>CFH180 (CFH180Q) /CSM/CF/CFH1-D/CFH180Q.Seq.d/
XXXXXXXXXXCTGTCAACACCATTTCAATTGATCAAACCAATGGTAACCTTCGTCTTGGT
GCTGGTTTCACTTCAATTTCAGATTCATCAATCACTGTAAACTGTGACTTAAGATTTAGC
CCAGCCCTTCCATCTGCTAATTACCAACCAAAATTAGAATTAATGAACTCTGCTTACGTT
TCTGGTGGTGGTTCAATTGATCCAAATACTTGGGCTTACTATACCGTTAATGTTTCAGGT
TCATCATGTACTAGAAATGATGGTACTGTCGTTACAATTACAGGTGATCAAGATAATATG
TATCTCCAATGGGGTAAAGGTGCTAATGGTAAAAATGGTAACTTTGGTCTCTCTGTCTGG
TTAAATTATGTTGATGCTGCTCTTACAAATCCATTCTTTGATATCAATGTCGATACTGTC
TGTGAAACTAATCCATCAACAAATCTCCCAGAAACTTCACCACCAACTGAACAACCAACT
GCTCCACCAGCCACTTGTCCACCAGGTTGTATCCCAGCTATCCCAGTTGTTAATGTTACT
GAAACTCCAGCTGCAGGTAATAGTGCTTCAAGTATTGAAATGTCTAAATTGGTAGNTGCT
ATCCTTTCACTCTTCATCTTAGCTTTCTTCCATTAGATAGTTTGAAATTTTAAATTTCAA
TTCCATTACAAAATATATTTTATGTTTTTTAAATTTANTTTAAAATTTTTTTA

---VNTISIDQTNGNLRLGAGFTSISDSSITVNCDLRFSPALPSANYQPKLELMNSAYVS
GGGSIDPNTWAYYTVNVSGSSCTRNDGTVVTITGDQDNMYLQWGKGANGKNGNFGLSVWL
NYVDAALTNPFFDINVDTVCETNPSTNLPETSPPTEQPTAPPATCPPGCIPAIPVVNVTE
TPAAGNSASSIEMSKLVXAILSLFILAFFH*iv*nfkfqfhykiyfmffkfxlkff

Frame A:
---cqhhfn*snqw*psswcwfhfnfrfinhckl*lki*pspsic*lptkirinelclrf
wwwfn*skylgllyr*cfrfimy*k*wycrynyr*sr*yvspmg*rc*w*kw*lwslclv
klc*ccsyksil*yqcrycl*n*sinksprnfttn*ttncstshlstrlypsypsc*cy*
nsscr**cfky*nv*igxcypftlhlsflpldslkf*isiplqnifyvf*ixfkifl


Frame B:
---VNTISIDQTNGNLRLGAGFTSISDSSITVNCDLRFSPALPSANYQPKLELMNSAYVS
GGGSIDPNTWAYYTVNVSGSSCTRNDGTVVTITGDQDNMYLQWGKGANGKNGNFGLSVWL
NYVDAALTNPFFDINVDTVCETNPSTNLPETSPPTEQPTAPPATCPPGCIPAIPVVNVTE
TPAAGNSASSIEMSKLVXAILSLFILAFFH*iv*nfkfqfhykiyfmffkfxlkff


Frame C:
---stpfqlikpmvtfvlvlvslqfqihqsl*tvt*dlaqpfhllitnqn*n**tlltfl
vvvqliqilgltiplmfqvhhvlemmvlslqlqvikiicisngvkvlmvkmvtlvslsg*
imlmlllqihslismsilsvklihqqisqklhhqlnnqllhqplvhqvvsqlsqllmllk
lqlqvivlqvlkclnw*xlsfhsss*lssir*feilnfnsitkyilcflnlx*nff

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM336 (CHM336Q) /CSM/CH/CHM3-B/CHM336Q.Seq.d/                       1243   0.0
CHC184 (CHC184Q) /CSM/CH/CHC1-D/CHC184Q.Seq.d/                       1243   0.0
CFJ413 (CFJ413Q) /CSM/CF/CFJ4-A/CFJ413Q.Seq.d/                       1243   0.0
CFJ410 (CFJ410Q) /CSM/CF/CFJ4-A/CFJ410Q.Seq.d/                       1243   0.0
CFJ356 (CFJ356Q) /CSM/CF/CFJ3-C/CFJ356Q.Seq.d/                       1243   0.0
CFJ309 (CFJ309Q) /CSM/CF/CFJ3-A/CFJ309Q.Seq.d/                       1243   0.0
CFH180 (CFH180Q) /CSM/CF/CFH1-D/CFH180Q.Seq.d/                       1243   0.0
CFK464 (CFK464Q) /CSM/CF/CFK4-C/CFK464Q.Seq.d/                       1241   0.0
CHF148 (CHF148Q) /CSM/CH/CHF1-B/CHF148Q.Seq.d/                       1237   0.0
CFK245 (CFK245Q) /CSM/CF/CFK2-B/CFK245Q.Seq.d/                       1237   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   0.006  7
AC132090|AC132090.1 Mus musculus chromosome UNK clone RP24-449D6, WORKING DRAFT SEQUENCE, 21 unordered pieces.    40   0.065  2
BH662784|BH662784.1 BOMCS08TF BO_2_3_KB Brassica oleracea genomic clone BOMCS08, DNA sequence.    46   0.67   1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40   0.80   6
AC108362|AC108362.1 Pan troglodytes clone S10883.BCM-4, WORKING DRAFT SEQUENCE, 22 unordered pieces.    34   0.87   3
U32746|U32746.1 Haemophilus influenzae Rd section 61 of 163 of the complete genome.    40   1.1    3
AC122602|AC122602.3 Rattus norvegicus clone CH230-235J8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   1.7    6
CG804892|CG804892.1 1118054F02.2EL_x1 1118 - RescueMu Grid S Zea mays genomic, genomic survey sequence.    44   2.7    1
AC096294|AC096294.6 Rattus norvegicus clone CH230-37H23, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   2.7    1
CQ414544|CQ414544.1 Sequence 21615 from Patent WO0170979.          28   4.1    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    45   0.002
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    45   0.002
CP000821_2338(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...    41   0.040
AP006840_2056(AP006840|pid:none) Symbiobacterium thermophilum IA...    34   4.9
AP009386_1612(AP009386|pid:none) Burkholderia multivorans ATCC 1...    33   8.4

 psg: 0.75  gvh: 0.51  alm: 0.27  top: 0.57  tms: 0.07  mit: 0.25  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFH180 is cyt

>CFH180Z.Seq
----------CTGTCAACACCATTTCAATTGATCAAACCAATGGTAACCTTCGTCTTGGT
GCTGGTTTCACTTCAATTTCAGATTCATCAATCACTGTAAACTGTGACTTAAGATTTAGC
CCAGCCCTTCCATCTGCTAATTACCAACCAAAATTAGAATTAATGAACTCTGCTTACGTT
TCTGGTGGTGGTTCAATTGATCCAAATACTTGGGCTTACTATACCGTTAATGTTTCAGGT
TCATCATGTACTAGAAATGATGGTACTGTCGTTACAATTACAGGTGATCAAGATAATATG
TATCTCCAATGGGGTAAAGGTGCTAATGGTAAAAATGGTAACTTTGGTCTCTCTGTCTGG
TTAAATTATGTTGATGCTGCTCTTACAAATCCATTCTTTGATATCAATGTCGATACTGTC
TGTGAAACTAATCCATCAACAAATCTCCCAGAAACTTCACCACCAACTGAACAACCAACT
GCTCCACCAGCCACTTGTCCACCAGGTTGTATCCCAGCTATCCCAGTTGTTAATGTTACT
GAAACTCCAGCTGCAGGTAATAGTGCTTCAAGTATTGAAATGTCTAAATTGGTAGNTGCT
ATCCTTTCACTCTTCATCTTAGCTTTCTTCCATTAGATAGTTTGAAATTTTAAATTTCAA
TTCCATTACAAAATATATTTTATGTTTTTTAAATTTANTTTAAAATTTTTTTA