AHM512 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AHM512
Library	AH (Link to library)
Clone ID	AHM512 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16379-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AH/AHM5-A/AHM512Q.Seq.d/
Representative seq. ID	AHM512P (Link to Original site)
Representative DNA sequence	>AHM512 (AHM512Q) /CSM/AH/AHM5-A/AHM512Q.Seq.d/ CTGTTGGCCTACTGGTTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTG TGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACC AAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGT TGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACAT TGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACC AGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCT CTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATA TGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCG TCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCAC TATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAA TGATGGTAXXXXXXXXXXTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGT ATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCA GACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAAT GGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCT GAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAA GCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTT ACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAA ATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTCGTCTCACC TCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTT CCAATTGCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGG TTCAAAGCTTTTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTC TTACAATGAAAGATCTTTGTTTTAATAATTGATAGTGATAAAAAAAAAGAGACGAAAACT AAAATAAACATCAAATTATTGTTTTCCTTTTAAAACA
sequence update	2002.10.25
Translated Amino Acid sequence	CWPTGFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKV DITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTIL SIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKIT ISSHLTALSNMDTTSVIENNDG--- ---SDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRSTVLATIVKNGGE ADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLP NRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSRLTSKMDDSQYNEVVNFFKDHPVPIA DRSIKQDLEMVTINSNWFKAFNQDLSNWIQSKknllqkifvliidsdkkketktkin ikllfsfn
Translated Amino Acid sequence (All Frames)	Frame A: llaywffytykysknvstfsqsrisitryrtkirftstkfkgfciqrqs hynqyctnqknhypfnhnsiskdlkstsyfrylltrrscnfripritsyrkyns lhfhwyfkqikrflsfkiccqwrslywyhsirshcsscfpmftcfkiflynh yfisfncsfkygynfcnk*w--- ---SDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRSTVLATIVKNGGE ADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLP NRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSRLTSKMDDSQYNEVVNFFKDHPVPIA DRSIKQDLEMVTINSNWFKAFNQDLSNWIQSKknllqkifvliidsdkkketktkin ikllfsfn Frame B: CWPTGFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKV DITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTIL SIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKIT ISSHLTALSNMDTTSVIENNDG--- ---qipceiktlnwvcwvmlisllnvrkdsklskqtlqvyhqifvlqyllqsrmvvk linksslinilnllslkriltfwyllwlqkrnwlkkpsislylhplevkiviwfslpsq ivfvnslgltspktlikstkhlktllclvvslvvvsplkwmilntmksstfskiiqfqll ivqlnkikwlqliqigskllikiyqigfnqnknkisynerslf*livikkkrrklkt snycfpfkt Frame C: vgllvlilyiiiilkkcviiniltkidyyqiisyqvntiyildqirilysaakl tlqsillnqpkkslsiqltlkfnqrsinkllplptmnqkklqfnskmnyqlqkiqfs plislvfmtnkvsivqnmlsmvkivilvplnskplmlvvlshvlmnllnlslilksl fhlillfqiwiqlllkimmv--- ---rylvkrskhigyvgcyrcmekirsfqsrlfkftirysfystcynrkewws stnhhsisiffsrkeflpfgtcfgskrgigkspqfrfisirksrlygflyppk scssirlglphqklsnqrniklsfvwsyhwsshlngfsiqsrqlfqrssssnc* sfntrfrngynfklvqsfsrfikldsikikiksltmkdlcfnn**kkrdennkh qiivfllk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AHM512 (AHM512Q) /CSM/AH/AHM5-A/AHM512Q.Seq.d/ 2535 0.0 AHL630 (AHL630Q) /CSM/AH/AHL6-B/AHL630Q.Seq.d/ 2472 0.0 VHJ580 (VHJ580Q) /CSM/VH/VHJ5-D/VHJ580Q.Seq.d/ 2470 0.0 AHC333 (AHC333Q) /CSM/AH/AHC3-B/AHC333Q.Seq.d/ 1403 0.0 AHC135 (AHC135Q) /CSM/AH/AHC1-B/AHC135Q.Seq.d/ 1403 0.0 VHP167 (VHP167Q) /CSM/VH/VHP1-C/VHP167Q.Seq.d/ 1400 0.0 AHO535 (AHO535Q) /CSM/AH/AHO5-B/AHO535Q.Seq.d/ 1386 0.0 AHF562 (AHF562Q) /CSM/AH/AHF5-C/AHF562Q.Seq.d/ 1386 0.0 AHF358 (AHF358Q) /CSM/AH/AHF3-C/AHF358Q.Seq.d/ 1386 0.0 AHA213 (AHA213Q) /CSM/AH/AHA2-A/AHA213Q.Seq.d/ 1386 0.0
own update	2005. 1. 1
