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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB551
Library CH
(Link to library)
Clone ID CHB551
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11652-1
Original site URL
Representative seq. ID CHB551P
(Link to Original site)
Representative DNA sequence 
>CHB551 (CHB551Q) /CSM/CH/CHB5-C/CHB551Q.Seq.d/
ACCTTCTTGAAGCGTCTCGCTTTGATCATGTGTAGTATCTGTTCTAGAAAGCTTAATCTC
TTTCTGCCATCACACGTTGATGTGCATATTCGATTAAACTTATTTTTCTTCGAGGTGAGG
TCATATGTTTGGTGCTTGCATCATTCGACCTCTACGCATTCGCTCTGTATTGCACAACTT
CAGAGATTTACGAGAGTGCGCCTCACAAAATTAAAAAAAAAAXXXXXXXXXXCAAGATCA
ANTGGTAGAGTTATTGGTGATAAAAAGAATGCAGAACATGATGAAGCATTTGAAATGATG
TATTTAAATAGTTTACCAAAAACAAGAAGAACCACTAAAAAGATGGATTTACTCCAAAAG
AAACATTTACAAGATGCAGGTTTAGTTGATACTGATTTACATGCCTCATCTGCTGATGAA
AAATCCTCAACACCAAATAAAATAATTAAAACACCTCCACCAAAAAGAGCACCAGGTAGA
GTTAAATCAATGTTATCACCTTCTCAAGATACAGCAATGTCAAATATAGGTTCAGATAGT
GAATTAACTTCAAAATCAAATGATGAACAAGAAACTGTTAAAAGTCCTTCAAGAAATTCT
AGAATAACTCCAAAAAGAAACAGTAATACAGGTTCATCAACTCCAACAACAACAACTACA
ACTACAACACAAACACCACAACCAACAACAACAGCATTAAACACTCCAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
TFLKRLALIMCSICSRKLNLFLPSHVDVHIRLNLFFFEVRSYVWCLHHSTSTHSLCIAQL
QRFTRVRLTKLKKK---

---RSXGRVIGDKKNAEHDEAFEMMYLNSLPKTRRTTKKMDLLQKKHLQDAGLVDTDLHA
SSADEKSSTPNKIIKTPPPKRAPGRVKSMLSPSQDTAMSNIGSDSELTSKSNDEQETVKS
PSRNSRITPKRNSNTGSSTPTTTTTTTTQTPQPTTTALNTPT
Translated Amino Acid sequence (All Frames) 
Frame A:
TFLKRLALIMCSICSRKLNLFLPSHVDVHIRLNLFFFEVRSYVWCLHHSTSTHSLCIAQL
QRFTRVRLTKLKKK---

---qdqxvellvikrmqnmmkhlk*ci*ivyqkqeeplkrwiyskrniykmqv*liliym
phllmknpqhqik*lkhlhqkehqvelnqcyhllkiqqcqi*vqivn*lqnqmmnkkllk
vlqeile*lqketviqvhqlqqqqlqlqhkhhnqqqqh*tlq

Frame B:
ps*svsl*scvvsvleslisfchhtlmcifd*tyfssr*ghmfgaciirplrirsvlhnf
rdlrecasqn*kk---

---kixw*syw**kecrt**si*ndvfk*ftknkknh*kdgftpketftrcrfs*y*ftc
lic**kilntk*nn*ntstkkstr*s*invitfsrysnvkyrfr**infkik**trnc*k
sfkkf*nnskkkq*yrfinsnnnnynyntntttnnnsikhsn

Frame C:
lleasrfdhv*ylf*ka*slsaitr*caysikliflrgeviclvlasfdlyafalyctts
eiyesaphkikkk---

