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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHO411
Library AH
(Link to library)
Clone ID AHO411
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15718-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AHO411 (AHO411Q) /CSM/AH/AHO4-A/AHO411Q.Seq.d/
XXXXXXXXXXAAGTTGTTTATACAATTATACTGAATCAACATGTGATGACAATGATGCTT
GTACTTCAGATGTATGTACAGAATATGGTTGTGAGCATTATACATATACTGGTTGTATGA
ATTGTACTAATGGAGGTTGTTTCACTACTCCAGATACATGTAATCATTATGGTTGTAATT
TCACTGGTGATGGTAAATGCTTCTTCACTCATTTAGAATGTGATGATAATGACCCATGTA
CTAAAGATCATTGCTTATATTCTGGGGATTGTTATTATGAAAAACTTACCAATTGTACAA
CCCCAACCCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGGTG
TTAATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGAAA
GATGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCCTG
GTGTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATCAG
GTACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCATG
TTATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGATC
TTCATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAAAC
CAAATATTAAAGGATGTAAAGATNATTCTTGTTGTAAATATACTCCAACTTGTAGATAAT
AATCAAAATTTTTAAAATAAANAATATCC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---SCLYNYTESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNF
TGDGKCFFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGV
NECDCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESG
TGNPHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKP
NIKGCKDXSCCKYTPTCR**skflk*xis
Translated Amino Acid sequence (All Frames) 
Frame A:
---SCLYNYTESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNF
TGDGKCFFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGV
NECDCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESG
TGNPHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKP
NIKGCKDXSCCKYTPTCR**skflk*xis


Frame B:
---vvytiilnqhvmtmmlvlqmyvqnmvvsiihilvv*ivlmevvsllqihviimvvis
lvmvnassli*nvmimthvlkiiayilgivimknlpivqpqpqlklllqlkllliillvl
mnaivalkvnivy*fldmkdvslqmmvvtvfqrkllvvlv*qlvhqhqqmvvqvttlnqv
qvihiyvidiivgvewnvmllmefqnvyhqntnv*iv*ifivknkvekhvlplkikiinq
ilkdvkxilvvnilqlvdnnqnf*nkxy


Frame C:
---lfiqly*inm**q*clyfrcmyriwl*alyiywlyely*wrlfhysrym*slwl*fh
w*w*mllhsfrm****pmy*rsllifwglll*ktyqlynpnpnsnsssnsnsy*sfywc*
*mrllp*rsilfidfwt*kmfhck*ww*rysrgnywlswcnnwytninrwwyrslh*iry
r*stfm**tsl*ewngmscy*wnsrmftikiqmfrlfrssl*ktrwknmfyh*kskl*tk
y*rm*rxfll*iysnl*iiikifkixni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHO411 (AHO411Q) /CSM/AH/AHO4-A/AHO411Q.Seq.d/                       1572   0.0
AHO161 (AHO161Q) /CSM/AH/AHO1-C/AHO161Q.Seq.d/                       1572   0.0
AHK303 (AHK303Q) /CSM/AH/AHK3-A/AHK303Q.Seq.d/                       1562   0.0
SHG812 (SHG812Q) /CSM/SH/SHG8-A/SHG812Q.Seq.d/                       1558   0.0
CHF419 (CHF419Q) /CSM/CH/CHF4-A/CHF419Q.Seq.d/                       1554   0.0
AHL540 (AHL540Q) /CSM/AH/AHL5-B/AHL540Q.Seq.d/                       1552   0.0
AHC284 (AHC284Q) /CSM/AH/AHC2-D/AHC284Q.Seq.d/                       1550   0.0
AHQ868 (AHQ868Q) /CSM/AH/AHQ8-C/AHQ868Q.Seq.d/                       1548   0.0
AHA261 (AHA261Q) /CSM/AH/AHA2-C/AHA261Q.Seq.d/                       1548   0.0
AHO377 (AHO377Q) /CSM/AH/AHO3-D/AHO377Q.Seq.d/                       1546   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***.    58   2e-04  1
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    58   2e-04  1
BX295542|BX295542.1 Homo sapiens chromosome X BAC CEPHB108F13 map Xq13 markers  PHKA1-DXS227.    40   0.003  6
AL596091|AL596091.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-125E12.    50   0.007  5
AL589678|AL589678.9 Human DNA sequence from clone RP11-74C3 on chromosome 9.    50   0.007  5
BH948963|BH948963.1 odi20c01.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    36   0.012  3
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   0.020  10
AL928982|AL928982.8 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  XXyac-23DC2.    40   0.024  12
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    36   0.035  12
AC013305|AC013305.5 Homo sapiens clone RP11-4M15, LOW-PASS SEQUENCE SAMPLING.    42   0.037  3
dna update 2003.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                503   e-141
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                254   3e-66
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 67   7e-10
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    63   9e-09
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    63   9e-09
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    59   2e-07
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    57   5e-07
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 54   8e-06
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    52   2e-05
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 52   2e-05
protein update 2009. 5. 8
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for AHO411 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AHO411Z
3' end seq. 
>AHO411Z.Seq
NNNNNNNNNNAAGTTGTTTATACAATTATACTGAATCAACATGTGATGACAATGATGCTT
GTACTTCAGATGTATGTACAGAATATGGTTGTGAGCATTATACATATACTGGTTGTATGA
ATTGTACTAATGGAGGTTGTTTCACTACTCCAGATACATGTAATCATTATGGTTGTAATT
TCACTGGTGATGGTAAATGCTTCTTCACTCATTTAGAATGTGATGATAATGACCCATGTA
CTAAAGATCATTGCTTATATTCTGGGGATTGTTATTATGAAAAACTTACCAATTGTACAA
CCCCAACCCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGGTG
TTAATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGAAA
GATGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCCTG
GTGTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATCAG
GTACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCATG
TTATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGATC
TTCATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAAAC
CAAATATTAAAGGATGTAAAGATNATTCTTGTTGTAAATATACTCCAACTTGTAGATAAT
AATCAAAATTTTTAAAATAAANAATATCC
Length of 3' end seq. 809
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -