CFF620 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFF620
Library	CF (Link to library)
Clone ID	CFF620 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15844-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFF6-A/CFF620Q.Seq.d/
Representative seq. ID	CFF620P (Link to Original site)
Representative DNA sequence	>CFF620 (CFF620Q) /CSM/CF/CFF6-A/CFF620Q.Seq.d/ ACATTAAAAAATATTATTTGAATAATTTGAGTTTAACAAGTTTTTAGAATAAATCATTTC TAGTTACCATTCCAACTACCTCGTTGTTTATATCAACTTTAATATTTTTAAAATTAAATA AATAAAAAATTTAAAAGAAGACAAGTATTAGAATGATGATTATATAAATTTTTATAAAAT AAAATTAATTTTTTTTTTTTTTTAAAAAATAAAAAAATTAAAAATTAAAAAACTTACTAA CTGGTAAATGTCTTAAACCCATATTTNTAAATAATTTATAAGCTTCAACAAATGAAAATA TTTACATACATGGTCTTAAATCAATAAAAGAATCTAATTCAAATTGATCAAAATTCATTT CANATAAAGGNGGNGGACTTTTTGAGGTTTCTGTTGTAAATTTATCAAAGTCAAAATTTT CATNTAAATAAATCTNTTCACCGGTNCCTNTATAGAATACACGATAAAAGAGTAGTACCA AAATATGATCTNTAAGAATGATNCCTCGGTAAAGTCTTTGATTATCATATGGACCACTAT TGATAACAGGGAAAGCATTATGATTATTTGAATTTAAAATGTTGACCAATAGTCTAACTT GGCAXXXXXXXXXXATCATTACTGCCAAAATGATTGGTACTAAATATTGTGTACCTTCAG TTAGTTCAACCATGATTACCACTATACAAACGGTCATCCTACAATAACCAGCCATCATTG CAGCTGAACCTACCAATGCATAAATACTACTATCAATATTTGTGAACCACATTGAAATGG TTTGACCGAATAACCTACCAAATCCTGCACCAACCATCATCATTGGTACAAAAAGTCCAC CTGCGACCCATAAACCACTTGACCAAATTGAAAAAAATAATGAAATCAATGTAAACACTA ATAATGGTGGACAAAAGAATTGCACCATTTCAGTATTCGATTGATCTTCACAAACACTAG TTTCAATGACAATATTCGATTGGTATCTACAATCAAATATAAAAGAGGCATAATAACAAA CTACAGATGTTACAACACTTACAAACAATGCTTCGAATAATCTTAAATAAGGATTTTGTT TTAATTTTTCTTTTCTCCATTTGTTTAAATGTATATTTAAAAACACAAAGAATGCACCTA ACAAACCACCAATTAAACCCAAGAAACAAAAACATAATAATTCTGAATACCTAAATAGAT AGAGTCTTGAGAAACCAAAAGTGAGTAAACCAGTATCATGCATATCAGGTGACGAACCAA TACCTTGTAAAAGGAAATTGGTTGTGAATGCTGCTATAACACAAGTGAAAAATGTTCTCC AAGTTAATTGACGTGACCAAAATGATGATACCTCTTCAATTGAAAATAAAACGCCGCCAA TGGGTGCACCAAATGCTGCTGCCAGCCCAGTGGCTGCACCAATTGAAATGAAATCTCTCT TATCTCTATCGTTTCTATAGGAAAGGAATAACGATGGATAGAAACCCATTGTCGATGACT TAAATTGACTAATGGCAGCACCAACTGCTGATCCAATATGAATCATTGGTCCCTCAGGTC CAACAAATAATCCAGATGAAAATGATAGTACCAATGATACAATCTTTCCTAATAATGCTC TAAATCCTAATGCTTCTCTAACTTTAACACCATTTAAAATTCCTTTAACTTCTGGTATAC CTGAACNACTTGCTAATGGTCCTGCCACTATCACCATTAAACANCATAAAAATACAAATA ATAAATTTAACCTAAAAA
sequence update	2003. 5. 2
Translated Amino Acid sequence	ikkyylnnlsltsfnksflvtipttslfistliflklnkkikktsirmmiiifik* nfffffkkknklknlltgkclkpifxnnlastneniyihglksikesnsnskfis xkggglfevsvvnlskskfsxkixspvpxntrksstkisxrmxprsllsygpll itgkalLFEFKMLTNSLTW--- ---IITAKMIGTKYCVPSVSSTMITTIQTVILQpaiiaaeptnaillsifvnhiemv* pnnlpnpaptiiigtksppathkpldqieknneinvntnnggqknctisvfdssqtlvs mtifdwylqsnikeaqttdvttltnnasnnlkgfcfnfsflhlfkcifkntknapnk ppikpkkqkhnnseylnrslekpkvskpvscisgdepipckrklvvnaaitqvknvlqv nrdqnddtssienktppmgapnaaaspvaapiemksllslsflernndgkpivddln lmaaptadpiiigpsgptnnpdendstndtifpnnalnpnasltltpfkipltsgipe xlangpatitikxhkntnnkfnlk
Translated Amino Acid sequence (All Frames)	Frame A: tlkniiiivqvfrinhflpfqlprclyqlyfninkkfkrrqvlelykfln kinfffflknkkiknktylvnvlnpyxiiyklqqmkiftymvlnqknliqidqnsf xikxxdflrflliyqsqnfhxnksxhrxlyrihdkrvvpkydlexlgkvfdyhmdhy qgkhydylnlkcpivlg--- ---IITAKMIGTKYCVPSVSSTMITTIQTVILQpaiiaaeptnaillsifvnhiemv pnnlpnpaptiiigtksppathkpldqieknneinvntnnggqknctisvfdssqtlvs mtifdwylqsnikeaqttdvttltnnasnnlkgfcfnfsflhlfkcifkntknapnk ppikpkkqkhnnseylnrslekpkvskpvscisgdepipckrklvvnaaitqvknvlqv nrdqnddtssienktppmgapnaaaspvaapiemksllslsflernndgkpivddln lmaaptadpiiigpsgptnnpdendstndtifpnnalnpnasltltpfkipltsgipe xlangpatitikxhkntnnkfnlk Frame B: hkilfefefnkfleiissyhsnylvvyinfnifkikiknlkedkynddyinfyki kliffffkikklkikkltnwmsthixkfisfnkkylhtwsinkrifklikihf xrxxtfgfcckfikvkifxinlftgxxieytikeyqnmixkndxsvksliiiwtti dnresimiiinvdqsnla--- ---sllpklvlnivylqlvqplplykrssynnqpslqlnlpmhkyyyqylttlkwfd rityqilhqpsslvqkvhlrpinhltklkkimksmtlimvdkriapfqysidlhkhfq qysigiynqikrhnnklqmlqhlqtmlriilnkdfvliflfsiclnvylktqrmhltn hqlnprnkniiilntidrvlrnqkvnqyhayqvtnqylvkgnwlmllhkkmfskl idvtkmmiplqlkikrrqwvhqmllpaqwlhqlknlsylyrfyrkgitmdrnplsmti dwqhqlliqyeslvpqvqqiiqmkmivpmiqsflimlilmlllhhlkflllvyln xllmvlplsplnxikiqiinltk Frame C: ikkyylnnlsltsfnksflvtipttslfistliflklnkkikktsirmmiiifik nfffffkkknklknlltgkclkpifxnnlastneniyihglksikesnsnskfis xkggglfevsvvnlskskfsxkixspvpxntrksstkisxrmxprsllsygpll itgkalLFEFKMLTNSLTW--- ---hycqndwyilctfsfnhdyhytnghptitshhcstyqcinttinicephnglt eptksctnhhhwykkstcdpttpnkknqckhwwtkelhhfsirliftntsfn dnirlvstikykrgiitnyrcyntykqcfesirilffffspfvmyikhkectqt tntqetktfipkiesetksetsimhirrtntlkeigceccyntsekcsps ltpkylfnknaangctkcccqpsgctnneislisivsigkerwiethcrlkl tngstncsnmnhwslrsnksrkyqynls*cskscfsnfntinsfnfwytt tcwschyhhtxkykipk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFF620 (CFF620Q) /CSM/CF/CFF6-A/CFF620Q.Seq.d/ 2853 0.0 VHD590 (VHD590Q) /CSM/VH/VHD5-D/VHD590Q.Seq.d/ 704 0.0 VHE257 (VHE257Q) /CSM/VH/VHE2-C/VHE257Q.Seq.d/ 587 e-166 CFI611 (CFI611Q) /CSM/CF/CFI6-A/CFI611Q.Seq.d/ 238 2e-61 AFD147 (AFD147Q) /CSM/AF/AFD1-B/AFD147Q.Seq.d/ 96 2e-18 AHF752 (AHF752Q) /CSM/AH/AHF7-C/AHF752Q.Seq.d/ 64 8e-09 SSF111 (SSF111Q) /CSM/SS/SSF1-A/SSF111Q.Seq.d/ 40 0.11 SFH285 (SFH285Q) /CSM/SF/SFH2-D/SFH285Q.Seq.d/ 40 0.11 SFH278 (SFH278Q) /CSM/SF/SFH2-D/SFH278Q.Seq.d/ 40 0.11 SFH260 (SFH260Q) /CSM/SF/SFH2-C/SFH260Q.Seq.d/ 40 0.11
