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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE366
Library CF
(Link to library)
Clone ID CFE366
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16245-1
Original site URL
Representative seq. ID CFE366P
(Link to Original site)
Representative DNA sequence 
>CFE366 (CFE366Q) /CSM/CF/CFE3-C/CFE366Q.Seq.d/
AAAACATAAAAAGACATATATGGAAAAAGTTTCAGAAAGAATTAAAAATTCTTTATTTGT
ACCAATAGATAATAATAATATGCAAGATTCAATAAATTCAAATGAAGTTAGTGGTCAAGT
AGCAACTTTATTTGCAAATGTACCATTAGGACCAGTAGATCCAATTTTAGGTGTTTCAAC
AGCTTTCAAAGCAGACACTGACCCAAGAAAAGTAGATACATCAGTTGGAGCATATAGAGA
TGAAAATGGTAAACCATACGTATTGAAATGTGTATTTGAAGCAGAGAAAAGATTATTGGG
AGCACCAAAAGAGTATCTCCCAATCGATGGTATTCCAGAGTTCAATAAATTATCAGCCAA
ACTTTTATATGGAGATGCAATGGTTGGCAAAGAGAAGAGAATGGTAACAGTTCAAGCATT
GTCAGGTACCGGTGCATTACGTATTGGTATCATTTTCATTCGTAAATATTTACCAGCCGG
TACCGTAGTGTACATTTCACGTCCATCATGGACCAATCATCATAACATTTGCAAGGAGAG
TGGTGTCCAATCGGCCGAATACGCCTACTACGATCCAAAGACCAAGGGTTTGGATTTCAC
TGGCATGATCAACGATATGAGAGCCGCCCCAAATGGCAGTGTCTTTGTGTTGCATCTXXX
XXXXXXXGTCACCACCGTTCNCCCTGNCCCAGAATTANCTGCACTTTGGGTCAAAGAACA
AAAAAAATGTCTGGTAGAATCAAAGATGTTCGTCAAAAGGTTTTAGATGCTCTCATCGCC
CGTAAAGTACCAGGTAATTGGGAACATATCGTCAATCAAATTGGTATGTTCGGCTATACA
GGNTTNACCAAACCACAAGTTGATATCCTTGTAAATAAATATCATATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KHKKTYMEKVSERIKNSLFVPIDNNNMQDSINSNEVSGQVATLFANVPLGPVDPILGVST
AFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAPKEYLPIDGIPEFNKLSAK
LLYGDAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGTVVYISRPSWTNHHNICKES
GVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLH---

---HHRSPXPRIXCTLGQRTKKMSGRIKDVRQKVLDALIARKVPGNWEHIVNQIGMFGYT
GXTKPQVDILVNKYHI
Translated Amino Acid sequence (All Frames) 
Frame A:
kt*kdiygksfrkn*kffictnr***yarfnkfk*s*wsssnfickctirtsrsnfrcfn
sfqsrh*pkksryiswsi*r*kw*tiriemci*srekiigstkrvspnrwysrvq*iisq
tfiwrcngwqreengnsssivryrcitywyhfhs*iftsryrsvhftsimdqss*hlqge
wcpigrirllrskdqgfgfhwhdqryesrpkwqclcvas---

---vttvxpxpelxalwvkeqkkclveskmfvkrf*mlsspvkyqvignissiklvcsai
qxxpnhklisl*iniif

Frame B:
KHKKTYMEKVSERIKNSLFVPIDNNNMQDSINSNEVSGQVATLFANVPLGPVDPILGVST
AFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAPKEYLPIDGIPEFNKLSAK
LLYGDAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGTVVYISRPSWTNHHNICKES
GVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLH---

---sppfxlxqnxlhfgsknkknvw*nqrcsskgfrcshrp*str*lgtyrqsnwyvrly
rxxqtts*ypck*isy

Frame C:
nikrhiwkkfqkelkilylyq*iiiickiq*iqmklvvk*qlylqmyh*dq*iqf*vfqq
lskqtltqek*ihqlehiemkmvnhty*nvylkqrkdywehqksisqsmvfqssinyqpn
fymemqwlakrrew*qfkhcqvpvhyvlvsfsfvniyqpvp*ctfhvhhgpiiitfarrv
vsnrpntpttiqrprvwisla*sti*eppqmavslcci---

---HHRSPXPRIXCTLGQRTKKMSGRIKDVRQKVLDALIARKVPGNWEHIVNQIGMFGYT
GXTKPQVDILVNKYHI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE366 (CFE366Q) /CSM/CF/CFE3-C/CFE366Q.Seq.d/                       1626   0.0
SFD772 (SFD772Q) /CSM/SF/SFD7-C/SFD772Q.Seq.d/                       1300   0.0
CFF461 (CFF461Q) /CSM/CF/CFF4-C/CFF461Q.Seq.d/                       1271   0.0
AFG847 (AFG847Q) /CSM/AF/AFG8-B/AFG847Q.Seq.d/                       1251   0.0
SFI567 (SFI567Q) /CSM/SF/SFI5-C/SFI567Q.Seq.d/                       1245   0.0
SFE248 (SFE248Q) /CSM/SF/SFE2-B/SFE248Q.Seq.d/                       1237   0.0
VFM103 (VFM103Q) /CSM/VF/VFM1-A/VFM103Q.Seq.d/                       1235   0.0
VFG122 (VFG122Q) /CSM/VF/VFG1-A/VFG122Q.Seq.d/                       1235   0.0
VFJ242 (VFJ242Q) /CSM/VF/VFJ2-B/VFJ242Q.Seq.d/                       1231   0.0
AFE233 (AFE233Q) /CSM/AF/AFE2-B/AFE233Q.Seq.d/                       1217   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AU001466|AU001466.1 Bombyx mori cDNA, clone fbm0460f.              54   0.004  1
AP003185|AP003185.1 Clostridium perfringens DNA, complete genome, section 1/10.    42   0.007  12
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   0.021  8
AC084576|AC084576.1 Caenorhabditis briggsae cosmid G39N24, complete sequence.    50   0.055  1
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    32   0.089  14
AC120521|AC120521.2 Canis familiaris clone RP81-392C9, WORKING DRAFT SEQUENCE, 7 ordered pieces.    40   0.091  7
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    38   0.13   10
AC120734|AC120734.4 Rattus norvegicus clone CH230-220D1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48   0.22   1
AC098547|AC098547.10 Rattus norvegicus clone CH230-103E15, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    48   0.22   1
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   0.22   9
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SF7) RecName: Full=Aspartate aminotransferase, cytoplasmic; ...   428   e-118
AE017353_89(AE017353|pid:none) Cryptococcus neoformans var. neof...   184   3e-45
EF085256_1(EF085256|pid:none) Picea sitchensis clone WS0274_C08 ...   183   7e-45
(P26563) RecName: Full=Aspartate aminotransferase P2, mitochondr...   183   7e-45
EF676549_1(EF676549|pid:none) Picea sitchensis clone WS02741_M01...   182   1e-44
S60967_1(S60967|pid:none) Glycine max aspartate aminotransferase...   182   1e-44
L09702_1(L09702|pid:none) Glycine max (clone pSAT17) aspartate a...   182   1e-44
AY157306_1(AY157306|pid:none) Oryza sativa aspartate aminotransf...   181   3e-44
FN297819_1(FN297819|pid:none) Gibberella fujikuroi mRNA for puta...   180   5e-44
S39926(S39926)aspartate transaminase (EC 2.6.1.1) chain 2c, isof...   179   8e-44
protein update 2009. 5.13
PSORT 

 psg: 0.47  gvh: 0.46  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFE366 is cyt
5' end seq. ID CFE366F
5' end seq. 
>CFE366F.Seq
AAAACATAAAAAGACATATATGGAAAAAGTTTCAGAAAGAATTAAAAATTCTTTATTTGT
ACCAATAGATAATAATAATATGCAAGATTCAATAAATTCAAATGAAGTTAGTGGTCAAGT
AGCAACTTTATTTGCAAATGTACCATTAGGACCAGTAGATCCAATTTTAGGTGTTTCAAC
AGCTTTCAAAGCAGACACTGACCCAAGAAAAGTAGATACATCAGTTGGAGCATATAGAGA
TGAAAATGGTAAACCATACGTATTGAAATGTGTATTTGAAGCAGAGAAAAGATTATTGGG
AGCACCAAAAGAGTATCTCCCAATCGATGGTATTCCAGAGTTCAATAAATTATCAGCCAA
ACTTTTATATGGAGATGCAATGGTTGGCAAAGAGAAGAGAATGGTAACAGTTCAAGCATT
GTCAGGTACCGGTGCATTACGTATTGGTATCATTTTCATTCGTAAATATTTACCAGCCGG
TACCGTAGTGTACATTTCACGTCCATCATGGACCAATCATCATAACATTTGCAAGGAGAG
TGGTGTCCAATCGGCCGAATACGCCTACTACGATCCAAAGACCAAGGGTTTGGATTTCAC
TGGCATGATCAACGATATGAGAGCCGCCCCAAATGGCAGTGTCTTTGTGTTGCATCT---
-------
Length of 5' end seq. 657
3' end seq. ID CFE366Z
3' end seq. 
>CFE366Z.Seq
----------GTCACCACCGTTCNCCCTGNCCCAGAATTANCTGCACTTTGGGTCAAAGA
ACAAAAAAAATGTCTGGTAGAATCAAAGATGTTCGTCAAAAGGTTTTAGATGCTCTCATC
GCCCGTAAAGTACCAGGTAATTGGGAACATATCGTCAATCAAATTGGTATGTTCGGCTAT
ACAGGNTTNACCAAACCACAAGTTGATATCCTTGTAAATAAATATCATATTT
Length of 3' end seq. 222
Connected seq. ID CFE366P
Connected seq. 
>CFE366P.Seq
AAAACATAAAAAGACATATATGGAAAAAGTTTCAGAAAGAATTAAAAATTCTTTATTTGT
ACCAATAGATAATAATAATATGCAAGATTCAATAAATTCAAATGAAGTTAGTGGTCAAGT
AGCAACTTTATTTGCAAATGTACCATTAGGACCAGTAGATCCAATTTTAGGTGTTTCAAC
AGCTTTCAAAGCAGACACTGACCCAAGAAAAGTAGATACATCAGTTGGAGCATATAGAGA
TGAAAATGGTAAACCATACGTATTGAAATGTGTATTTGAAGCAGAGAAAAGATTATTGGG
AGCACCAAAAGAGTATCTCCCAATCGATGGTATTCCAGAGTTCAATAAATTATCAGCCAA
ACTTTTATATGGAGATGCAATGGTTGGCAAAGAGAAGAGAATGGTAACAGTTCAAGCATT
GTCAGGTACCGGTGCATTACGTATTGGTATCATTTTCATTCGTAAATATTTACCAGCCGG
TACCGTAGTGTACATTTCACGTCCATCATGGACCAATCATCATAACATTTGCAAGGAGAG
TGGTGTCCAATCGGCCGAATACGCCTACTACGATCCAAAGACCAAGGGTTTGGATTTCAC
TGGCATGATCAACGATATGAGAGCCGCCCCAAATGGCAGTGTCTTTGTGTTGCATCT---
-------GTCACCACCGTTCNCCCTGNCCCAGAATTANCTGCACTTTGGGTCAAAGAACA
AAAAAAATGTCTGGTAGAATCAAAGATGTTCGTCAAAAGGTTTTAGATGCTCTCATCGCC
CGTAAAGTACCAGGTAATTGGGAACATATCGTCAATCAAATTGGTATGTTCGGCTATACA
GGNTTNACCAAACCACAAGTTGATATCCTTGTAAATAAATATCATATTT
Length of connected seq. 879
Full length Seq ID -
Full length Seq. -
Length of full length seq. -