (AHA294Q) /CSM/AH/AHA2-D/AHA294Q.Seq.d/                        985   0.0
AHI744 (AHI744Q) /CSM/AH/AHI7-B/AHI744Q.Seq.d/                        983   0.0
CHR548 (CHR548Q) /CSM/CH/CHR5-B/CHR548Q.Seq.d/                        979   0.0
SHD616 (SHD616Q) /CSM/SH/SHD6-A/SHD616Q.Seq.d/                        977   0.0
AHH819 (AHH819Q) /CSM/AH/AHH8-A/AHH819Q.Seq.d/                        977   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   2e-07  21
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   4e-07  18
AC118161|AC118161.6 Rattus norvegicus clone CH230-296C3, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   2e-06  8
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34   5e-06  16
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    36   6e-06  18
Z99281|Z99281.1 Caenorhabditis elegans YAC Y57G11C.                34   7e-06  16
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34   7e-06  15
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   1e-05  12
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   1e-05  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   3e-05  17

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom...    67   8e-10
BC152666_1(BC152666|pid:none) Danio rerio hypothetical LOC554469...    47   9e-04
CP000025_577(CP000025|pid:none) Campylobacter jejuni RM1221, com...    46   0.001
BC155593_1(BC155593|pid:none) Danio rerio zgc:172065, mRNA (cDNA...    44   0.006
CP001080_932(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    44   0.007
BC144320_1(BC144320|pid:none) Homo sapiens coiled-coil domain co...    43   0.009
AB201172_1(AB201172|pid:none) Homo sapiens GRDN mRNA for girdin,...    43   0.009
AM910992_27(AM910992|pid:none) Plasmodium knowlesi strain H chro...    43   0.009
BC132736_1(BC132736|pid:none) Homo sapiens coiled-coil domain co...    43   0.009
BC078168_1(BC078168|pid:none) Homo sapiens coiled-coil domain co...    43   0.009

 psg: 0.66  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for AHJ111 is cyt

>AHJ111F.Seq
CAAAAAACNTTTCAAAANATNTTGGAATTGATAATAATTTAAAATTAACCCCTTTGGTTG
GTTTGATTGAAATTGATGATTCATCAATTTATTCAAAACTNTNNNNNNNNNN

>AHJ111Z.Seq
NNNNNNNNNNTATAAAAGGAACCACCAAATACTATAAATTGTTTGGATTTGAAAGATTGT
TATGCGATGAACAATACATTGTATTGCAAAGAGTGTAAATTCAATTGTCATTATTCAAAA
CATATGCATATCACATATGAAACATTTTTAATTAAAAAGGAAATGGAAAACGAAGATGTT
AAAAAACAAATTGAAGAAGGAATTGATGCAACATCTTTGAAAAGACAATGGGTTGAATCC
TTAGAGAAAGAAATTAAGGAAAATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCA
CAACTTTCATACTTTTTAAAAGAAAATTGCATTACAACATACCATGATACAGTCATTGAA
TATTTGAAAATTTGTATTGAAAATGAAGAACTCAAATCAGATAAATCAGGTAAAAAATCA
ATGGAAGATAATTTAAAGTTTTTCCAAGATCAACATGATTATTTTCAAAAAAATCTTTCC
AACCAACAAATCCAAAAAATCACAACAAAAGATGTCCCAATTCTCATTGAAAAATTAAAA
AACCTCAAAGAAAATGGTAAAACACTTAGAGAATGCATCGAAGCTAATGTAAATGAACAA
TTAAAAACAGGCTTCAATCCAATTGTTGTCACAAAAAATACAAATCATTCAAAAGAATGG
GGTTTTATTTCTCAA

>AHJ111P.Seq
CAAAAAACNTTTCAAAANATNTTGGAATTGATAATAATTTAAAATTAACCCCTTTGGTTG
GTTTGATTGAAATTGATGATTCATCAATTTATTCAAAACTNT----------TATAAAAG
GAACCACCAAATACTATAAATTGTTTGGATTTGAAAGATTGTTATGCGATGAACAATACA
TTGTATTGCAAAGAGTGTAAATTCAATTGTCATTATTCAAAACATATGCATATCACATAT
GAAACATTTTTAATTAAAAAGGAAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAA
GGAATTGATGCAACATCTTTGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAG
GAAAATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCACAACTTTCATACTTTTTA
AAAGAAAATTGCATTACAACATACCATGATACAGTCATTGAATATTTGAAAATTTGTATT
GAAAATGAAGAACTCAAATCAGATAAATCAGGTAAAAAATCAATGGAAGATAATTTAAAG
TTTTTCCAAGATCAACATGATTATTTTCAAAAAAATCTTTCCAACCAACAAATCCAAAAA
ATCACAACAAAAGATGTCCCAATTCTCATTGAAAAATTAAAAAACCTCAAAGAAAATGGT
AAAACACTTAGAGAATGCATCGAAGCTAATGTAAATGAACAATTAAAAACAGGCTTCAAT
CCAATTGTTGTCACAAAAAATACAAATCATTCAAAAGAATGGGGTTTTATTTCTCAA