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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI543
Library CF
(Link to library)
Clone ID CFI543
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13902-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFI543 (CFI543Q) /CSM/CF/CFI5-B/CFI543Q.Seq.d/
XXXXXXXXXXGATCATCAATTAATTGTCCAATTAATATTGAAGTTTTTCCACATTCAAAT
GAAACTCAATCAATTAAAGATGATTTATATTTAGACATAGTTTTAAAACCAGATGGAAAT
ACATCATGTATACCATCTGGTTCAAAAATTAAATTTTTACCAAGTAAATATTACTCCGGA
TATACAATTCAAATTAAAAATGATATTTTATTTGGTCACCCATATGAAGAAACAATTAGA
TTAGATTATAAAAAGGGTCAAATTGAAAAGAGCCAATATCAAAATTTCCCATCGCATATT
GAATTTAATATTGAATTATTTAATGATAAAGAAAATATAATTGAAGGATTCATTTGGTTA
AATATTTGTTACTTTTTAGGTGACTTAAAATCAAAATATAGAGTTTCAATTGGTGTTGAA
GGTGGTATTGGAAATGGTAAAAGTACATGTTTAAATGGATTTGTAAATTTATTTAATCCA
ACATTCGATTTTGTTGAATATTTTATTGCAAATCGTTCAAATGGTGACCATGTTACAAGA
TCTGTGGATTGTACATCATTAAAAGAAATTTTACAATCAAAATATGATATTCATCCTGTT
CAAGAATCTTTTAAGGATATCGATATTGTATGGACCGATACATGGGGTTTTGTAGATACT
GATGTTGAGTTAAAACATAAAGCCGAGGGTAGAATTCATCATGGTACATCAAAAAATGAT
TGTTTAATTCAACTACCAAATGAAGAATATCGTATGATTGTTTCATATTTGTGTTTCAAT
TAGAAATTTCAANAGCAACAGCAA
sequence update 2001.11.22
Translated Amino Acid sequence 
---SSINCPINIEVFPHSNETQSIKDDLYLDIVLKPDGNTSCIPSGSKIKFLPSKYYSGY
TIQIKNDILFGHPYEETIRLDYKKGQIEKSQYQNFPSHIEFNIELFNDKENIIEGFIWLN
ICYFLGDLKSKYRVSIGVEGGIGNGKSTCLNGFVNLFNPTFDFVEYFIANRSNGDHVTRS
VDCTSLKEILQSKYDIHPVQESFKDIDIVWTDTWGFVDTDVELKHKAEGRIHHGTSKNDC
LIQLPNEEYRMIVSYLCFN*kfqxqqq
Translated Amino Acid sequence (All Frames) 
Frame A:
---iin*lsn*y*sfstfk*nsin*r*fifrhsfktrwkyimytiwfkn*iftk*illri
ynsn*k*yfiwspi*rnn*irl*kgsn*kepiskfpiay*i*y*ii***rkyn*rihlvk
ylllfr*lkiki*sfnwc*rwywkw*kymfkwickfi*snirfc*ifycksfkw*pcyki
cglyiikrnftiki*ysscsrif*gyrycmdrymgfcry*c*vkt*srg*nsswyikk*l
fnsttk*risydcfifvfqleisxata


Frame B:
---SSINCPINIEVFPHSNETQSIKDDLYLDIVLKPDGNTSCIPSGSKIKFLPSKYYSGY
TIQIKNDILFGHPYEETIRLDYKKGQIEKSQYQNFPSHIEFNIELFNDKENIIEGFIWLN
ICYFLGDLKSKYRVSIGVEGGIGNGKSTCLNGFVNLFNPTFDFVEYFIANRSNGDHVTRS
VDCTSLKEILQSKYDIHPVQESFKDIDIVWTDTWGFVDTDVELKHKAEGRIHHGTSKNDC
LIQLPNEEYRMIVSYLCFN*kfqxqqq


Frame C:
---hqlivqlilkffhiqmklnqlkmiyi*t*f*nqmeihhvyhlvqklnfyqvnitpdi
qfklkmifylvthmkkqld*iikrvklkranikishrilnlilnylmikki*lkdsfg*i
fvtf*vt*nqniefqlvlkvvlemvkvhv*mdl*iyliqhsillnillqivqmvtmlqdl
wivhh*kkfynqnmifilfknllrisilygpihgvl*ilmls*nikprvefimvhqkmiv
*fnyqmkniv*lfhicvsirnfxsns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI543 (CFI543Q) /CSM/CF/CFI5-B/CFI543Q.Seq.d/                       1568   0.0
AFD190 (AFD190Q) /CSM/AF/AFD1-D/AFD190Q.Seq.d/                       1334   0.0
SFJ110 (SFJ110Q) /CSM/SF/SFJ1-A/SFJ110Q.Seq.d/                       1043   0.0
SFA634 (SFA634Q) /CSM/SF/SFA6-B/SFA634Q.Seq.d/                        710   0.0
SFJ549 (SFJ549Q) /CSM/SF/SFJ5-C/SFJ549Q.Seq.d/                        470   e-131
AFF533 (AFF533Q) /CSM/AF/AFF5-B/AFF533Q.Seq.d/                        351   1e-95
AFM710 (AFM710Q) /CSM/AF/AFM7-A/AFM710Q.Seq.d/                         94   4e-18
SFH269 (SFH269Q) /CSM/SF/SFH2-C/SFH269Q.Seq.d/                         62   1e-08
CFC584 (CFC584Q) /CSM/CF/CFC5-D/CFC584Q.Seq.d/                         60   6e-08
CHJ705 (CHJ705Q) /CSM/CH/CHJ7-A/CHJ705Q.Seq.d/                         58   2e-07
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1461   0.0    19
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    44   3e-10  9
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   1e-09  26
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   1e-08  18
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            46   2e-08  31
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    36   5e-08  18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-07  21
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   4e-07  19
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             38   9e-07  27
AL132862|AL132862.1 Caenorhabditis elegans YAC Y73F8A.             38   1e-06  15
dna update 2003.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_17(AC116305|pid:none) Dictyostelium discoideum chromoso...   519   e-146
CU468135_674(CU468135|pid:none) Erwinia tasmaniensis strain ET1/...    39   0.19
AM286415_550(AM286415|pid:none) Yersinia enterocolitica subsp. e...    39   0.25
CP000720_3442(CP000720|pid:none) Yersinia pseudotuberculosis IP ...    38   0.32
AB0055(AB0055) transcription regulator NadR nadR [imported] - Ye...    38   0.32
AY849931_1(AY849931|pid:none) Escherichia coli strain REL606 Nad...    38   0.32
U59461_89(U59461|pid:none) Mamestra configurata NPV-A strain 90/...    38   0.42
BX950851_454(BX950851|pid:none) Erwinia carotovora subsp. atrose...    37   0.55
AF539999_88(AF539999|pid:none) Mamestra configurata nucleopolyhe...    37   0.55
CP000419_653(CP000419|pid:none) Streptococcus thermophilus LMD-9...    37   0.94
protein update 2009. 5.15
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFI543 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFI543Z
3' end seq. 
>CFI543Z.Seq
NNNNNNNNNNGATCATCAATTAATTGTCCAATTAATATTGAAGTTTTTCCACATTCAAAT
GAAACTCAATCAATTAAAGATGATTTATATTTAGACATAGTTTTAAAACCAGATGGAAAT
ACATCATGTATACCATCTGGTTCAAAAATTAAATTTTTACCAAGTAAATATTACTCCGGA
TATACAATTCAAATTAAAAATGATATTTTATTTGGTCACCCATATGAAGAAACAATTAGA
TTAGATTATAAAAAGGGTCAAATTGAAAAGAGCCAATATCAAAATTTCCCATCGCATATT
GAATTTAATATTGAATTATTTAATGATAAAGAAAATATAATTGAAGGATTCATTTGGTTA
AATATTTGTTACTTTTTAGGTGACTTAAAATCAAAATATAGAGTTTCAATTGGTGTTGAA
GGTGGTATTGGAAATGGTAAAAGTACATGTTTAAATGGATTTGTAAATTTATTTAATCCA
ACATTCGATTTTGTTGAATATTTTATTGCAAATCGTTCAAATGGTGACCATGTTACAAGA
TCTGTGGATTGTACATCATTAAAAGAAATTTTACAATCAAAATATGATATTCATCCTGTT
CAAGAATCTTTTAAGGATATCGATATTGTATGGACCGATACATGGGGTTTTGTAGATACT
GATGTTGAGTTAAAACATAAAGCCGAGGGTAGAATTCATCATGGTACATCAAAAAATGAT
TGTTTAATTCAACTACCAAATGAAGAATATCGTATGATTGTTTCATATTTGTGTTTCAAT
TAGAAATTTCAANAGCAACAGCAA
Length of 3' end seq. 804
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -