>CFB288 (CFB288Q) /CSM/CF/CFB2-D/CFB288Q.Seq.d/
AAAACAACTCCTCTCATACGACAAATATATAAATATAGATACATAATAGTAATAATAATA
ATAATAAAAATAGAGTAAATCAAATCAAATATATTATAATATACATTAAACAACACAAAC
ACAATAACTATTAAAATGTATGGCAGAACTGCAAGAGCCTCTGAGCTCTTGGATAATTTA
AAAGGTGAGATTGATGCCCTCAACCATGAATTATCATTATATAAACACCAAAAAGATGAC
TATGAAAGAAAATTTCAAAATCAATTAGCAGAATTAAATACAATACAACAAACATTATAT
GATTTGGAGAGGGGTCAAAATAAGATGAAGATACATTATGAAGAGGAGATTAGACAATTA
AAGAGACAACTTGAACAACAAAATATAAATGCCAGTCAAAGAGATTTGAATAGTCCTTCA
ACATTTAGATCAAATAGTCCAGCTCCACCAGCACAACATAATAACAACAACAATAATATC
ATCAACAACAACAATAATAATAACAATAATAATAATAACATGCAAAGAAATACACCAACC
CCAACTATTCCTGATAAAGXXXXXXXXXXTCTTTGGATTACTCAAGCGATGGTAGATTCA
TTGTCTCTGGTAGTGGTGATAAGAAAGCAAAAATCTGGGATATTGAAAAAGGTAAATGTG
CTTTCACACTTGGTAATGAAGAAGTTGGTCCAAAGAATGGTGTAACTTCTGTTGCTATGT
CACCTGATGGTAGATTGGTTGCAGCTGGTTCATTGGATAATATTGTACGTTTATGGGATG
CTCAAACTGGTTATTTCTTAGAGAGATATGAAGGCCATTTAGATTCAGTTTATTCAGTTG
CATTCTCACCAGACGGTAAATCTTTAGCATCAGGTAGTCTTGATAAATCCTTGAAACTTT
GGGATTTATCCGGTTCTAGATCACGTTCAAGATGTAGAGCTACCTTTAATGGTCACAAAG
ATTTTGTCTTATCTGTAGCATTTTCACCAGACGGTAGTTGGTTAATTTCTGGTTCAAAGG
ATAGATCAGTCCAATTTTGGGATCCAAGAAATGGTACCACTCATATGATGTTACAAGGTC
ATAAGAATTCTGTAATTAGTGTTGCCCTCTCTCCAAAGAATAATTCTCATGGTGTGTTTG
CTACTGGTTCAGGTTATTTCCGTTCAAGATTATGGAAATATNACTCTTAAACAATTCCAC
CTCTCTCACTCTCCCTCCCCCTCCACTCTCGA

kttplirqiykyryiiviiiiikie*iksnil*YTLNNTNTITIKMYGRTARASELLDNL
KGEIDALNHELSLYKHQKDDYERKFQNQLAELNTIQQTLYDLERGQNKMKIHYEEEIRQL
KRQLEQQNINASQRDLNSPSTFRSNSPAPPAQHNNNNNNIINNNNNNNNNNNNMQRNTPT
PTIPDK---

---SLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLV
AAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSR
SRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHMMLQGHKNSVIS
VALSPKNNSHGVFATGSGYFRSRLWKYXS*tipplslslplhsr

Frame A:
kttplirqiykyryiiviiiiikie*iksnil*YTLNNTNTITIKMYGRTARASELLDNL
KGEIDALNHELSLYKHQKDDYERKFQNQLAELNTIQQTLYDLERGQNKMKIHYEEEIRQL
KRQLEQQNINASQRDLNSPSTFRSNSPAPPAQHNNNNNNIINNNNNNNNNNNNMQRNTPT
PTIPDK---

---SLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLV
AAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSR
SRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHMMLQGHKNSVIS
VALSPKNNSHGVFATGSGYFRSRLWKYXS*tipplslslplhsr

Frame B:
kqllsydkyinidt********k*sksnqiyynih*ttqtq*llkcmaelqeplsswii*
kvrlmpstmnyhyintkkmtmkenfkin*qn*iqynkhymiwrgvkir*ryimkrrldn*
rdnlnnki*mpvkei*ivlqhldqivqlhqhniitttiisstttiiitiiiitckeihqp
qlflik---

---lwitqamvdslslvvvirkqksgilkkvnvlshlvmkklvqrmv*llllchlmvdwl
qlvhwiilyvygmlklvis*rdmkai*iqfiqlhshqtvnl*hqvvlinp*nfgiypvld
hvqdvelplmvtkilsyl*hfhqtvvg*flvqridqsnfgiqemvpli*cykviril*lv
lpslqriilmvclllvqvisvqdygnxtlkqfhlshspspstl

Frame C:
nnsshttni*i*ihnsnnnnnknrvnqikyiiiyikqhkhnny*nvwqncksl*alg*fk
r*d*cpqp*iiii*tpkr*l*kkisksisrikynttnii*fgegsk*dedtl*rgd*tik
ett*ttkykcqskrfe*sfni*ik*ssststt**qqq*yhqqqq***q****hakkytnp
nys**---

---fgllkrw*ihclw*w**esknlgy*kr*mcfhtw**rswskewcnfccyvt*w*igc
swfig*yctfmgcsnwlflrei*rpfrfslfsciltrr*ifsir*s**iletlgfirf*i
tfkm*syl*wsqrfclicsiftrr*lvnfwfkg*ispilgskkwyhsydvtrs*efcn*c
cplske*fswcvcywfrlfpfkimeixllnnstsltlppppls

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFB288 (CFB288Q) /CSM/CF/CFB2-D/CFB288Q.Seq.d/                       1350   0.0
CFF441 (CFF441Q) /CSM/CF/CFF4-B/CFF441Q.Seq.d/                       1300   0.0
AFC717 (AFC717Q) /CSM/AF/AFC7-A/AFC717Q.Seq.d/                       1300   0.0
AFC711 (AFC711Q) /CSM/AF/AFC7-A/AFC711Q.Seq.d/                       1300   0.0
AFM860 (AFM860Q) /CSM/AF/AFM8-C/AFM860Q.Seq.d/                       1292   0.0
SLH208 (SLH208Q) /CSM/SL/SLH2-A/SLH208Q.Seq.d/                       1289   0.0
CFI206 (CFI206Q) /CSM/CF/CFI2-A/CFI206Q.Seq.d/                       1287   0.0
CHF196 (CHF196Q) /CSM/CH/CHF1-D/CHF196Q.Seq.d/                       1285   0.0
SLA248 (SLA248Q) /CSM/SL/SLA2-B/SLA248Q.Seq.d/                       1154   0.0
AFI775 (AFI775Q) /CSM/AF/AFI7-D/AFI775Q.Seq.d/                       1154   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF079369|AF079369.1 Dictyostelium discoideum transcriptional repressor TUP1 mRNA, complete cds.  1292   0.0    3
AL935062|AL935062.13 Zebrafish DNA sequence from clone CH211-231F23 in linkage group 9.    38   0.013  8
CL076331|CL076331.1 CH216-139E11_Sp6.1 CH216 Silurana tropicalis genomic clone CH216-139E11, genomic survey sequence.    52   0.019  1
AL112526|AL112526.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.019  1
AL112348|AL112348.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52   0.019  1
AW335599|AW335599.1 S49C6 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   0.019  1
AC091749|AC091749.8 Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence.    46   0.035  7
AP002027|AP002027.1 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:496L13.    34   0.17   2
AC097530|AC097530.3 Homo sapiens BAC clone RP11-696N14 from 4, complete sequence.    34   0.17   2
AC122215|AC122215.4 Mus musculus chromosome 16 clone RP23-106M18, complete sequence.    48   0.30   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082798_1(AY082798|pid:none) Penicillium marneffei TupA protein...   225   2e-57
AM920427_459(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   225   3e-57
AM270328_15(AM270328|pid:none) Aspergillus niger contig An15c001...   224   6e-57
AP007164_19(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...   223   8e-57
U57061_1(U57061|pid:none) Neurospora crassa rco-1 gene, complete...   215   2e-54
BT065868_1(BT065868|pid:none) Zea mays full-length cDNA clone ZM...   213   1e-53
AJ252128_1(AJ252128|pid:none) Yarrowia lipolytica tup1 gene for ...   213   1e-53
AY608603_1(AY608603|pid:none) Exophiala dermatitidis Tup1p gene,...   211   3e-53
FM992688_6(FM992688|pid:none) Candida dubliniensis CD36 chromoso...   196   1e-48
(Q09715) RecName: Full=Transcriptional repressor tup11;  &CU3296...   196   1e-48

 psg: 0.71  gvh: 0.37  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CFB288 is mit

>CFB288F.Seq
AAAACAACTCCTCTCATACGACAAATATATAAATATAGATACATAATAGTAATAATAATA
ATAATAAAAATAGAGTAAATCAAATCAAATATATTATAATATACATTAAACAACACAAAC
ACAATAACTATTAAAATGTATGGCAGAACTGCAAGAGCCTCTGAGCTCTTGGATAATTTA
AAAGGTGAGATTGATGCCCTCAACCATGAATTATCATTATATAAACACCAAAAAGATGAC
TATGAAAGAAAATTTCAAAATCAATTAGCAGAATTAAATACAATACAACAAACATTATAT
GATTTGGAGAGGGGTCAAAATAAGATGAAGATACATTATGAAGAGGAGATTAGACAATTA
AAGAGACAACTTGAACAACAAAATATAAATGCCAGTCAAAGAGATTTGAATAGTCCTTCA
ACATTTAGATCAAATAGTCCAGCTCCACCAGCACAACATAATAACAACAACAATAATATC
ATCAACAACAACAATAATAATAACAATAATAATAATAACATGCAAAGAAATACACCAACC
CCAACTATTCCTGATAAAG----------

>CFB288Z.Seq
----------TCTTTGGATTACTCAAGCGATGGTAGATTCATTGTCTCTGGTAGTGGTGA
TAAGAAAGCAAAAATCTGGGATATTGAAAAAGGTAAATGTGCTTTCACACTTGGTAATGA
AGAAGTTGGTCCAAAGAATGGTGTAACTTCTGTTGCTATGTCACCTGATGGTAGATTGGT
TGCAGCTGGTTCATTGGATAATATTGTACGTTTATGGGATGCTCAAACTGGTTATTTCTT
AGAGAGATATGAAGGCCATTTAGATTCAGTTTATTCAGTTGCATTCTCACCAGACGGTAA
ATCTTTAGCATCAGGTAGTCTTGATAAATCCTTGAAACTTTGGGATTTATCCGGTTCTAG
ATCACGTTCAAGATGTAGAGCTACCTTTAATGGTCACAAAGATTTTGTCTTATCTGTAGC
ATTTTCACCAGACGGTAGTTGGTTAATTTCTGGTTCAAAGGATAGATCAGTCCAATTTTG
GGATCCAAGAAATGGTACCACTCATATGATGTTACAAGGTCATAAGAATTCTGTAATTAG
TGTTGCCCTCTCTCCAAAGAATAATTCTCATGGTGTGTTTGCTACTGGTTCAGGTTATTT
CCGTTCAAGATTATGGAAATATNACTCTTAAACAATTCCACCTCTCTCACTCTCCCTCCC
CCTCCACTCTCGA

>CFB288P.Seq
AAAACAACTCCTCTCATACGACAAATATATAAATATAGATACATAATAGTAATAATAATA
ATAATAAAAATAGAGTAAATCAAATCAAATATATTATAATATACATTAAACAACACAAAC
ACAATAACTATTAAAATGTATGGCAGAACTGCAAGAGCCTCTGAGCTCTTGGATAATTTA
AAAGGTGAGATTGATGCCCTCAACCATGAATTATCATTATATAAACACCAAAAAGATGAC
TATGAAAGAAAATTTCAAAATCAATTAGCAGAATTAAATACAATACAACAAACATTATAT
GATTTGGAGAGGGGTCAAAATAAGATGAAGATACATTATGAAGAGGAGATTAGACAATTA
AAGAGACAACTTGAACAACAAAATATAAATGCCAGTCAAAGAGATTTGAATAGTCCTTCA
ACATTTAGATCAAATAGTCCAGCTCCACCAGCACAACATAATAACAACAACAATAATATC
ATCAACAACAACAATAATAATAACAATAATAATAATAACATGCAAAGAAATACACCAACC
CCAACTATTCCTGATAAAG----------TCTTTGGATTACTCAAGCGATGGTAGATTCA
TTGTCTCTGGTAGTGGTGATAAGAAAGCAAAAATCTGGGATATTGAAAAAGGTAAATGTG
CTTTCACACTTGGTAATGAAGAAGTTGGTCCAAAGAATGGTGTAACTTCTGTTGCTATGT
CACCTGATGGTAGATTGGTTGCAGCTGGTTCATTGGATAATATTGTACGTTTATGGGATG
CTCAAACTGGTTATTTCTTAGAGAGATATGAAGGCCATTTAGATTCAGTTTATTCAGTTG
CATTCTCACCAGACGGTAAATCTTTAGCATCAGGTAGTCTTGATAAATCCTTGAAACTTT
GGGATTTATCCGGTTCTAGATCACGTTCAAGATGTAGAGCTACCTTTAATGGTCACAAAG
ATTTTGTCTTATCTGTAGCATTTTCACCAGACGGTAGTTGGTTAATTTCTGGTTCAAAGG
ATAGATCAGTCCAATTTTGGGATCCAAGAAATGGTACCACTCATATGATGTTACAAGGTC
ATAAGAATTCTGTAATTAGTGTTGCCCTCTCTCCAAAGAATAATTCTCATGGTGTGTTTG
CTACTGGTTCAGGTTATTTCCGTTCAAGATTATGGAAATATNACTCTTAAACAATTCCAC
CTCTCTCACTCTCCCTCCCCCTCCACTCTCGA