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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHJ319
Library AH
(Link to library)
Clone ID AHJ319
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12733-1|Contig-U15681-1
Original site URL
Representative seq. ID AHJ319P
(Link to Original site)
Representative DNA sequence 
>AHJ319 (AHJ319Q) /CSM/AH/AHJ3-A/AHJ319Q.Seq.d/
ACTGTTGGCCTACTGGTATTTCTAATAATAACACAAAAAATTTATATTTTTTTTATTATT
GAAGCTTTACATTATTATTTTAAATATATTTTTTTAATTGTTATTTATATTTTTTGTTTT
TTATTTTAAATCATAAACATTAATAATAAATTAATAAACACATTCTCAAAAAAAAAAXXX
XXXXXXXACAACAATAGTAAAAATAAAATTAATGATGAAAGTAAAACTGATGGTAGAAGT
TTGTATGAAAAATATAAAAAATATTTTATAGCAACTATAATAATCGGTAGTTTGGCATTA
ATTATAGTTGCCTTTAAAATTATACTTTACTTTAATAGAAAAAATGGTACTGTAGTCTAT
TGGAAATATATTATAAAAGAAAAAATATATAAATTTAAAAATAGAAAAGAGCAAAAATGT
ATAGATGATATGAGAGAAATATTAAATAATGCAGAGAAAAATTTTCCTGACATAAAATTA
GATAATTTAATAACTTATAAAAAGTATGAAATACCACAAGAAAAAAGTGTAGAAGGAGAA
CTAAAAGAACAAGCACCTCCTCTAAGTGAATATGACCAATTTCCAAGCTATTATTTACAT
TCACCAAAAGATTCACAACCTCCAAATCAAATTGAAACTTTACCAAAAGATTCACCTCCT
CCAAATCAAAATGAAACATTACCAGAAGATTCACCACCTCCAAACCAAATTGAAAAATTA
ACAGAAGATTCATTACCACCTTCAAATCAAATTGAAACGTTACCAGAAGATTCATCACCA
CCTCCAAATCAAACTGAAAAAATAACAGACAATTCATCATCTCAAGATGGACCATCAAGC
TCTTCATAATTTCTTTTTTTTCTTTACTGGACCACTTTCCCAATAATCTTTTTAAAAAAT
AATAAATAAATAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllvfliitqkiyiffiiealhyyfkyifliviyifcflf*IININNKLINTFSKKK-
--

---NNSKNKINDESKTDGRSLYEKYKKYFIATIIIGSLALIIVAFKIILYFNRKNGTVVY
WKYIIKEKIYKFKNRKEQKCIDDMREILNNAEKNFPDIKLDNLITYKKYEIPQEKSVEGE
LKEQAPPLSEYDQFPSYYLHSPKDSQPPNQIETLPKDSPPPNQNETLPEDSPPPNQIEKL
TEDSLPPSNQIETLPEDSSPPPNQTEKITDNSSSQDGPSSSS*flfflywttfpiiflkn
nk*in
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvfliitqkiyiffiiealhyyfkyifliviyifcflf*IININNKLINTFSKKK-
--

---ttivkiklmmkvklmvevcmkniknil*ql**svvwh*l*lplklyftliekmvl*s
ignil*kkkyinlkieksknv*mi*eky*imqrkiflt*n*ii**liksmkyhkkkv*ke
n*knkhll*vnmtnfqaiiyihqkihnlqiklklyqkihllqikmkhyqkihhlqtklkn
*qkihyhlqiklkryqkihhhlqiklkk*qtihhlkmdhqalhnffffftgplsq*sf*k
iink*i

Frame B:
llaywyf***hkkfifflllklyiiilniff*llfiffvfyfks*tliin**thsqkk--
-

---qq**k*n***k*n*w*kfv*ki*kifysnynnr*fginyscl*nytll**kkwycsl
leiyykrkni*i*k*krakmyr*yernik*crekfs*hkir*fnnl*kv*nttrkkcrrr
tkrtstssk*i*piskllftftkrfttsksn*nftkrftssksk*nitrrfttskpn*ki
nrrfittfksn*nvtrrfittsksn*knnrqfiisrwtiklfiisffslldhfpnnlfkk
**ink

Frame C:
cwptgisnnntknlyffyy*sftllf*iyffncylyflffilnhkh***inkhilkkk--
-

---NNSKNKINDESKTDGRSLYEKYKKYFIATIIIGSLALIIVAFKIILYFNRKNGTVVY
WKYIIKEKIYKFKNRKEQKCIDDMREILNNAEKNFPDIKLDNLITYKKYEIPQEKSVEGE
LKEQAPPLSEYDQFPSYYLHSPKDSQPPNQIETLPKDSPPPNQNETLPEDSPPPNQIEKL
TEDSLPPSNQIETLPEDSSPPPNQTEKITDNSSSQDGPSSSS*flfflywttfpiiflkn
nk*in
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHJ319 (AHJ319Q) /CSM/AH/AHJ3-A/AHJ319Q.Seq.d/                        894   0.0
AHR426 (AHR426Q) /CSM/AH/AHR4-B/AHR426Q.Seq.d/                        297   2e-79
SHL363 (SHL363Q) /CSM/SH/SHL3-C/SHL363Q.Seq.d/                        159   9e-38
AHQ845 (AHQ845Q) /CSM/AH/AHQ8-B/AHQ845Q.Seq.d/                        159   9e-38
AHK732 (AHK732Q) /CSM/AH/AHK7-B/AHK732Q.Seq.d/                        159   9e-38
AHB804 (AHB804Q) /CSM/AH/AHB8-A/AHB804Q.Seq.d/                        159   9e-38
CHM154 (CHM154Q) /CSM/CH/CHM1-C/CHM154Q.Seq.d/                        157   4e-37
CHO237 (CHO237Q) /CSM/CH/CHO2-B/CHO237Q.Seq.d/                        145   1e-33
AHB353 (AHB353Q) /CSM/AH/AHB3-C/AHB353Q.Seq.d/                        145   1e-33
AHA666 (AHA666Q) /CSM/AH/AHA6-C/AHA666Q.Seq.d/                        145   1e-33
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.   484   0.0    13
AC115581|AC115581.3 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    44   8e-09  11
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome.    36   2e-08  11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   1e-07  19
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    32   1e-07  19
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     40   4e-07  22
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             40   4e-07  22
AF291051|AF291051.1 Carsonella ruddii cell division protein (gidA) gene, partial cds; ATP synthase subunit a (atpB), ATP synthase subunit c (atpE), ATP synthase subunit b (atpF), ATP synthase alpha subunit (atpA), ATP synthase gamma subunit (atpG), ATP synthase beta subunit (atpD), ornithine transcarbamylase (argI), 3-dehydroquinate dehydratase, and transketolase (tkt) genes, complete cds; and unknown genes.    40   1e-06  7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-06  17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   2e-06  20
dna update 2004. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ890364_207(AJ890364|pid:none) Emiliania huxleyi virus 86 isola...    50   1e-04
BT001295_1(BT001295|pid:none) Drosophila melanogaster AT11052 fu...    49   2e-04
AC007945_17(AC007945|pid:none) Genomic sequence for Arabidopsis ...    49   3e-04
AM420293_827(AM420293|pid:none) Saccharopolyspora erythraea NRRL...    49   3e-04
OZZQBK(S07873;S12571)circumsporozoite protein precursor - Plasmo...    48   4e-04
(P23093) RecName: Full=Circumsporozoite protein;          Short=...    48   4e-04
AY596297_2217(AY596297|pid:none) Haloarcula marismortui ATCC 430...    47   9e-04
(P06915) RecName: Full=Circumsporozoite protein;          Short=...    45   0.003
CP000593_126(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...    45   0.003
T07021(T07021) extensin-like protein Dif10 precursor - tomato (f...    45   0.004
protein update 2009. 5. 4
PSORT 

 psg: 0.64  gvh: 0.44  alm: 0.16  top: 0.60  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for AHJ319 is nuc
5' end seq. ID AHJ319F
5' end seq. 
>AHJ319F.Seq
ACTGTTGGCCTACTGGTATTTCTAATAATAACACAAAAAATTTATATTTTTTTTATTATT
GAAGCTTTACATTATTATTTTAAATATATTTTTTTAATTGTTATTTATATTTTTTGTTTT
TTATTTTAAATCATAAACATTAATAATAAATTAATAAACACATTCTCAAAAAAAAAANNN
NNNNNNN
Length of 5' end seq. 187
3' end seq. ID AHJ319Z
3' end seq. 
>AHJ319Z.Seq
NNNNNNNNNNACAACAATAGTAAAAATAAAATTAATGATGAAAGTAAAACTGATGGTAGA
AGTTTGTATGAAAAATATAAAAAATATTTTATAGCAACTATAATAATCGGTAGTTTGGCA
TTAATTATAGTTGCCTTTAAAATTATACTTTACTTTAATAGAAAAAATGGTACTGTAGTC
TATTGGAAATATATTATAAAAGAAAAAATATATAAATTTAAAAATAGAAAAGAGCAAAAA
TGTATAGATGATATGAGAGAAATATTAAATAATGCAGAGAAAAATTTTCCTGACATAAAA
TTAGATAATTTAATAACTTATAAAAAGTATGAAATACCACAAGAAAAAAGTGTAGAAGGA
GAACTAAAAGAACAAGCACCTCCTCTAAGTGAATATGACCAATTTCCAAGCTATTATTTA
CATTCACCAAAAGATTCACAACCTCCAAATCAAATTGAAACTTTACCAAAAGATTCACCT
CCTCCAAATCAAAATGAAACATTACCAGAAGATTCACCACCTCCAAACCAAATTGAAAAA
TTAACAGAAGATTCATTACCACCTTCAAATCAAATTGAAACGTTACCAGAAGATTCATCA
CCACCTCCAAATCAAACTGAAAAAATAACAGACAATTCATCATCTCAAGATGGACCATCA
AGCTCTTCATAATTTCTTTTTTTTCTTTACTGGACCACTTTCCCAATAATCTTTTTAAAA
AATAATAAATAAATAAATA
Length of 3' end seq. 739
Connected seq. ID AHJ319P
Connected seq. 
>AHJ319P.Seq
ACTGTTGGCCTACTGGTATTTCTAATAATAACACAAAAAATTTATATTTTTTTTATTATT
GAAGCTTTACATTATTATTTTAAATATATTTTTTTAATTGTTATTTATATTTTTTGTTTT
TTATTTTAAATCATAAACATTAATAATAAATTAATAAACACATTCTCAAAAAAAAAA---
-------ACAACAATAGTAAAAATAAAATTAATGATGAAAGTAAAACTGATGGTAGAAGT
TTGTATGAAAAATATAAAAAATATTTTATAGCAACTATAATAATCGGTAGTTTGGCATTA
ATTATAGTTGCCTTTAAAATTATACTTTACTTTAATAGAAAAAATGGTACTGTAGTCTAT
TGGAAATATATTATAAAAGAAAAAATATATAAATTTAAAAATAGAAAAGAGCAAAAATGT
ATAGATGATATGAGAGAAATATTAAATAATGCAGAGAAAAATTTTCCTGACATAAAATTA
GATAATTTAATAACTTATAAAAAGTATGAAATACCACAAGAAAAAAGTGTAGAAGGAGAA
CTAAAAGAACAAGCACCTCCTCTAAGTGAATATGACCAATTTCCAAGCTATTATTTACAT
TCACCAAAAGATTCACAACCTCCAAATCAAATTGAAACTTTACCAAAAGATTCACCTCCT
CCAAATCAAAATGAAACATTACCAGAAGATTCACCACCTCCAAACCAAATTGAAAAATTA
ACAGAAGATTCATTACCACCTTCAAATCAAATTGAAACGTTACCAGAAGATTCATCACCA
CCTCCAAATCAAACTGAAAAAATAACAGACAATTCATCATCTCAAGATGGACCATCAAGC
TCTTCATAATTTCTTTTTTTTCTTTACTGGACCACTTTCCCAATAATCTTTTTAAAAAAT
AATAAATAAATAAATA
Length of connected seq. 906
Full length Seq ID -
Full length Seq. -
Length of full length seq. -