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY631393\|AY631393.1 Dictyostelium discoideum puromycin-sensitive aminopeptidase-like protein (psa) mRNA, partial cds. 80 4e-18 3 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 40 9e-10 23 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 9e-10 21 BX842644\|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 3/4. 38 5e-07 18 AL844507\|AL844507.1 Plasmodium falciparum chromosome 8. 40 6e-07 18 BX842642\|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 42 7e-06 19 AC004710\|AC004710.3 Plasmodium falciparum chromosome 12, * SEQUENCING IN PROGRESS *, 2 unordered pieces. 40 8e-06 11 AE014831\|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 36 2e-05 17 AE014849\|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence. 40 2e-05 15 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 2e-05 17
dna update	2004. 7.13
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY631393_1(AY631393\|pid:none) Dictyostelium discoideum puromycin... 221 5e-56 AF327435_1(AF327435\|pid:none) Drosophila melanogaster puromycin-... 148 4e-34 AE014296_282(AE014296\|pid:none) Drosophila melanogaster chromoso... 148 5e-34 AE014296_281(AE014296\|pid:none) Drosophila melanogaster chromoso... 148 5e-34 AM270075_67(AM270075\|pid:none) Aspergillus niger contig An04c014... 132 2e-29 AP007157_574(AP007157\|pid:none) Aspergillus oryzae RIB40 genomic... 130 1e-28 EF678434_1(EF678434\|pid:none) Picea sitchensis clone WS02921_A14... 129 2e-28 EF676179_1(EF676179\|pid:none) Picea sitchensis clone WS02717_G19... 128 4e-28 AP005572_11(AP005572\|pid:none) Oryza sativa Japonica Group genom... 127 7e-28 AM920433_347(AM920433\|pid:none) Penicillium chrysogenum Wisconsi... 126 2e-27
protein update	2009. 5. 7
PSORT	psg: 0.85 gvh: 0.34 alm: 0.44 top: 0.57 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 36.0 %: cytoplasmic 12.0 %: cytoskeletal 8.0 %: vacuolar 4.0 %: mitochondrial >> prediction for AHM512 is nuc
5' end seq. ID	AHM512F
5' end seq.	>AHM512F.Seq CTGTTGGCCTACTGGTTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTG TGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACC AAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGT TGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACAT TGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACC AGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCT CTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATA TGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCG TCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCAC TATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAA TGATGGTANNNNNNNNNN
Length of 5' end seq.	618
3' end seq. ID	AHM512Z
3' end seq.	>AHM512Z.Seq NNNNNNNNNNTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGG TGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTC AAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGA AGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAA TTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAA TTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCC AAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGA AACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTCGTCTCACCTCTAAAAT GGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGC TGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGC TTTTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATG AAAGATCTTTGTTTTAATAATTGATAGTGATAAAAAAAAAGAGACGAAAACTAAAATAAA CATCAAATTATTGTTTTCCTTTTAAAACA
Length of 3' end seq.	749
Connected seq. ID	AHM512P
Connected seq.	>AHM512P.Seq CTGTTGGCCTACTGGTTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTG TGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACC AAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGT TGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACAT TGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACC AGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCT CTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATA TGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCG TCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCAC TATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAA TGATGGTA----------TCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGT ATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCA GACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAAT GGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCT GAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAA GCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTT ACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAA ATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTCGTCTCACC TCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTT CCAATTGCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGG TTCAAAGCTTTTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTC TTACAATGAAAGATCTTTGTTTTAATAATTGATAGTGATAAAAAAAAAGAGACGAAAACT AAAATAAACATCAAATTATTGTTTTCCTTTTAAAACA
Length of connected seq.	1347
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas