>AHP223 (AHP223Q) /CSM/AH/AHP2-A/AHP223Q.Seq.d/
XXXXXXXXXXATACAAAAGGTAATCTTGAACGTGCTGCAGATTGGTTATTTAGTCATATC
GATAACTTGGATGAATTGGTTGCAAAGGATAATGCTTCCACTTCATCAATTAATCCTTCC
TTAATTCCTCAATCAACAACTTCACTTCAACCAGTCAGTGACGGTGTTGGTAAATATGAA
TTATTAGGTTTCATCTCTCATTTAGGTAATAATGTTACATGTGGTCATTATGTTTGTCAT
ATTAAAAAGAATAATAGATGGATTAAATTCAATGATAGACATGTTCAATTATNTGAACAA
CCNCCAAAAGAATTAGGTTATATTTATTTCTATAAAAGACAACTAAATTAAATTTTAATT
TAAATAATTAATAAATAATAAATAAATAAATAAATAATAATGAATAATAATAATATNTTA
AATCNCACTAAAAATAAATNTACTGCTNCCTCAGTGGAT

---TKGNLERAADWLFSHIDNLDELVAKDNASTSSINPSLIPQSTTSLQPVSDGVGKYEL
LGFISHLGNNVTCGHYVCHIKKNNRWIKFNDRHVQLXEQPPKELGYIYFYKRQLN*ili*
iink**ink*iimnnnnxlnxtknkxtaxsvd

Frame A:
---ykr*s*tccrlvi*syr*lg*igckg*cfhfin*sflnssinnftstsq*rcw*i*i
irfhlsfr**cymwslclsy*ke**md*iq**tcsix*ttxkrirlylfl*kttklnfnl
nn**iink*innne***yxksh*k*xycxlsg


Frame B:
---TKGNLERAADWLFSHIDNLDELVAKDNASTSSINPSLIPQSTTSLQPVSDGVGKYEL
LGFISHLGNNVTCGHYVCHIKKNNRWIKFNDRHVQLXEQPPKELGYIYFYKRQLN*ili*
iink**ink*iimnnnnxlnxtknkxtaxsvd


Frame C:
---qkvilnvlqigylvisitwmnwlqrimlplhqlilp*flnqqlhfnqsvtvlvnmny
*vssli*vimlhvvimfvilkriidglnsmidmfnyxnnxqkn*vifisikdn*ikf*fk
*linnk*ink***iiiix*ixlkinxllpqw

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO311 (VHO311Q) /CSM/VH/VHO3-A/VHO311Q.Seq.d/                        648   0.0
VHA850 (VHA850Q) /CSM/VH/VHA8-C/VHA850Q.Seq.d/                        648   0.0
AHP783 (AHP783Q) /CSM/AH/AHP7-D/AHP783Q.Seq.d/                        648   0.0
AHP223 (AHP223Q) /CSM/AH/AHP2-A/AHP223Q.Seq.d/                        648   0.0
VSC487 (VSC487Q) /CSM/VS/VSC4-D/VSC487Q.Seq.d/                        642   0.0
AHF172 (AHF172Q) /CSM/AH/AHF1-C/AHF172Q.Seq.d/                        640   0.0
SHG367 (SHG367Q) /CSM/SH/SHG3-C/SHG367Q.Seq.d/                        632   e-180
VHN875 (VHN875Q) /CSM/VH/VHN8-D/VHN875Q.Seq.d/                        624   e-178
VHI272 (VHI272Q) /CSM/VH/VHI2-C/VHI272Q.Seq.d/                        622   e-177
CHM749 (CHM749Q) /CSM/CH/CHM7-C/CHM749Q.Seq.d/                        618   e-176

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U48271|U48271.1 Dictyostelium discoideum UbpA deubiquitinase mRNA, complete cds.   648   0.0    1
CC140627|CC140627.1 NDL.31I22.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.31I22, DNA sequence.    52   0.007  1
AR348268|AR348268.1 Sequence 2879 from patent US 6583275.          48   0.10   1
AC102038|AC102038.2 Mus musculus clone RP23-248G20, WORKING DRAFT SEQUENCE, 33 unordered pieces.    46   0.32   5
AC004481|AC004481.3 Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence.    32   0.36   5
AC097701|AC097701.7 Rattus norvegicus clone CH230-40A10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46   0.41   1
BH988913|BH988913.1 oeh39h02.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46   0.41   1
AC111603|AC111603.4 Rattus norvegicus clone CH230-174I19, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   0.41   1
BH448888|BH448888.1 BOHPQ45TR BOHP Brassica oleracea genomic clone BOHPQ45, DNA sequence.    46   0.41   1
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    32   0.84   7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54201) RecName: Full=Ubiquitin carboxyl-terminal hydrolase A; ...   231   7e-60
BC079778_1(BC079778|pid:none) Xenopus laevis MGC86287 protein, m...   125   3e-28
(P56399) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   124   1e-27
(Q5R407) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   124   1e-27
S68227(S68227;S74295;G02070) ubiquitin thiolesterase (EC 3.1.2.1...   124   1e-27
AK154008_1(AK154008|pid:none) Mus musculus 2 days neonate thymus...   124   1e-27
AY892188_1(AY892188|pid:none) Synthetic construct Homo sapiens c...   124   1e-27
BC004889_1(BC004889|pid:none) Homo sapiens ubiquitin specific pe...   124   1e-27
(P45974) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   124   1e-27
CP001328_586(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   119   2e-26

 psg: 0.70  gvh: 0.40  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for AHP223 is nuc

>AHP223Z.Seq
NNNNNNNNNNATACAAAAGGTAATCTTGAACGTGCTGCAGATTGGTTATTTAGTCATATC
GATAACTTGGATGAATTGGTTGCAAAGGATAATGCTTCCACTTCATCAATTAATCCTTCC
TTAATTCCTCAATCAACAACTTCACTTCAACCAGTCAGTGACGGTGTTGGTAAATATGAA
TTATTAGGTTTCATCTCTCATTTAGGTAATAATGTTACATGTGGTCATTATGTTTGTCAT
ATTAAAAAGAATAATAGATGGATTAAATTCAATGATAGACATGTTCAATTATNTGAACAA
CCNCCAAAAGAATTAGGTTATATTTATTTCTATAAAAGACAACTAAATTAAATTTTAATT
TAAATAATTAATAAATAATAAATAAATAAATAAATAATAATGAATAATAATAATATNTTA
AATCNCACTAAAAATAAATNTACTGCTNCCTCAGTGGAT