---RSXGRVIGDKKNAEHDEAFEMMYLNSLPKTRRTTKKMDLLQKKHLQDAGLVDTDLHA
SSADEKSSTPNKIIKTPPPKRAPGRVKSMLSPSQDTAMSNIGSDSELTSKSNDEQETVKS
PSRNSRITPKRNSNTGSSTPTTTTTTTTQTPQPTTTALNTPT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB551 (CHB551Q) /CSM/CH/CHB5-C/CHB551Q.Seq.d/                        797   0.0
SLB353 (SLB353Q) /CSM/SL/SLB3-C/SLB353Q.Seq.d/                        775   0.0
CHB651 (CHB651Q) /CSM/CH/CHB6-C/CHB651Q.Seq.d/                        414   e-115
SSB731 (SSB731Q) /CSM/SS/SSB7-B/SSB731Q.Seq.d/                         40   0.045
SSB168 (SSB168Q) /CSM/SS/SSB1-C/SSB168Q.Seq.d/                         40   0.045
SLG841 (SLG841Q) /CSM/SL/SLG8-B/SLG841Q.Seq.d/                         40   0.045
SSD635 (SSD635Q) /CSM/SS/SSD6-B/SSD635Q.Seq.d/                         38   0.18
VSH174 (VSH174Q) /CSM/VS/VSH1-D/VSH174Q.Seq.d/                         36   0.70
VFM455 (VFM455Q) /CSM/VF/VFM4-C/VFM455Q.Seq.d/                         36   0.70
SFC506 (SFC506Q) /CSM/SF/SFC5-A/SFC506Q.Seq.d/                         36   0.70
own update 2004. 8.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ699380|AJ699380.1 Dictyostelium discoideum u2 snRNA, clone ddR-19.   408   e-110  1
AC115581|AC115581.3 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    52   3e-09  10
BZ387550|BZ387550.1 EINCN20TF EI_10_12_KB Entamoeba invadens genomic clone EINCN20, DNA sequence.    64   3e-06  1
AZ668388|AZ668388.1 ENTMT49TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   5e-05  1
AZ679350|AZ679350.1 ENTMC32TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   5e-05  1
BH156468|BH156468.1 ENTRM59TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52   0.012  1
AZ533598|AZ533598.1 ENTCV66TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.038  2
Z50072|Z50072.1 V.necatrix DNA for U2 snRNA gene.                  50   0.049  1
AX458567|AX458567.1 Sequence 113 from Patent WO0246454.            36   0.059  4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.091  11
dna update 2004. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK159918_1(AK159918|pid:none) Mus musculus osteoclast-like cell ...    33   6.3
BC028139_1(BC028139|pid:none) Homo sapiens ATPase, Ca++ transpor...    33   6.3
AF181120_1(AF181120|pid:none) Homo sapiens chromosome 3 ATP-depe...    33   6.3
(Q64566) RecName: Full=Calcium-transporting ATPase type 2C membe...    33   6.3
AK296470_1(AK296470|pid:none) Homo sapiens cDNA FLJ56454 complet...    33   6.3
AK074692_1(AK074692|pid:none) Homo sapiens cDNA FLJ90211 fis, cl...    33   6.3
(P57709) RecName: Full=Calcium-transporting ATPase type 2C membe...    33   6.3
(P98194) RecName: Full=Calcium-transporting ATPase type 2C membe...    33   6.3
AY268374_1(AY268374|pid:none) Homo sapiens secretory pathway Ca2...    33   6.3
AF189723_1(AF189723|pid:none) Homo sapiens calcium transport ATP...    33   6.3
protein update 2009. 3.29
PSORT 

 psg: 0.96  gvh: 0.54  alm: 0.36  top: 0.47  tms: 0.00  mit: 0.47  mip: 0.04
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CHB551 is mit
5' end seq. ID CHB551F
5' end seq. 
>CHB551F.Seq
ACCTTCTTGAAGCGTCTCGCTTTGATCATGTGTAGTATCTGTTCTAGAAAGCTTAATCTC
TTTCTGCCATCACACGTTGATGTGCATATTCGATTAAACTTATTTTTCTTCGAGGTGAGG
TCATATGTTTGGTGCTTGCATCATTCGACCTCTACGCATTCGCTCTGTATTGCACAACTT
CAGAGATTTACGAGAGTGCGCCTCACAAAATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 232
3' end seq. ID CHB551Z
3' end seq. 
>CHB551Z.Seq
NNNNNNNNNNCAAGATCAANTGGTAGAGTTATTGGTGATAAAAAGAATGCAGAACATGAT
GAAGCATTTGAAATGATGTATTTAAATAGTTTACCAAAAACAAGAAGAACCACTAAAAAG
ATGGATTTACTCCAAAAGAAACATTTACAAGATGCAGGTTTAGTTGATACTGATTTACAT
GCCTCATCTGCTGATGAAAAATCCTCAACACCAAATAAAATAATTAAAACACCTCCACCA
AAAAGAGCACCAGGTAGAGTTAAATCAATGTTATCACCTTCTCAAGATACAGCAATGTCA
AATATAGGTTCAGATAGTGAATTAACTTCAAAATCAAATGATGAACAAGAAACTGTTAAA
AGTCCTTCAAGAAATTCTAGAATAACTCCAAAAAGAAACAGTAATACAGGTTCATCAACT
CCAACAACAACAACTACAACTACAACACAAACACCACAACCAACAACAACAGCATTAAAC
ACTCCAACT
Length of 3' end seq. 489
Connected seq. ID CHB551P
Connected seq. 
>CHB551P.Seq
ACCTTCTTGAAGCGTCTCGCTTTGATCATGTGTAGTATCTGTTCTAGAAAGCTTAATCTC
TTTCTGCCATCACACGTTGATGTGCATATTCGATTAAACTTATTTTTCTTCGAGGTGAGG
TCATATGTTTGGTGCTTGCATCATTCGACCTCTACGCATTCGCTCTGTATTGCACAACTT
CAGAGATTTACGAGAGTGCGCCTCACAAAATTAAAAAAAAAA----------CAAGATCA
ANTGGTAGAGTTATTGGTGATAAAAAGAATGCAGAACATGATGAAGCATTTGAAATGATG
TATTTAAATAGTTTACCAAAAACAAGAAGAACCACTAAAAAGATGGATTTACTCCAAAAG
AAACATTTACAAGATGCAGGTTTAGTTGATACTGATTTACATGCCTCATCTGCTGATGAA
AAATCCTCAACACCAAATAAAATAATTAAAACACCTCCACCAAAAAGAGCACCAGGTAGA
GTTAAATCAATGTTATCACCTTCTCAAGATACAGCAATGTCAAATATAGGTTCAGATAGT
GAATTAACTTCAAAATCAAATGATGAACAAGAAACTGTTAAAAGTCCTTCAAGAAATTCT
AGAATAACTCCAAAAAGAAACAGTAATACAGGTTCATCAACTCCAACAACAACAACTACA
ACTACAACACAAACACCACAACCAACAACAACAGCATTAAACACTCCAACT
Length of connected seq. 701
Full length Seq ID -
Full length Seq. -
Length of full length seq. -