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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHJ409
Library AH
(Link to library)
Clone ID AHJ409
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10968-1
Original site URL
Representative seq. ID AHJ409P
(Link to Original site)
Representative DNA sequence 
>AHJ409 (AHJ409Q) /CSM/AH/AHJ4-A/AHJ409Q.Seq.d/
AATTTTAATAATAATAATAATAATAATAATAATAAATAAGTTATTATTATATATATTTAC
CCCTATTTATTATTATTATTTTTATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAA
TAAAAAAAATAAAAAAAAAATAAAAAAAAATGAATATTAATATAAANAAATTAGATGGTN
CAATTTATAGTATTGAAGGNGTAACTTTANAAACTACTGTACCAGAACTTAAAAAATTAA
TTGAAGCCAAATCTTCAATTTCAATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTAT
TACGTGATGATAAAACTTTGCAATTTTATAATATTGAAGATGGAGTTACATTACATTTAG
CANAAAGAGCNCCAGAAGCAAATCCATCACAATCAAATAGTGGAAGTAGTGGTAGNGGCA
GTAGTAGTACTGATAGTATTAGNGGGGGTAGTAATTCACCAATTGATAGTAATAATATAT
TGAATAXXXXXXXXXXCCAGATTCAGAGGATTACAATATTCAACAAGAGATGAGTAGTTT
TAGCAATCAATTCGTTAGAGAGTTGGTAGATTCTTTGGCAACTTGCTTTTCAAATGGTAA
AGATGGTGCACTTGAATTTCTAGATTCATTTGTAAATCAAAAAGTTATAACACAAAGTCC
AATGCTTGCACCATTCTCTAGAATGACAAGTGAATATCTTCGTGATGCTTATGAATCCTC
TCCACCACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACAACAACAACAACA
ACAAAATAATAACAATAGAAATACTACTACAACAACAACTACCACCACAACAACTACACC
TTCAAGATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAACAATCGAAATTGA
TGAAGCAAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTATTTTAAAGGAAA
AAAGAAACCTACCACAAATAATAGTAATAATAATAATAATAACAACAATAACAATAACAA
TAATAATACTAGCGATATCAATAATAATAATAATAACAATAATAATAATAACAACAACTC
AACCAATTCACCATTCGAAACTGTTTTACAAAATTNTACAGAAGGAACTCAAGTAAAATA
GGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTTATCACAAATGTACCAAAACATCCT
CAAAAAATAAAAACTTCTCCTCAAAAACATGTAAATAATAAATAAAGNA
sequence update 2002.10.25
Translated Amino Acid sequence 
f**********isyyyiylplfiiiifi*iiknys*skkikkikkk*KKMNINIXKLDGX
IYSIEGVTLXTTVPELKKLIEAKSSISIPLQRVIYKGKVLRDDKTLQFYNIEDGVTLHLA
XRAPEANPSQSNSGSSGXGSSSTDSIXGGSNSPIDSNNILN---

---PDSEDYNIQQEMSSFSNQFVRELVDSLATCFSNGKDGALEFLDSFVNQKVITQSPML
APFSRMTSEYLRDAYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTTTTTTTTTTPSR
STSSNIIPPEWMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNNNNNNNNNNNNN
TSDINNNNNNNNNNNNNSTNSPFETVLQNXTEGTQVK*edlikneeakalsqmyqnilkk
*klllknm*iinkx
Translated Amino Acid sequence (All Frames) 
Frame A:
nfnnnnnnnnnk*viiiyiypyllllflfk**kiihkvkk*kk*kknkkk*ili*xn*mv
qfivlkx*lxkllyqnlkn*lkpnlqfqshfke*fikekyyvmiklcnfiilkmelhyi*
xkexqkqihhnqivevvvxavvvlivlxgvvihqliviiy*i---

---PDSEDYNIQQEMSSFSNQFVRELVDSLATCFSNGKDGALEFLDSFVNQKVITQSPML
APFSRMTSEYLRDAYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTTTTTTTTTTPSR
STSSNIIPPEWMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNNNNNNNNNNNNN
TSDINNNNNNNNNNNNNSTNSPFETVLQNXTEGTQVK*edlikneeakalsqmyqnilkk
*klllknm*iinkx

Frame B:
iliiiiiiiiinklllyiftpiyyyyfylnnkklfik*knkknkkkikkney*ykxirwx
nl*y*rxnfxnyctrt*kin*sqifnfnptsksnl*rksit***nfail*y*rwsyitfs
xksxrsksitik*wk*w*xq**y**y*xg**ftn****yie---

---qiqritifnkr*vvlainslesw*ilwqlafqmvkmvhlnf*ihl*ikkl*hkvqcl
hhsle*qvnifvmlmnplhhlihyh*lmlvylnnnnnnkiitieillqqqlppqqlhlqd
lhhrilfhqngwkqsklmkqdnhlehqehqvqlilkekrnlpqiiviiiiittititiii
laisiiiiitiiiitttqpihhsklfykixqkelk*nrki*sktkkprlyhkctktsskn
knfssktck**ik

Frame C:
f**********isyyyiylplfiiiifi*iiknys*skkikkikkk*KKMNINIXKLDGX
IYSIEGVTLXTTVPELKKLIEAKSSISIPLQRVIYKGKVLRDDKTLQFYNIEDGVTLHLA
XRAPEANPSQSNSGSSGXGSSSTDSIXGGSNSPIDSNNILN---

---rfrglqystrde*f*qsir*rvgrffgnllfkw*rwct*isrficksksyntksnac
til*ndk*iss*cl*ilstt*fitin*c*ft*ttttttk**q*kyyynnnyhhnnytfki
yiieyystrmdgnnrn**sktiiwnikntkcnlf*rkketyhk********qq*q*q**y
*ryq*****q****qqlnqftirncftkxyrrnsskigrfnqkrrsqgfitnvpkhpqki
ktspqkhvnnk*x
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHJ409 (AHJ409Q) /CSM/AH/AHJ4-A/AHJ409Q.Seq.d/                       1041   0.0
VHI650 (VHI650Q) /CSM/VH/VHI6-C/VHI650Q.Seq.d/                        549   e-155
VHI166 (VHI166Q) /CSM/VH/VHI1-C/VHI166Q.Seq.d/                        549   e-155
VHB663 (VHB663Q) /CSM/VH/VHB6-C/VHB663Q.Seq.d/                        549   e-155
SHG671 (SHG671Q) /CSM/SH/SHG6-C/SHG671Q.Seq.d/                        549   e-155
SHF507 (SHF507Q) /CSM/SH/SHF5-A/SHF507Q.Seq.d/                        549   e-155
SHD795 (SHD795Q) /CSM/SH/SHD7-D/SHD795Q.Seq.d/                        549   e-155
CHE701 (CHE701Q) /CSM/CH/CHE7-A/CHE701Q.Seq.d/                        549   e-155
AHN458 (AHN458Q) /CSM/AH/AHN4-C/AHN458Q.Seq.d/                        549   e-155
AHL609 (AHL609Q) /CSM/AH/AHL6-A/AHL609Q.Seq.d/                        549   e-155
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   0.021  12
BX248586|BX248586.1 Blochmannia floridanus complete genome; segment 3/3.    48   0.039  7
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    38   0.052  6
AC005303|AC005303.1 Homo sapiens chromosome 17, clone hRPK.488_L_1, complete sequence.    44   0.055  4
AC087705|AC087705.1 Homo sapiens clone RP11-338M20, LOW-PASS SEQUENCE SAMPLING.    38   0.066  5
AL031655|AL031655.8 Human DNA sequence from clone RP1-134N8 on chromosome 20p12.  Contains STSs, GSSs and a CpG island.    38   0.15   7
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   0.16   12
AC025254|AC025254.14 Homo sapiens 12 BAC RP11-1041F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44   0.35   3
AE017339|AE017339.1 Mycoplasma mobile 163K section 3 of 3 of the complete genome.    36   0.37   12
AL136100|AL136100.12 Human DNA sequence from clone RP11-534P19 on chromosome 6 Contains  STSs and GSSs.    38   0.37   5
dna update 2004. 6.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC152347_1(AC152347|pid:none) Medicago truncatula clone mth2-28c...    55   5e-06
AC138131_5(AC138131|pid:none) Medicago truncatula clone mth2-21h...    55   5e-06
AM270178_48(AM270178|pid:none) Aspergillus niger contig An08c023...    52   3e-05
(Q9NIF3) RecName: Full=Ubiquilin; AltName: Full=Suppressor of No...    52   3e-05
EU967057_1(EU967057|pid:none) Zea mays clone 299191 unknown mRNA.      52   4e-05
(P48510) RecName: Full=Ubiquitin domain-containing protein DSK2;...    52   6e-05
AE017348_176(AE017348|pid:none) Cryptococcus neoformans var. neo...    52   6e-05
BX510301_2(BX510301|pid:none) Zebrafish DNA sequence from clone ...    52   6e-05
AE017342_100(AE017342|pid:none) Cryptococcus neoformans var. neo...    50   1e-04
EU030444_4(EU030444|pid:none) Ornithorhynchus anatinus pseudoaut...    50   1e-04
protein update 2009. 5. 4
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for AHJ409 is cyt
5' end seq. ID AHJ409F
5' end seq. 
>AHJ409F.Seq
AATTTTAATAATAATAATAATAATAATAATAATAAATAAGTTATTATTATATATATTTAC
CCCTATTTATTATTATTATTTTTATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAA
TAAAAAAAATAAAAAAAAAATAAAAAAAAATGAATATTAATATAAANAAATTAGATGGTN
CAATTTATAGTATTGAAGGNGTAACTTTANAAACTACTGTACCAGAACTTAAAAAATTAA
TTGAAGCCAAATCTTCAATTTCAATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTAT
TACGTGATGATAAAACTTTGCAATTTTATAATATTGAAGATGGAGTTACATTACATTTAG
CANAAAGAGCNCCAGAAGCAAATCCATCACAATCAAATAGTGGAAGTAGTGGTAGNGGCA
GTAGTAGTACTGATAGTATTAGNGGGGGTAGTAATTCACCAATTGATAGTAATAATATAT
TGAATANNNNNNNNNN
Length of 5' end seq. 496
3' end seq. ID AHJ409Z
3' end seq. 
>AHJ409Z.Seq
NNNNNNNNNNCCAGATTCAGAGGATTACAATATTCAACAAGAGATGAGTAGTTTTAGCAA
TCAATTCGTTAGAGAGTTGGTAGATTCTTTGGCAACTTGCTTTTCAAATGGTAAAGATGG
TGCACTTGAATTTCTAGATTCATTTGTAAATCAAAAAGTTATAACACAAAGTCCAATGCT
TGCACCATTCTCTAGAATGACAAGTGAATATCTTCGTGATGCTTATGAATCCTCTCCACC
ACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACAACAACAACAACAACAAAA
TAATAACAATAGAAATACTACTACAACAACAACTACCACCACAACAACTACACCTTCAAG
ATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAACAATCGAAATTGATGAAGC
AAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTATTTTAAAGGAAAAAAGAA
ACCTACCACAAATAATAGTAATAATAATAATAATAACAACAATAACAATAACAATAATAA
TACTAGCGATATCAATAATAATAATAATAACAATAATAATAATAACAACAACTCAACCAA
TTCACCATTCGAAACTGTTTTACAAAATTNTACAGAAGGAACTCAAGTAAAATAGGAAGA
TTTAATCAAAAACGAAGAAGCCAAGGCTTTATCACAAATGTACCAAAACATCCTCAAAAA
ATAAAAACTTCTCCTCAAAAACATGTAAATAATAAATAAAGNA
Length of 3' end seq. 763
Connected seq. ID AHJ409P
Connected seq. 
>AHJ409P.Seq
AATTTTAATAATAATAATAATAATAATAATAATAAATAAGTTATTATTATATATATTTAC
CCCTATTTATTATTATTATTTTTATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAA
TAAAAAAAATAAAAAAAAAATAAAAAAAAATGAATATTAATATAAANAAATTAGATGGTN
CAATTTATAGTATTGAAGGNGTAACTTTANAAACTACTGTACCAGAACTTAAAAAATTAA
TTGAAGCCAAATCTTCAATTTCAATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTAT
TACGTGATGATAAAACTTTGCAATTTTATAATATTGAAGATGGAGTTACATTACATTTAG
CANAAAGAGCNCCAGAAGCAAATCCATCACAATCAAATAGTGGAAGTAGTGGTAGNGGCA
GTAGTAGTACTGATAGTATTAGNGGGGGTAGTAATTCACCAATTGATAGTAATAATATAT
TGAATA----------CCAGATTCAGAGGATTACAATATTCAACAAGAGATGAGTAGTTT
TAGCAATCAATTCGTTAGAGAGTTGGTAGATTCTTTGGCAACTTGCTTTTCAAATGGTAA
AGATGGTGCACTTGAATTTCTAGATTCATTTGTAAATCAAAAAGTTATAACACAAAGTCC
AATGCTTGCACCATTCTCTAGAATGACAAGTGAATATCTTCGTGATGCTTATGAATCCTC
TCCACCACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACAACAACAACAACA
ACAAAATAATAACAATAGAAATACTACTACAACAACAACTACCACCACAACAACTACACC
TTCAAGATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAACAATCGAAATTGA
TGAAGCAAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTATTTTAAAGGAAA
AAAGAAACCTACCACAAATAATAGTAATAATAATAATAATAACAACAATAACAATAACAA
TAATAATACTAGCGATATCAATAATAATAATAATAACAATAATAATAATAACAACAACTC
AACCAATTCACCATTCGAAACTGTTTTACAAAATTNTACAGAAGGAACTCAAGTAAAATA
GGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTTATCACAAATGTACCAAAACATCCT
CAAAAAATAAAAACTTCTCCTCAAAAACATGTAAATAATAAATAAAGNA
Length of connected seq. 1239
Full length Seq ID -
Full length Seq. -
Length of full length seq. -