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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD410
Library CF
(Link to library)
Clone ID CFD410
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15718-1
Original site URL
Representative seq. ID CFD410P
(Link to Original site)
Representative DNA sequence 
>CFD410 (CFD410Q) /CSM/CF/CFD4-A/CFD410Q.Seq.d/
AAAATTATGTACTGATAATGGTACTAAATGTACAGAAGTTCCAAAAGTATGTGATGATGG
TAATGCCTGTTCAAATGATAGATGTATTAGTCCCAATGGTACTTGTGCACATGAAATATT
ACAGAATTGTACTGATTGTGGTACATTTAATTGTATAACACTAGATTTATGTTCACCATT
ATCTTGTCCAACTGATGGTTCAACAACATGTGTCAGTATACCTAAAACTTGTAATGATAA
TAAACCATGTACTTTAAATCAATGTCATTCACCAGATGGTATATGCACAGCTGTACCAAT
TGAAAACTGTGTAAAGTGTAATCAAACAAACAGAGGTTGTCTTACAGTTGATTTTTGTAA
TCCAGTTGAATGTTCAGAAAATGGTGATAGTTGTATAATAACCAATAGAACTTGTAATGA
TTATAATTATTGCACAACAGATTCATGTATAAATGGACAATGTTATAATGAAATAATTCA
AAATTGTGAAAATTGTACAAATGGGATTGGATGCACAACTACAGATTTTTGCTTTCAACA
GATTTGCTCAGATAGTGGGGATACTTGTAAAACAGTCCCTTTGGATTGTAATGATGGATT
AAGTTGTACAACTGAAACTTGTCTTGGTCCAAATGGAACATGCACCCATACAATAAXXXX
XXXXXXCAACCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGG
TGTTAATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGA
AAGATGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCC
TGGTGTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATC
AGGTACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCA
TGTTATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGA
TCTTCATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAA
ACCAAATATTAAAGGATGTAAAGATGATTNCTTGTTGTAAATATACNCCAACTGTAGNAT
AATTAANCAAANTTTTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KLCTDNGTKCTEVPKVCDDGNACSNDRCISPNGTCAHEILQNCTDCGTFNCITLDLCSPL
SCPTDGSTTCVSIPKTCNDNKPCTLNQCHSPDGICTAVPIENCVKCNQTNRGCLTVDFCN
PVECSENGDSCIITNRTCNDYNYCTTDSCINGQCYNEIIQNCENCTNGIGCTTTDFCFQQ
ICSDSGDTCKTVPLDCNDGLSCTTETCLGPNGTCTHTI---

---NPTQTPPPTQTPTNHSIGVNECDCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGC
PGVTTGTPTSTDGGTGHYTESGTGNPHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCL
DLHCEKQGGKTCFTIENQNYKPNIKGCKDDXLL*iyxncxiixqxfk
Translated Amino Acid sequence (All Frames) 
Frame A:
kimy**wy*myrssksm**w*clfk**my*sqwylct*nitely*lwyi*lyntrfmfti
ilsn*wfnnmcqyt*nl****tmyfksmsftrwymhsctn*klckv*snkqrlsys*fl*
ss*mfrkw**lynnq*nl**l*llhnrfmykwtml**nnskl*klykwdwmhnyrfllst
dllr*wgyl*nspfgl**wiklyn*nlswskwnmhpyn---

---qpnsnsssnsnsy*sfywc**mrllp*rsilfidfwt*kmfhck*ww*rysrgnywl
swcnnwytninrwwyrslh*iryr*stfm**tsl*ewngmscy*wnsrmftikiqmfrlf
rssl*ktrwknmfyh*kskl*tky*rm*r*xlvvnixql*xn*xxf*

Frame B:
KLCTDNGTKCTEVPKVCDDGNACSNDRCISPNGTCAHEILQNCTDCGTFNCITLDLCSPL
SCPTDGSTTCVSIPKTCNDNKPCTLNQCHSPDGICTAVPIENCVKCNQTNRGCLTVDFCN
PVECSENGDSCIITNRTCNDYNYCTTDSCINGQCYNEIIQNCENCTNGIGCTTTDFCFQQ
ICSDSGDTCKTVPLDCNDGLSCTTETCLGPNGTCTHTI---

---NPTQTPPPTQTPTNHSIGVNECDCCPEGQYCLLIFGHERCFIANDGGDGIPEETIGC
PGVTTGTPTSTDGGTGHYTESGTGNPHLCDRHHCRSGMECHVINGIPECLPSKYKCLDCL
DLHCEKQGGKTCFTIENQNYKPNIKGCKDDXLL*iyxncxiixqxfk

Frame C:
nyvlimvlnvqkfqkyvmmvmpvqmidvlvpmvlvhmkyyrivlivvhliv*h*iyvhhy
lvqlmvqqhvsvylklvmiinhvl*invihqmvyaqlyqlktv*svikqtevvlqlifvi
qlnvqkmvivv**pielvmiiiiaqqihv*mdnvimk*fkivkivqmgldaqlqifafnr
faqivgilvkqslwivmmd*vvqlklvlvqmehapiq*---

---tqlklllqlkllliillvlmnaivalkvnivy*fldmkdvslqmmvvtvfqrkllvv
lv*qlvhqhqqmvvqvttlnqvqvihiyvidiivgvewnvmllmefqnvyhqntnv*iv*
ifivknkvekhvlplkikiinqilkdvkmixcckytptvx*lxkxlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD410 (CFD410Q) /CSM/CF/CFD4-A/CFD410Q.Seq.d/                       2210   0.0
SHC783 (SHC783Q) /CSM/SH/SHC7-D/SHC783Q.Seq.d/                        902   0.0
SHA432 (SHA432Q) /CSM/SH/SHA4-B/SHA432Q.Seq.d/                        902   0.0
AHQ393 (AHQ393Q) /CSM/AH/AHQ3-D/AHQ393Q.Seq.d/                        902   0.0
AHQ154 (AHQ154Q) /CSM/AH/AHQ1-C/AHQ154Q.Seq.d/                        902   0.0
AHP893 (AHP893Q) /CSM/AH/AHP8-D/AHP893Q.Seq.d/                        902   0.0
AHL540 (AHL540Q) /CSM/AH/AHL5-B/AHL540Q.Seq.d/                        902   0.0
AHH741 (AHH741Q) /CSM/AH/AHH7-B/AHH741Q.Seq.d/                        902   0.0
AHG660 (AHG660Q) /CSM/AH/AHG6-C/AHG660Q.Seq.d/                        902   0.0
AHE429 (AHE429Q) /CSM/AH/AHE4-B/AHE429Q.Seq.d/                        902   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL031312|AL031312.1 Human DNA sequence from clone RP1-51J23 on chromosome Xq26.3-27.3.    40   0.017  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   0.039  27
AC093472|AC093472.2 Mus musculus clone RP23-29M18, WORKING DRAFT SEQUENCE, 12 unordered pieces.    38   0.052  5
BX295542|BX295542.1 Homo sapiens chromosome X BAC CEPHB108F13 map Xq13 markers  PHKA1-DXS227.    40   0.058  6
AL589678|AL589678.9 Human DNA sequence from clone RP11-74C3 on chromosome 9.    50   0.071  1
AL596091|AL596091.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-125E12.    50   0.071  1
AL773558|AL773558.13 Zebrafish DNA sequence from clone CH211-207M11.    32   0.072  13
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            38   0.075  26
AC068205|AC068205.25 Homo sapiens chromosome 11 clone RP11-472I20 map 11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.10   7
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    32   0.14   10
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                499   e-140
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                321   3e-86
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   119   3e-25
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   118   4e-25
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   118   4e-25
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   117   6e-25
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   114   8e-24
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 93   2e-17
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    90   2e-16
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 87   1e-15
protein update 2009. 5.13
PSORT 

 psg: 0.68  gvh: 0.43  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFD410 is cyt
5' end seq. ID CFD410F
5' end seq. 
>CFD410F.Seq
AAAATTATGTACTGATAATGGTACTAAATGTACAGAAGTTCCAAAAGTATGTGATGATGG
TAATGCCTGTTCAAATGATAGATGTATTAGTCCCAATGGTACTTGTGCACATGAAATATT
ACAGAATTGTACTGATTGTGGTACATTTAATTGTATAACACTAGATTTATGTTCACCATT
ATCTTGTCCAACTGATGGTTCAACAACATGTGTCAGTATACCTAAAACTTGTAATGATAA
TAAACCATGTACTTTAAATCAATGTCATTCACCAGATGGTATATGCACAGCTGTACCAAT
TGAAAACTGTGTAAAGTGTAATCAAACAAACAGAGGTTGTCTTACAGTTGATTTTTGTAA
TCCAGTTGAATGTTCAGAAAATGGTGATAGTTGTATAATAACCAATAGAACTTGTAATGA
TTATAATTATTGCACAACAGATTCATGTATAAATGGACAATGTTATAATGAAATAATTCA
AAATTGTGAAAATTGTACAAATGGGATTGGATGCACAACTACAGATTTTTGCTTTCAACA
GATTTGCTCAGATAGTGGGGATACTTGTAAAACAGTCCCTTTGGATTGTAATGATGGATT
AAGTTGTACAACTGAAACTTGTCTTGGTCCAAATGGAACATGCACCCATACAATAA----
------
Length of 5' end seq. 656
3' end seq. ID CFD410Z
3' end seq. 
>CFD410Z.Seq
----------CAACCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTA
TTGGTGTTAATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGAC
ATGAAAGATGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTT
GTCCTGGTGTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTG
AATCAGGTACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAAT
GTCATGTTATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTT
TAGATCTTCATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATT
ATAAACCAAATATTAAAGGATGTAAAGATGATTNCTTGTTGTAAATATACNCCAACTGTA
GNATAATTAANCAAANTTTTAAAA
Length of 3' end seq. 494
Connected seq. ID CFD410P
Connected seq. 
>CFD410P.Seq
AAAATTATGTACTGATAATGGTACTAAATGTACAGAAGTTCCAAAAGTATGTGATGATGG
TAATGCCTGTTCAAATGATAGATGTATTAGTCCCAATGGTACTTGTGCACATGAAATATT
ACAGAATTGTACTGATTGTGGTACATTTAATTGTATAACACTAGATTTATGTTCACCATT
ATCTTGTCCAACTGATGGTTCAACAACATGTGTCAGTATACCTAAAACTTGTAATGATAA
TAAACCATGTACTTTAAATCAATGTCATTCACCAGATGGTATATGCACAGCTGTACCAAT
TGAAAACTGTGTAAAGTGTAATCAAACAAACAGAGGTTGTCTTACAGTTGATTTTTGTAA
TCCAGTTGAATGTTCAGAAAATGGTGATAGTTGTATAATAACCAATAGAACTTGTAATGA
TTATAATTATTGCACAACAGATTCATGTATAAATGGACAATGTTATAATGAAATAATTCA
AAATTGTGAAAATTGTACAAATGGGATTGGATGCACAACTACAGATTTTTGCTTTCAACA
GATTTGCTCAGATAGTGGGGATACTTGTAAAACAGTCCCTTTGGATTGTAATGATGGATT
AAGTTGTACAACTGAAACTTGTCTTGGTCCAAATGGAACATGCACCCATACAATAA----
------CAACCCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGG
TGTTAATGAATGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGA
AAGATGTTTCATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCC
TGGTGTAACAACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATC
AGGTACAGGTAATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCA
TGTTATTAATGGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGA
TCTTCATTGTGAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAA
ACCAAATATTAAAGGATGTAAAGATGATTNCTTGTTGTAAATATACNCCAACTGTAGNAT
AATTAANCAAANTTTTAAAA
Length of connected seq. 1150
Full length Seq ID -
Full length Seq. -
Length of full length seq. -