AHM286 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AHM286
Library	AH (Link to library)
Clone ID	AHM286 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	-
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHM2-D/AHM286Q.Seq.d/
Representative seq. ID	AHM286P (Link to Original site)
Representative DNA sequence	>AHM286 (AHM286Q) /CSM/AH/AHM2-D/AHM286Q.Seq.d/ ACTGTTGGCCTACTGGCAAATGAAACCTTTTTCAAGCAAATCTTAAAAATTTGGTTATTC AAGTTAAAAGTGGTGAAAGCAAAGTCAAAGCTATTGAAAAATTGGTTTCCGATTATTTAA ATTCAAATCATTCATCAAAATCTATCAAGNAAGTTTCTAGGTTCTCATAAAATCTATGTA AATGATAAACTATTGTTTTTAGAAGAACTTAAAGAAAAGGGAATTGAAATAATCTCAAAA TCAATGAGCATGCAAGACTTTGTATTAAAGAATTCTACAAACAATTGTAAAGTTTACATT CTAAATTATTACCATTCCACTAGTAGATCAAATGAAGAAATTTGGAATCAAATTTATTTA TTAACTTTTATTCATCTAGTAAATGAAAAAAGAATTAATACCAAATTTGCAATAGTTGAT ATTGAAATTCTTGTTGATAATGATTCTTTCTCGTTTGATCCTAATCAAACAAATCCATAT ATTGAATTTTTCTTGAATGGTTTTAAAAAACAATCAAATTTTATTTTTGATTCATGTGCC AACTATATTGGAATGTATTGATTGGAAACTTTGCAGACXXXXXXXXXXTATAAAAGGACC AACCAAATACTATAAATTGTTTGGATTTGAAAGATTGTTATGCGATGAACAATACATTGT ATTGCAAAGAGTGTAAATTCAATTGTCATTATTCAAAACATATGCATATCACATATGAAA CATTTTTAATTAAAAAGGAAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAAGGAA TTGATGCAACATCTTTGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAGGAAA ATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCACAACTTTCATACTTTTTAAAAG AAAATTGCATTACAACATACCATGATACAGTCATTGAATATTTGAAAATTTGTATTGAAA ATGAAGAACTCAAATCAGATAAATCAGGTAAAAAATCAATGGAAGATAATTTAAAGTTTT TCCAAGATCAACATGATTATTTTCAAAAAAATCTTTCCAACCAACAAATCCAAAAAATCA CAACAAAAGATGTCCCAATTCTCATTGAAAAATTAAAAAACCTCAAAGAAAATGGTAAAA CACTTAGAGAATGCATCGAAGCTAATGTAAATGAACAATTAAAAACAGGCTTCAATCCAA TTGTTGTCACAAAAAATACAAATCATTCAAAAGAATGGGGTTTTATTTCTCAAGCTAAAA AACTATTTACTTTCAACCCATTAAACACATCAACGCCATCAAAAAAATATCAATATTATT GATTGCAGAAAAATTTAATAAACCTATTATTTTAT
sequence update	2002.10.25
Translated Amino Acid sequence	llaywqmkpfsskskfgysskwkqsqsykigfrlfkfksfikiyqxsfvliksm minycfknlkkrelksqnqacktlyrilqtivkftfiitiplvdqmkkfgikfiy llfi*mkkelipnlqlilkfllimilsrlilikqihilnfsMVLKNNQILFLIHVP TILECIDWKLCR--- ---IKGPTKYYKLFGFERLLCDEQYIVLQRViqlslfktyayhinifnkgngkrrc* ktnrrncnifektmgilrerngky*ekntnlttfilfkrklhynipyshi fenlykrtqirirkingrfkvfprstlfskksfqptnpknhnkrcpnshkikk pqrkwntrmhrscktiknrlqsncchkkyksfkrmgfyfssktiyfqpikhinai kkisilliaekfnkpiil
