>CFA634 (CFA634Q) /CSM/CF/CFA6-B/CFA634Q.Seq.d/
XXXXXXXXXXAGTTGGTACTAATTTAATTTTTACACAAAGAATTCAAAATTGGTGATCAA
TCAATTATTGGATTTTATATTACAGTGGCAAATTGTAGTAATTGTAGTACTCCATCACCA
ATGTTTTCAGTAACTGATCCAGCAGTTTATAGTCTTGCAGCTGATAAAAATTATTTCTAT
TATTCAACTCGTAATGGTTTATTTAGAGTACCAATGAATGGTGATGTTAGTAAAAGAATG
AAATTATCTGATAATCCAAATATTAAAGGTATCTTAAGAGATCAAACTTCCAGTGGAATT
TATTATGCTAGTAGTTTTGGTAATGGTTCTTCAATTATTAGAATTGATGCTATAGATTTT
AGAATTCAAACTCTCTATGACTATACTGGTGCTAGTAATCCTTCAACTTCAACTGGTACC
TGCCAATGTCTTTCTGCATTCACTGGTGATAATTGTTCAAATTGCAATGGTACTGTAAAT
TGGGAATCTAATCCANTTACAAATTCAAATTATCCAGTTTGTCATCCATTCTTACCGGAT
GGTTCAGTTTCATATTGTAATCAAGATTGGCAATG

---lvli*FLHKEFKIGDQSIIGFYITVANCSNCSTPSPMFSVTDPAVYSLAADKNYFYY
STRNGLFRVPMNGDVSKRMKLSDNPNIKGILRDQTSSGIYYASSFGNGSSIIRIDAIDFR
IQTLYDYTGASNPSTSTGTCQCLSAFTGDNCSNCNGTVNWESNPXTNSNYPVCHPFLPDG
SVSYCNQDWQ

Frame A:
---vgtnliftqriqnw*sinywilyysgkl**l*ysitnvfsn*sssl*scs**klfll
fns*wfi*stnew*c**kneii**sky*rylkrsnfqwnllc**fw*wffny*n*cyrf*
nsnsl*lywc**sfnfnwylpmsfcihw**lfklqwycklgi*sxykfklsslssiltgw
fsfil*srlam


Frame B:
---lvli*FLHKEFKIGDQSIIGFYITVANCSNCSTPSPMFSVTDPAVYSLAADKNYFYY
STRNGLFRVPMNGDVSKRMKLSDNPNIKGILRDQTSSGIYYASSFGNGSSIIRIDAIDFR
IQTLYDYTGASNPSTSTGTCQCLSAFTGDNCSNCNGTVNWESNPXTNSNYPVCHPFLPDG
SVSYCNQDWQ


Frame C:
---wy*fnfytknsklvinqlldfilqwqivvivvlhhqcfq*liqqfivlqlikiisii
qlvmvyleyq*mvmlvke*nyliiqilkvs*eiklpvefimlvvlvmvlqllelml*ile
fklsmtilvlvilqlqlvpanvflhslviivqiamvl*ignlixlqiqiiqfvihsyrmv
qfhivikign

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFA634 (CFA634Q) /CSM/CF/CFA6-B/CFA634Q.Seq.d/                       1114   0.0
SSF840 (SSF840Q) /CSM/SS/SSF8-B/SSF840Q.Seq.d/                         38   0.14
SSF732 (SSF732Q) /CSM/SS/SSF7-B/SSF732Q.Seq.d/                         38   0.14
SSB394 (SSB394Q) /CSM/SS/SSB3-D/SSB394Q.Seq.d/                         38   0.14
SFD114 (SFD114Q) /CSM/SF/SFD1-A/SFD114Q.Seq.d/                         38   0.14
CFA840 (CFA840Q) /CSM/CF/CFA8-B/CFA840Q.Seq.d/                         38   0.14
AFN353 (AFN353Q) /CSM/AF/AFN3-C/AFN353Q.Seq.d/                         38   0.14
AFI889 (AFI889Q) /CSM/AF/AFI8-D/AFI889Q.Seq.d/                         38   0.14
AFI343 (AFI343Q) /CSM/AF/AFI3-B/AFI343Q.Seq.d/                         38   0.14
SLI555 (SLI555Q) /CSM/SL/SLI5-C/SLI555Q.Seq.d/                         36   0.57

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC024706|AC024706.6 Homo sapiens BAC clone RP11-119J20 from 4, complete sequence.    40  0.073  4
AG229007|AG229007.1 Lotus corniculatus var. japonicus DNA, clone:LjB17e21_r.    38  0.32  2
BX572624|BX572624.6 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-21G15.    48  0.37  2
AY352277|AY352277.1 Apis mellifera complementary sex determiner (csd) gene, csd-cons28-11 allele; and EX4.8-5.8 (Ex4.8-5.8) gene, complete cds.    38  0.71  4
AC116327|AC116327.4 Mus musculus clone RP24-68L14, complete sequence.    38  0.77  5
AL669966|AL669966.10 Mouse DNA sequence from clone RP23-174K9 on chromosome 4.    48  0.95  3
AC096083|AC096083.7 Rattus norvegicus clone CH230-16F18, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  1.3  3
AC110101|AC110101.5 Rattus norvegicus clone CH230-211K5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.9  1
AC095475|AC095475.6 Rattus norvegicus clone CH230-7I5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  1.9  1
AC129552|AC129552.3 Mus musculus clone RP24-122N24, WORKING DRAFT SEQUENCE, 8 unordered pieces.    40  2.0  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin ...    58   2e-07
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    36   0.62
AE014296_1167(AE014296|pid:none) Drosophila melanogaster chromos...    36   0.81
L07288_1(L07288|pid:none) Drosophila melanogaster laminin A (Lam...    36   0.81
M96388_1(M96388|pid:none) Drosophila melanogaster laminin A chai...    36   0.81
BT032866_1(BT032866|pid:none) Drosophila melanogaster SD07123 fu...    36   0.81
(Q00174) RecName: Full=Laminin subunit alpha;          Short=Lam...    36   0.81
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    35   1.1
S00670(S00670;A26637) neurogenic repetitive locus delta protein ...    35   1.4
A31246(A31246)neurogenic protein Delta precursor - fruit fly (Dr...    35   1.4

 psg: 0.93  gvh: 0.48  alm: 0.47  top: 0.37  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for CFA634 is cyt

>CFA634Z.Seq
----------AGTTGGTACTAATTTAATTTTTACACAAAGAATTCAAAATTGGTGATCAA
TCAATTATTGGATTTTATATTACAGTGGCAAATTGTAGTAATTGTAGTACTCCATCACCA
ATGTTTTCAGTAACTGATCCAGCAGTTTATAGTCTTGCAGCTGATAAAAATTATTTCTAT
TATTCAACTCGTAATGGTTTATTTAGAGTACCAATGAATGGTGATGTTAGTAAAAGAATG
AAATTATCTGATAATCCAAATATTAAAGGTATCTTAAGAGATCAAACTTCCAGTGGAATT
TATTATGCTAGTAGTTTTGGTAATGGTTCTTCAATTATTAGAATTGATGCTATAGATTTT
AGAATTCAAACTCTCTATGACTATACTGGTGCTAGTAATCCTTCAACTTCAACTGGTACC
TGCCAATGTCTTTCTGCATTCACTGGTGATAATTGTTCAAATTGCAATGGTACTGTAAAT
TGGGAATCTAATCCANTTACAAATTCAAATTATCCAGTTTGTCATCCATTCTTACCGGAT
GGTTCAGTTTCATATTGTAATCAAGATTGGCAATG