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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHM614
Library AH
(Link to library)
Clone ID AHM614
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID AHM614E
(Link to Original site)
Representative DNA sequence 
>AHM614 (AHM614Q) /CSM/AH/AHM6-A/AHM614Q.Seq.d/
ACTGTTGGCCTACTGGNATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTA
AAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGA
ATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGA
TAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGA
AATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGA
TTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGC
AGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCAT
TACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCC
AATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAAC
ACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAAC
TGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACA
ANATGATAATACATCTTTCATNTNTAACTTAAACTNTGAAAAATAAAACAATATGTTTTT
TTTT
sequence update 2002.10.26
Translated Amino Acid sequence 
llaywx*infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWND
KFMSCLVGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWA
VDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQT
HTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQXDNTSFXXNLNXEK*nnmff
f
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxlnkfqk*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me*
*ihvmfgwfkc*m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltrsfsmg
s*c*ncqqs*fncwfi*ndhysips**gclqrw**lcsiansktystrf*nc*pfnsssn
tyti*lcckwkcll*ilpnnwpsysy*kr*dipkeydcytx**yifhx*lkl*kikqyvf
f


Frame B:
llaywx*infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWND
KFMSCLVGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWA
VDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQT
HTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQXDNTSFXXNLNXEK*nnmff
f


Frame C:
cwptgik*iskvkgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmvingmi
nschvwlvqmldvtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyqelfngq
lmlklstkliqllvhmk*pllhtklirllakmvmtlfncqfqnllhqilkllai*qfvkh
ihhmtml*mevftlntpqqlaklqllkkmrhsqri*llhxmiihlsxxt*txknkticff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ167 (VFJ167Q) /CSM/VF/VFJ1-C/VFJ167Q.Seq.d/                       1213   0.0
AHM614 (AHM614Q) /CSM/AH/AHM6-A/AHM614Q.Seq.d/                       1213   0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                       1207   0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                       1207   0.0
VFG405 (VFG405Q) /CSM/VF/VFG4-A/VFG405Q.Seq.d/                       1207   0.0
AHH433 (AHH433Q) /CSM/AH/AHH4-B/AHH433Q.Seq.d/                       1207   0.0
AHG682 (AHG682Q) /CSM/AH/AHG6-D/AHG682Q.Seq.d/                       1207   0.0
AHE127 (AHE127Q) /CSM/AH/AHE1-B/AHE127Q.Seq.d/                       1207   0.0
AHB807 (AHB807Q) /CSM/AH/AHB8-A/AHB807Q.Seq.d/                       1207   0.0
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                       1205   0.0
own update 2002.11.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.  1195   0.0    1
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.  1088   0.0    2
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   628   0.0    3
AC120781|AC120781.23 Pan troglodytes clone rp43-28m17, complete sequence.    48   0.20   1
AC073869|AC073869.5 Homo sapiens BAC clone RP11-109E12 from 2, complete sequence.    48   0.20   1
AC022629|AC022629.3 Homo sapiens clone RP11-24O13, WORKING DRAFT SEQUENCE, 25 unordered pieces.    48   0.20   1
AC145214|AC145214.1 Homo sapiens fosmid clone XXFOS-82587F5 from 2, complete sequence.    48   0.20   1
AC120839|AC120839.38 Pan troglodytes clone rp43-5n22, WORKING DRAFT SEQUENCE, 3 ordered pieces.    48   0.20   1
AC120782|AC120782.25 Pan troglodytes clone rp43-45g12, complete sequence.    48   0.20   1
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    30   0.42   11
dna update 2004. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   436   e-121
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   399   e-110
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    95   2e-18
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    64   6e-09
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ...    57   6e-07
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    34   4.0
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple...    34   5.2
BA000026_784(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    33   6.8
CP000383_1880(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    33   8.9
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   8.9
protein update 2009. 2.27
PSORT 

 psg: 0.77  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AHM614 is cyt
5' end seq. ID AHM614F
5' end seq. 
>AHM614F.Seq
ACTGTTGGCCTACTGGNATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTA
AAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGA
ATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGA
TAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGA
AATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGA
TTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGC
AGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCAT
TACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCC
AATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAAC
ACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAAC
TGGCCAAGTTACAGTTATTAAAAAAGANNNNNNNNNN
Length of 5' end seq. 637
3' end seq. ID AHM614Z
3' end seq. 
>AHM614Z.Seq
NNNNNNNNNNATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATG
TCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTT
GAATACAACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTC
ATGTCATGTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGAT
ACTCCAACTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACC
TCAATAAATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGAT
GTTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCA
TACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCA
AAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACA
CCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAA
GTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAANATGAT
AATACATCTTTCATNTNTAACTTAAACTNTGAAAAATAAAACAATATGTTTTTTTTT
Length of 3' end seq. 717
Connected seq. ID AHM614P
Connected seq. 
>AHM614P.Seq
ACTGTTGGCCTACTGGNATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTA
AAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGA
ATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGA
TAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGA
AATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGA
TTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGC
AGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCAT
TACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCC
AATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAAC
ACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAAC
TGGCCAAGTTACAGTTATTAAAAAAGA----------ATTAAATAAATTTCAAAAGTAAA
AGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTT
GGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAAC
AATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGT
AACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCT
CAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTA
CCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCT
GGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGT
GATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGC
CATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGTTTAC
TTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCA
AAGAATATGACTGTTACACAANATGATAATACATCTTTCATNTNTAACTTAAACTNTGAA
AAATAAAACAATATGTTTTTTTTT
Length of connected seq. 1334
Full length Seq ID AHM614E
Full length Seq. 
>AHM614E.Seq
ACTGTTGGCCTACTGGNATTAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTA
AAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGA
ATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGA
TAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGA
AATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGA
TTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGC
AGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCAT
TACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCC
AATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAAC
ACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAAC
TGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACA
ANATGATAATACATCTTTCATNTNTAACTTAAACTNTGAAAAATAAAACAATATGTTTTT
TTTT
Length of full length seq. 724