Translated Amino Acid sequence (All Frames)	Frame A: tvgllanetffkqilkiwlfklkvvkakskllknwfpiiiqiihqnlsxkflgshkiyv ndkllfleelkekgieiisksmsmqdfvlknstnnckvyilnyyhstsrsneeiwnqiyl ltfihlvnekrintkfaivdieilvdndsfsfdpnqtnpyiefflngfkkqsnfifdsca nyigmyletlq--- ---ykrtnqilivwikivmrtihciaksvnsiviiqnicishmkhflkrkwktkml knklkkelmqhlkdnglnprkklrkilmrkmkylklahnfhtfkkialqhtmiqsln ikfvlkmknsnqinqvknqwkiisfskinmiifkkifptnkskksqqkmsqfslknk tskkmvkhlenasklmmnnkqasiqllsqkiqiiqkngvlflklknyllsththqrh qkniniidcrkityyf Frame B: llaywqmkpfsskskfgysskwkqsqsykigfrlfkfksfikiyqxsfvliksm* minycfknlkkrelksqnqacktlyrilqtivkftfiitiplvdqmkkfgikfiy llfi*mkkelipnlqlilkfllimilsrlilikqihilnfsMVLKNNQILFLIHVP TILECIDWKLCR--- ---IKGPTKYYKLFGFERLLCDEQYIVLQRViqlslfktyayhinifnkgngkrrc* ktnrrncnifektmgilrerngky*ekntnlttfilfkrklhynipyshi fenlykrtqirirkingrfkvfprstlfskksfqptnpknhnkrcpnshkikk pqrkwntrmhrscktiknrlqsncchkkyksfkrmgfyfssktiyfqpikhinai kkisilliaekfnkpiil Frame C: cwptgknlfqanlknlviqvksgeskvkaieklvsdylnsnhssksikxvsrfsnlck *tivfrrtrkgnnnlkineharlcikefykqlslhskllpfh*ikrnlesnlfi nfyssskkknyqicnsynsc**fflvssnksiyiflewfktikfyffmcq lywnvlignfad--- ---kdqpntincldlkdcyamnntlyckeckfnchyskhmhityetflikkemenedvk kqieegidatslkrqwveslekeikentdekneilkissqlsyflkencittyhdtviey lkicieneelksdksgkksmednlkffqdqhdyfqknlsnqqiqkittkdvpilieklkn lkengktlrecieanvneqlktgfnpivvtkntnhskewgfisqakklftfnplntstps kkyqyylqknlinllfy
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AHM286 (AHM286Q) /CSM/AH/AHM2-D/AHM286Q.Seq.d/ 2085 0.0 AHB571 (AHB571Q) /CSM/AH/AHB5-C/AHB571Q.Seq.d/ 1065 0.0 CHN672 (CHN672Q) /CSM/CH/CHN6-C/CHN672Q.Seq.d/ 1049 0.0 AHE514 (AHE514Q) /CSM/AH/AHE5-A/AHE514Q.Seq.d/ 1029 0.0 AHP877 (AHP877Q) /CSM/AH/AHP8-D/AHP877Q.Seq.d/ 1019 0.0 SHD411 (SHD411Q) /CSM/SH/SHD4-A/SHD411Q.Seq.d/ 1017 0.0 AHQ616 (AHQ616Q) /CSM/AH/AHQ6-A/AHQ616Q.Seq.d/ 1003 0.0 AHL438 (AHL438Q) /CSM/AH/AHL4-B/AHL438Q.Seq.d/ 985 0.0 AHL141 (AHL141Q) /CSM/AH/AHL1-B/AHL141Q.Seq.d/ 985 0.0 AHK209 (AHK209Q) /CSM/AH/AHK2-A/AHK209Q.Seq.d/ 985 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AB063521\|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2. 36 3e-12 26 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 38 1e-11 28 AE017337\|AE017337.1 Mycoplasma mobile 163K section 1 of 3 of the complete genome. 32 2e-11 25 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 3e-10 23 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 8e-09 25 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 9e-09 25 AL929355\|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 34 1e-08 22 AL445563\|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3. 36 2e-08 21 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 2e-08 20 AE017339\|AE017339.1 Mycoplasma mobile 163K section 3 of 3 of the complete genome. 34 3e-08 19
dna update	2004. 7.10
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC114263_3(AC114263\|pid:none) Dictyostelium discoideum chromosom... 67 2e-09 BC152666_1(BC152666\|pid:none) Danio rerio hypothetical LOC554469... 47 0.002 CP000025_577(CP000025\|pid:none) Campylobacter jejuni RM1221, com... 46 0.003 AE014188_180(AE014188\|pid:none) Plasmodium falciparum 3D7 chromo... 46 0.003 AE014187_250(AE014187\|pid:none) Plasmodium falciparum 3D7 chromo... 45 0.008 BC155593_1(BC155593\|pid:none) Danio rerio zgc:172065, mRNA (cDNA... 44 0.013 CP001080_932(CP001080\|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 44 0.017 BC144320_1(BC144320\|pid:none) Homo sapiens coiled-coil domain co... 43 0.022 AB201172_1(AB201172\|pid:none) Homo sapiens GRDN mRNA for girdin,... 43 0.022 AM910992_27(AM910992\|pid:none) Plasmodium knowlesi strain H chro... 43 0.022
protein update	2009. 5. 7
PSORT	psg: 0.91 gvh: 0.54 alm: 0.40 top: 0.43 tms: 0.00 mit: 0.27 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 24.0 %: nuclear 16.0 %: extracellular, including cell wall 12.0 %: mitochondrial 4.0 %: vacuolar 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for AHM286 is cyt
5' end seq. ID	AHM286F
5' end seq.	>AHM286F.Seq ACTGTTGGCCTACTGGCAAATGAAACCTTTTTCAAGCAAATCTTAAAAATTTGGTTATTC AAGTTAAAAGTGGTGAAAGCAAAGTCAAAGCTATTGAAAAATTGGTTTCCGATTATTTAA ATTCAAATCATTCATCAAAATCTATCAAGNAAGTTTCTAGGTTCTCATAAAATCTATGTA AATGATAAACTATTGTTTTTAGAAGAACTTAAAGAAAAGGGAATTGAAATAATCTCAAAA TCAATGAGCATGCAAGACTTTGTATTAAAGAATTCTACAAACAATTGTAAAGTTTACATT CTAAATTATTACCATTCCACTAGTAGATCAAATGAAGAAATTTGGAATCAAATTTATTTA TTAACTTTTATTCATCTAGTAAATGAAAAAAGAATTAATACCAAATTTGCAATAGTTGAT ATTGAAATTCTTGTTGATAATGATTCTTTCTCGTTTGATCCTAATCAAACAAATCCATAT ATTGAATTTTTCTTGAATGGTTTTAAAAAACAATCAAATTTTATTTTTGATTCATGTGCC AACTATATTGGAATGTATTGATTGGAAACTTTGCAGACNNNNNNNNNN
Length of 5' end seq.	588
3' end seq. ID	AHM286Z
3' end seq.	>AHM286Z.Seq NNNNNNNNNNTATAAAAGGACCAACCAAATACTATAAATTGTTTGGATTTGAAAGATTGT TATGCGATGAACAATACATTGTATTGCAAAGAGTGTAAATTCAATTGTCATTATTCAAAA CATATGCATATCACATATGAAACATTTTTAATTAAAAAGGAAATGGAAAACGAAGATGTT AAAAAACAAATTGAAGAAGGAATTGATGCAACATCTTTGAAAAGACAATGGGTTGAATCC TTAGAGAAAGAAATTAAGGAAAATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCA CAACTTTCATACTTTTTAAAAGAAAATTGCATTACAACATACCATGATACAGTCATTGAA TATTTGAAAATTTGTATTGAAAATGAAGAACTCAAATCAGATAAATCAGGTAAAAAATCA ATGGAAGATAATTTAAAGTTTTTCCAAGATCAACATGATTATTTTCAAAAAAATCTTTCC AACCAACAAATCCAAAAAATCACAACAAAAGATGTCCCAATTCTCATTGAAAAATTAAAA AACCTCAAAGAAAATGGTAAAACACTTAGAGAATGCATCGAAGCTAATGTAAATGAACAA TTAAAAACAGGCTTCAATCCAATTGTTGTCACAAAAAATACAAATCATTCAAAAGAATGG GGTTTTATTTCTCAAGCTAAAAAACTATTTACTTTCAACCCATTAAACACATCAACGCCA TCAAAAAAATATCAATATTATTGATTGCAGAAAAATTTAATAAACCTATTATTTTAT
Length of 3' end seq.	777
Connected seq. ID	AHM286P
Connected seq.	>AHM286P.Seq ACTGTTGGCCTACTGGCAAATGAAACCTTTTTCAAGCAAATCTTAAAAATTTGGTTATTC AAGTTAAAAGTGGTGAAAGCAAAGTCAAAGCTATTGAAAAATTGGTTTCCGATTATTTAA ATTCAAATCATTCATCAAAATCTATCAAGNAAGTTTCTAGGTTCTCATAAAATCTATGTA AATGATAAACTATTGTTTTTAGAAGAACTTAAAGAAAAGGGAATTGAAATAATCTCAAAA TCAATGAGCATGCAAGACTTTGTATTAAAGAATTCTACAAACAATTGTAAAGTTTACATT CTAAATTATTACCATTCCACTAGTAGATCAAATGAAGAAATTTGGAATCAAATTTATTTA TTAACTTTTATTCATCTAGTAAATGAAAAAAGAATTAATACCAAATTTGCAATAGTTGAT ATTGAAATTCTTGTTGATAATGATTCTTTCTCGTTTGATCCTAATCAAACAAATCCATAT ATTGAATTTTTCTTGAATGGTTTTAAAAAACAATCAAATTTTATTTTTGATTCATGTGCC AACTATATTGGAATGTATTGATTGGAAACTTTGCAGAC----------TATAAAAGGACC AACCAAATACTATAAATTGTTTGGATTTGAAAGATTGTTATGCGATGAACAATACATTGT ATTGCAAAGAGTGTAAATTCAATTGTCATTATTCAAAACATATGCATATCACATATGAAA CATTTTTAATTAAAAAGGAAATGGAAAACGAAGATGTTAAAAAACAAATTGAAGAAGGAA TTGATGCAACATCTTTGAAAAGACAATGGGTTGAATCCTTAGAGAAAGAAATTAAGGAAA ATACTGATGAGAAAAATGAAATACTTAAAATTAGCTCACAACTTTCATACTTTTTAAAAG AAAATTGCATTACAACATACCATGATACAGTCATTGAATATTTGAAAATTTGTATTGAAA ATGAAGAACTCAAATCAGATAAATCAGGTAAAAAATCAATGGAAGATAATTTAAAGTTTT TCCAAGATCAACATGATTATTTTCAAAAAAATCTTTCCAACCAACAAATCCAAAAAATCA CAACAAAAGATGTCCCAATTCTCATTGAAAAATTAAAAAACCTCAAAGAAAATGGTAAAA CACTTAGAGAATGCATCGAAGCTAATGTAAATGAACAATTAAAAACAGGCTTCAATCCAA TTGTTGTCACAAAAAATACAAATCATTCAAAAGAATGGGGTTTTATTTCTCAAGCTAAAA AACTATTTACTTTCAACCCATTAAACACATCAACGCCATCAAAAAAATATCAATATTATT GATTGCAGAAAAATTTAATAAACCTATTATTTTAT
Length of connected seq.	1345
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas