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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHP479
Library AH
(Link to library)
Clone ID AHP479
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16439-1
Original site URL
Representative seq. ID AHP479P
(Link to Original site)
Representative DNA sequence 
>AHP479 (AHP479Q) /CSM/AH/AHP4-D/AHP479Q.Seq.d/
ACTGTTGGCCTACTGGGTTTATAATTACAAATAACTATTTTTATATTTTTATATTTATTA
TTTTTTTTAATATATTTTTTTATTTTCATTTTTTTGTATAAACTTACATAAAAAGATAAA
AAGAAAAAAATGTCTAAACCAATGGATGTAGAACAAGAACCAAAAATTGATGATGCTTTA
TATAGCAGACAACTTTATGCATTATCTCATGAAACAATGAAAAAAATTACATCAACTTCA
GTTTTAGTTGTAGGTTTACAAGGTCTTGGTATTGAAATTGTTAAAGATTTAAGTTTAGCA
GGTGTTAAATCTGTTACATTGTATGATAAAGAATTAGTTGAAATTAAAGATTTGTCTTCT
CAATTTTATTTTTCACCAGAACAAGTTGGTAAAGTTGGTANAGCAGATGCATGTTTCCAA
AAAGTTGTAGATTTAAATAATTATGTTAGAATTGATGTACATAATGGAGAATTAAGTGAT
GAATTCTTAAAGAAATTCAATGTTGTAGXXXXXXXXXXTGAAAAGGATGATGATACCAAT
CATCATATCGATTTCATTACCGCTACCTCAAATTTAAGAGCTACCAACTATGCAATCAGT
CCAGCTGATAAACATAAGACCAAAGGTATCGCCGGTAAAATCATTCCAGCTTTAGTTACC
ACTACTGCCGTAGTTGCTGGTTTCGTTTGTATCGAATTGATTAAAGTTATTCAAAATAAA
GCTTTGGAGAAATATAAGAGCACCTTTATGAATTTAGGTATCCCATTCTTTGGTTTCGTT
GAACCAATTGCCGCCCCAAAGAACAAAATTCGTGAAGGCTGGACTTGGACACTTTGGGAT
CGTTTCGATGTTGATGGTGATATCACTCTCAAGGAGTTTTTAGATCTCTTTGAAAAGAAA
CATGGTTTGGATATTTCAATGCTCTCTTGTAAAGTTACACTTTTATGTGCTCTCTTCACT
GATAAGAAAACTAAAGAGGAAAGATTAAAGATGAAAATCTCACAACTCTATGAAACCCTC
TCAAAGAAACCATTACCAAAAGATAAGAAATATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllgl*lqitififlyllffliyffififlyklt*KDKKKKMSKPMDVEQEPKIDDAL
YSRQLYALSHETMKKITSTSVLVVGLQGLGIEIVKDLSLAGVKSVTLYDKELVEIKDLSS
QFYFSPEQVGKVGXADACFQKVVDLNNYVRIDVHNGELSDEFLKKFNVV---

---EKDDDTNHHIDFITATSNLRATNYAISPADKHKTKGIAGKIIPALVTTTAVVAGFVC
IELIKVIQNKALEKYKSTFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDVDGDITL
KEFLDLFEKKHGLDISMLSCKVTLLCALFTDKKTKEERLKMKISQLYETLSKKPLPKDKK
Y
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllgl*lqitififlyllffliyffififlyklt*KDKKKKMSKPMDVEQEPKIDDAL
YSRQLYALSHETMKKITSTSVLVVGLQGLGIEIVKDLSLAGVKSVTLYDKELVEIKDLSS
QFYFSPEQVGKVGXADACFQKVVDLNNYVRIDVHNGELSDEFLKKFNVV---

---*kg**yqssyrfhyrylkfksyqlcnqss**t*dqryrr*nhssfsyhycrscwfrl
yrid*sysk*sfgei*ehlyefrypilwfr*tncrpkeqns*rldldtlgsfrc*w*yhs
qgvfrsl*ketwfgyfnall*sytfmcslh**en*rgkikdenlttl*nplketitkr*e
if

Frame B:
llaywvynyk*lflyfyiyyff*yiflfsffcinlhkkikrkkclnqwm*nknqklmmly
iadnfmhylmkq*kklhqlqf*l*vykvlvlkllki*v*qvlnllhcmikn*lklkicll
nfifhqnklvklvxqmhvskkl*i*iimlelmyimen*vmns*rnsml*---

---EKDDDTNHHIDFITATSNLRATNYAISPADKHKTKGIAGKIIPALVTTTAVVAGFVC
IELIKVIQNKALEKYKSTFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDVDGDITL
KEFLDLFEKKHGLDISMLSCKVTLLCALFTDKKTKEERLKMKISQLYETLSKKPLPKDKK
Y

Frame C:
cwptgfiitnnyfyififiiffniffyfhffv*tyikr*keknv*tngcrtrtkn**cfi
*qttlciis*nneknyinfsfscrftrswy*nc*rfkfsrc*icyiv**ris*n*rfvfs
ilfftrtsw*swxsrcmfpkscrfk*lc*n*ct*wrik**ilkeiqcc---

---krmmipiiisislplpqi*elptmqsvqlinirpkvspvksfql*lpllp*llvsfv
sn*lklfkiklwrnirapl*i*vshslvslnqlppqrtkfvkaglghfgivsmlmvisls
rsf*islkrnmvwifqcslvklhfyvlsslirklkrkd*r*kshnsmkpsqrnhyqkirn
i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHP479 (AHP479Q) /CSM/AH/AHP4-D/AHP479Q.Seq.d/                       1727   0.0
VHP810 (VHP810Q) /CSM/VH/VHP8-A/VHP810Q.Seq.d/                       1057   0.0
VHP750 (VHP750Q) /CSM/VH/VHP7-C/VHP750Q.Seq.d/                       1057   0.0
VHP205 (VHP205Q) /CSM/VH/VHP2-A/VHP205Q.Seq.d/                       1057   0.0
VHO562 (VHO562Q) /CSM/VH/VHO5-C/VHO562Q.Seq.d/                       1057   0.0
VHN736 (VHN736Q) /CSM/VH/VHN7-B/VHN736Q.Seq.d/                       1057   0.0
VHN723 (VHN723Q) /CSM/VH/VHN7-A/VHN723Q.Seq.d/                       1057   0.0
VHK395 (VHK395Q) /CSM/VH/VHK3-D/VHK395Q.Seq.d/                       1057   0.0
VHI449 (VHI449Q) /CSM/VH/VHI4-C/VHI449Q.Seq.d/                       1057   0.0
VHD792 (VHD792Q) /CSM/VH/VHD7-D/VHD792Q.Seq.d/                       1057   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB933531|CB933531.1 ri31b11.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodisequence.    60   3e-11  2
AZ930776|AZ930776.1 474.dhz58e03.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz58e03.s1, DNA sequence.    60   1e-09  2
BI737141|BI737141.1 603360753F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:5368020 5', mRNA sequence.    42   0.001  2
BZ303839|BZ303839.1 KD2618.q1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD2618, DNA sequence.    46   0.003  2
BX649445|BX649445.5 Zebrafish DNA sequence from clone DKEY-177H9 in linkage group 7.    42   0.029  8
CN760387|CN760387.1 ID0AAA28BB08RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA28BB08 5', mRNA sequence.    34   0.045  3
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    32   0.047  19
AL929307|AL929307.8 Zebrafish DNA sequence from clone CH211-85A24 in linkage group 20.    42   0.050  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.10   11
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    36   0.16   8
dna update 2004. 9. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55C16) RecName: Full=Ubiquitin-like modifier-activating enzyme...   358   1e-97
EF468345_1(EF468345|pid:none) Pisum sativum ubiquitin activating...   218   2e-55
AE017341_129(AE017341|pid:none) Cryptococcus neoformans var. neo...   201   3e-50
AB035495_1(AB035495|pid:none) Carassius auratus mRNA for ubiquit...   197   4e-49
BC047256_1(BC047256|pid:none) Xenopus laevis ubiquitin-like modi...   195   2e-48
AB040073_1(AB040073|pid:none) Xenopus laevis E1 mRNA for ubiquit...   195   2e-48
BX908809_46(BX908809|pid:none) Neurospora crassa DNA linkage gro...   194   4e-48
BC064684_1(BC064684|pid:none) Xenopus laevis ubiquitin-like modi...   192   2e-47
CR382138_755(CR382138|pid:none) Debaryomyces hansenii strain CBS...   191   3e-47
AE016819_666(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   190   8e-47
protein update 2009. 5. 9
PSORT 

 psg: 0.50  gvh: 0.52  alm: 0.27  top: 0.43  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for AHP479 is mit
5' end seq. ID AHP479F
5' end seq. 
>AHP479F.Seq
ACTGTTGGCCTACTGGGTTTATAATTACAAATAACTATTTTTATATTTTTATATTTATTA
TTTTTTTTAATATATTTTTTTATTTTCATTTTTTTGTATAAACTTACATAAAAAGATAAA
AAGAAAAAAATGTCTAAACCAATGGATGTAGAACAAGAACCAAAAATTGATGATGCTTTA
TATAGCAGACAACTTTATGCATTATCTCATGAAACAATGAAAAAAATTACATCAACTTCA
GTTTTAGTTGTAGGTTTACAAGGTCTTGGTATTGAAATTGTTAAAGATTTAAGTTTAGCA
GGTGTTAAATCTGTTACATTGTATGATAAAGAATTAGTTGAAATTAAAGATTTGTCTTCT
CAATTTTATTTTTCACCAGAACAAGTTGGTAAAGTTGGTANAGCAGATGCATGTTTCCAA
AAAGTTGTAGATTTAAATAATTATGTTAGAATTGATGTACATAATGGAGAATTAAGTGAT
GAATTCTTAAAGAAATTCAATGTTGTAGNNNNNNNNNN
Length of 5' end seq. 518
3' end seq. ID AHP479Z
3' end seq. 
>AHP479Z.Seq
NNNNNNNNNNTGAAAAGGATGATGATACCAATCATCATATCGATTTCATTACCGCTACCT
CAAATTTAAGAGCTACCAACTATGCAATCAGTCCAGCTGATAAACATAAGACCAAAGGTA
TCGCCGGTAAAATCATTCCAGCTTTAGTTACCACTACTGCCGTAGTTGCTGGTTTCGTTT
GTATCGAATTGATTAAAGTTATTCAAAATAAAGCTTTGGAGAAATATAAGAGCACCTTTA
TGAATTTAGGTATCCCATTCTTTGGTTTCGTTGAACCAATTGCCGCCCCAAAGAACAAAA
TTCGTGAAGGCTGGACTTGGACACTTTGGGATCGTTTCGATGTTGATGGTGATATCACTC
TCAAGGAGTTTTTAGATCTCTTTGAAAAGAAACATGGTTTGGATATTTCAATGCTCTCTT
GTAAAGTTACACTTTTATGTGCTCTCTTCACTGATAAGAAAACTAAAGAGGAAAGATTAA
AGATGAAAATCTCACAACTCTATGAAACCCTCTCAAAGAAACCATTACCAAAAGATAAGA
AATATTT
Length of 3' end seq. 547
Connected seq. ID AHP479P
Connected seq. 
>AHP479P.Seq
ACTGTTGGCCTACTGGGTTTATAATTACAAATAACTATTTTTATATTTTTATATTTATTA
TTTTTTTTAATATATTTTTTTATTTTCATTTTTTTGTATAAACTTACATAAAAAGATAAA
AAGAAAAAAATGTCTAAACCAATGGATGTAGAACAAGAACCAAAAATTGATGATGCTTTA
TATAGCAGACAACTTTATGCATTATCTCATGAAACAATGAAAAAAATTACATCAACTTCA
GTTTTAGTTGTAGGTTTACAAGGTCTTGGTATTGAAATTGTTAAAGATTTAAGTTTAGCA
GGTGTTAAATCTGTTACATTGTATGATAAAGAATTAGTTGAAATTAAAGATTTGTCTTCT
CAATTTTATTTTTCACCAGAACAAGTTGGTAAAGTTGGTANAGCAGATGCATGTTTCCAA
AAAGTTGTAGATTTAAATAATTATGTTAGAATTGATGTACATAATGGAGAATTAAGTGAT
GAATTCTTAAAGAAATTCAATGTTGTAG----------TGAAAAGGATGATGATACCAAT
CATCATATCGATTTCATTACCGCTACCTCAAATTTAAGAGCTACCAACTATGCAATCAGT
CCAGCTGATAAACATAAGACCAAAGGTATCGCCGGTAAAATCATTCCAGCTTTAGTTACC
ACTACTGCCGTAGTTGCTGGTTTCGTTTGTATCGAATTGATTAAAGTTATTCAAAATAAA
GCTTTGGAGAAATATAAGAGCACCTTTATGAATTTAGGTATCCCATTCTTTGGTTTCGTT
GAACCAATTGCCGCCCCAAAGAACAAAATTCGTGAAGGCTGGACTTGGACACTTTGGGAT
CGTTTCGATGTTGATGGTGATATCACTCTCAAGGAGTTTTTAGATCTCTTTGAAAAGAAA
CATGGTTTGGATATTTCAATGCTCTCTTGTAAAGTTACACTTTTATGTGCTCTCTTCACT
GATAAGAAAACTAAAGAGGAAAGATTAAAGATGAAAATCTCACAACTCTATGAAACCCTC
TCAAAGAAACCATTACCAAAAGATAAGAAATATTT
Length of connected seq. 1045
Full length Seq ID -
Full length Seq. -
Length of full length seq. -