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 1647 0.0 23 AF414428\|AF414428.1 Dictyostelium discoideum chloride channel protein ClcA (clcA) mRNA, complete cds. 76 7e-25 6 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 50 5e-15 19 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 48 2e-10 22 AL929359\|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5. 42 2e-08 17 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 4e-08 30 AE014836\|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence. 38 4e-08 20 AL049183\|AL049183.5 Plasmodium falciparum DNA * SEQUENCING IN PROGRESS * from MAL13P6. 42 1e-07 19 AL445564\|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3. 36 2e-07 22 AE014828\|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 46 3e-07 18
dna update	2004. 9.11
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54AX6) RecName: Full=Chloride channel protein A; &AF414428_1(... 338 5e-91 D28475_1(D28475\|pid:none) Homo sapiens KIAA0046 mRNA, partial cds. 209 2e-52 AK294764_1(AK294764\|pid:none) Homo sapiens cDNA FLJ61242 complet... 209 2e-52 BC073264_1(BC073264\|pid:none) Xenopus laevis MGC80627 protein, m... 207 9e-52 (O35454) RecName: Full=Chloride channel protein 6; Shor... 206 2e-51 AL606929_1(AL606929\|pid:none) Mouse DNA sequence from clone RP23... 206 2e-51 T24009(T24009)hypothetical protein R07B7.1 - Caenorhabditis eleg... 205 5e-51 AF319616_1(AF319616\|pid:none) Caenorhabditis elegans CLC-type ch... 205 5e-51 (Q9TT16) RecName: Full=Chloride channel protein 6; Shor... 203 1e-50 BC149961_1(BC149961\|pid:none) Bos taurus chloride channel 7, mRN... 201 7e-50
protein update	2009. 3.28
PSORT	psg: 0.91 gvh: 0.46 alm: 0.40 top: 0.60 tms: 0.00 mit: 0.38 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 32.0 %: mitochondrial 20.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: endoplasmic reticulum >> prediction for CFF620 is nuc
5' end seq. ID	CFF620F
5' end seq.	>CFF620F.Seq ACATTAAAAAATATTATTTGAATAATTTGAGTTTAACAAGTTTTTAGAATAAATCATTTC TAGTTACCATTCCAACTACCTCGTTGTTTATATCAACTTTAATATTTTTAAAATTAAATA AATAAAAAATTTAAAAGAAGACAAGTATTAGAATGATGATTATATAAATTTTTATAAAAT AAAATTAATTTTTTTTTTTTTTTAAAAAATAAAAAAATTAAAAATTAAAAAACTTACTAA CTGGTAAATGTCTTAAACCCATATTTNTAAATAATTTATAAGCTTCAACAAATGAAAATA TTTACATACATGGTCTTAAATCAATAAAAGAATCTAATTCAAATTGATCAAAATTCATTT CANATAAAGGNGGNGGACTTTTTGAGGTTTCTGTTGTAAATTTATCAAAGTCAAAATTTT CATNTAAATAAATCTNTTCACCGGTNCCTNTATAGAATACACGATAAAAGAGTAGTACCA AAATATGATCTNTAAGAATGATNCCTCGGTAAAGTCTTTGATTATCATATGGACCACTAT TGATAACAGGGAAAGCATTATGATTATTTGAATTTAAAATGTTGACCAATAGTCTAACTT GGCA----------
Length of 5' end seq.	604
3' end seq. ID	CFF620Z
3' end seq.	>CFF620Z.Seq NNNNNNNNNNATCATTACTGCCAAAATGATTGGTACTAAATATTGTGTACCTTCAGTTAG TTCAACCATGATTACCACTATACAAACGGTCATCCTACAATAACCAGCCATCATTGCAGC TGAACCTACCAATGCATAAATACTACTATCAATATTTGTGAACCACATTGAAATGGTTTG ACCGAATAACCTACCAAATCCTGCACCAACCATCATCATTGGTACAAAAAGTCCACCTGC GACCCATAAACCACTTGACCAAATTGAAAAAAATAATGAAATCAATGTAAACACTAATAA TGGTGGACAAAAGAATTGCACCATTTCAGTATTCGATTGATCTTCACAAACACTAGTTTC AATGACAATATTCGATTGGTATCTACAATCAAATATAAAAGAGGCATAATAACAAACTAC