>AHJ456 (AHJ456Q) /CSM/AH/AHJ4-C/AHJ456Q.Seq.d/
TTTTTTTTNATATTAAGTAAACACACAAATAAAAACATATTACATCAATTTTTATTTTAT
ATTTATTTCTTTTTCAACTTTAATTAAATAGTAACAATAAAAAAATAAAACAAATTTTAA
AAAAAAAAXXXXXXXXXX

FFXILSKHTNKNILHQFLFYIYFFFNFN*ivtikk*nkf*kk---

Frame A:
FFXILSKHTNKNILHQFLFYIYFFFNFN*ivtikk*nkf*kk---


Frame B:
ffxy*vntqiktyyinfyfifisfstlik**q*knktnfkkk---


Frame C:
ffxik*thk*khitsifilylflfql*lnsnnkkikqilkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO789 (VHO789Q) /CSM/VH/VHO7-D/VHO789Q.Seq.d/                         76   1e-13
SHK880 (SHK880Q) /CSM/SH/SHK8-D/SHK880Q.Seq.d/                         76   1e-13
CFH639 (CFH639Q) /CSM/CF/CFH6-B/CFH639Q.Seq.d/                         76   1e-13
AHJ456 (AHJ456Q) /CSM/AH/AHJ4-C/AHJ456Q.Seq.d/                         76   1e-13
AHI389 (AHI389Q) /CSM/AH/AHI3-D/AHI389Q.Seq.d/                         76   1e-13
AHD228 (AHD228Q) /CSM/AH/AHD2-B/AHD228Q.Seq.d/                         76   1e-13
SHA482 (SHA482Q) /CSM/SH/SHA4-D/SHA482Q.Seq.d/                         74   6e-13
SFG722 (SFG722Q) /CSM/SF/SFG7-A/SFG722Q.Seq.d/                         74   6e-13
AHH493 (AHH493Q) /CSM/AH/AHH4-D/AHH493Q.Seq.d/                         74   6e-13
AHA887 (AHA887Q) /CSM/AH/AHA8-D/AHA887Q.Seq.d/                         74   6e-13

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF044255|AF044255.1 Dictyostelium discoideum NOSA (nosA) mRNA, complete cds.    76   3e-19  2
X85538|X85538.1 Gallus gallus microsatellite DNA GgaMU143.         46   0.12   1
BX571831|BX571831.7 Zebrafish DNA sequence from clone DKEY-266J11 in linkage group 18.    38   0.41   3
AC119706|AC119706.5 Rattus norvegicus clone CH230-80C7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   0.49   1
AC098248|AC098248.4 Rattus norvegicus clone CH230-1E7, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   0.49   1
AC111399|AC111399.3 Rattus norvegicus clone CH230-138L13, *** SEQUENCING IN PROGRESS ***, 36 unordered pieces.    44   0.49   1
AC149782|AC149782.1 Bos taurus clone CH240-6M21, WORKING DRAFT SEQUENCE, 14 unordered pieces.    44   0.49   1
BE297386|BE297386.1 601178011F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:3533187 5', mRNA sequence.    44   0.49   1
AC098109|AC098109.6 Rattus norvegicus clone CH230-126I13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   0.49   1
AC104178|AC104178.6 Rattus norvegicus clone CH230-166M12, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44   0.49   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 63,656,110

 psg: 0.95  gvh: 0.17  alm: 0.48  top: 0.60  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for AHJ456 is nuc

>AHJ456F.Seq
TTTTTTTTNATATTAAGTAAACACACAAATAAAAACATATTACATCAATTTTTATTTTAT
ATTTATTTCTTTTTCAACTTTAATTAAATAGTAACAATAAAAAAATAAAACAAATTTTAA
AAAAAAAANNNNNNNNNN