AGATGTTACAACACTTACAAACAATGCTTCGAATAATCTTAAATAAGGATTTTGTTTTAA TTTTTCTTTTCTCCATTTGTTTAAATGTATATTTAAAAACACAAAGAATGCACCTAACAA ACCACCAATTAAACCCAAGAAACAAAAACATAATAATTCTGAATACCTAAATAGATAGAG TCTTGAGAAACCAAAAGTGAGTAAACCAGTATCATGCATATCAGGTGACGAACCAATACC TTGTAAAAGGAAATTGGTTGTGAATGCTGCTATAACACAAGTGAAAAATGTTCTCCAAGT TAATTGACGTGACCAAAATGATGATACCTCTTCAATTGAAAATAAAACGCCGCCAATGGG TGCACCAAATGCTGCTGCCAGCCCAGTGGCTGCACCAATTGAAATGAAATCTCTCTTATC TCTATCGTTTCTATAGGAAAGGAATAACGATGGATAGAAACCCATTGTCGATGACTTAAA TTGACTAATGGCAGCACCAACTGCTGATCCAATATGAATCATTGGTCCCTCAGGTCCAAC AAATAATCCAGATGAAAATGATAGTACCAATGATACAATCTTTCCTAATAATGCTCTAAA TCCTAATGCTTCTCTAACTTTAACACCATTTAAAATTCCTTTAACTTCTGGTATACCTGA ACNACTTGCTAATGGTCCTGCCACTATCACCATTAAACANCATAAAAATACAAATAATAA ATTTAACCTAAAAA
Length of 3' end seq.	1154
Connected seq. ID	CFF620P
Connected seq.	>CFF620P.Seq ACATTAAAAAATATTATTTGAATAATTTGAGTTTAACAAGTTTTTAGAATAAATCATTTC TAGTTACCATTCCAACTACCTCGTTGTTTATATCAACTTTAATATTTTTAAAATTAAATA AATAAAAAATTTAAAAGAAGACAAGTATTAGAATGATGATTATATAAATTTTTATAAAAT AAAATTAATTTTTTTTTTTTTTTAAAAAATAAAAAAATTAAAAATTAAAAAACTTACTAA CTGGTAAATGTCTTAAACCCATATTTNTAAATAATTTATAAGCTTCAACAAATGAAAATA TTTACATACATGGTCTTAAATCAATAAAAGAATCTAATTCAAATTGATCAAAATTCATTT CANATAAAGGNGGNGGACTTTTTGAGGTTTCTGTTGTAAATTTATCAAAGTCAAAATTTT CATNTAAATAAATCTNTTCACCGGTNCCTNTATAGAATACACGATAAAAGAGTAGTACCA AAATATGATCTNTAAGAATGATNCCTCGGTAAAGTCTTTGATTATCATATGGACCACTAT TGATAACAGGGAAAGCATTATGATTATTTGAATTTAAAATGTTGACCAATAGTCTAACTT GGCA----------ATCATTACTGCCAAAATGATTGGTACTAAATATTGTGTACCTTCAG TTAGTTCAACCATGATTACCACTATACAAACGGTCATCCTACAATAACCAGCCATCATTG CAGCTGAACCTACCAATGCATAAATACTACTATCAATATTTGTGAACCACATTGAAATGG TTTGACCGAATAACCTACCAAATCCTGCACCAACCATCATCATTGGTACAAAAAGTCCAC CTGCGACCCATAAACCACTTGACCAAATTGAAAAAAATAATGAAATCAATGTAAACACTA ATAATGGTGGACAAAAGAATTGCACCATTTCAGTATTCGATTGATCTTCACAAACACTAG TTTCAATGACAATATTCGATTGGTATCTACAATCAAATATAAAAGAGGCATAATAACAAA CTACAGATGTTACAACACTTACAAACAATGCTTCGAATAATCTTAAATAAGGATTTTGTT TTAATTTTTCTTTTCTCCATTTGTTTAAATGTATATTTAAAAACACAAAGAATGCACCTA ACAAACCACCAATTAAACCCAAGAAACAAAAACATAATAATTCTGAATACCTAAATAGAT AGAGTCTTGAGAAACCAAAAGTGAGTAAACCAGTATCATGCATATCAGGTGACGAACCAA TACCTTGTAAAAGGAAATTGGTTGTGAATGCTGCTATAACACAAGTGAAAAATGTTCTCC AAGTTAATTGACGTGACCAAAATGATGATACCTCTTCAATTGAAAATAAAACGCCGCCAA TGGGTGCACCAAATGCTGCTGCCAGCCCAGTGGCTGCACCAATTGAAATGAAATCTCTCT TATCTCTATCGTTTCTATAGGAAAGGAATAACGATGGATAGAAACCCATTGTCGATGACT TAAATTGACTAATGGCAGCACCAACTGCTGATCCAATATGAATCATTGGTCCCTCAGGTC CAACAAATAATCCAGATGAAAATGATAGTACCAATGATACAATCTTTCCTAATAATGCTC TAAATCCTAATGCTTCTCTAACTTTAACACCATTTAAAATTCCTTTAACTTCTGGTATAC CTGAACNACTTGCTAATGGTCCTGCCACTATCACCATTAAACANCATAAAAATACAAATA ATAAATTTAACCTAAAAA
Length of connected seq.	1748
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas