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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHB889
Library CH
(Link to library)
Clone ID CHB889
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHB889 (CHB889Q) /CSM/CH/CHB8-D/CHB889Q.Seq.d/
ATTTTAAGACCGACTTCTTCAGACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGAT
GACCAACTCATGAAAAATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGAC
AATATGGAGCTCCCAAAGGATCTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCCA
TCAGCCATCCAACAAAGAGCTATCATTCCACTCTCAAAAGGTTTTGATATTATTGCCCAA
GCTCAATCTGGTACTGGTAAAACTGCTACCTTCACCGTTGGTATCTTATCTAGAATTGAT
ATTTCAGTCCTCAAATGTCAAGCTCTCATCATTGCCCCAACTCGTGAACTTGCTCAACAA
ATTCAAAAGGTTGTTTTAGCTTTAGGTGAATATTTACACATTAAATCATACGCATGTATT
GGTGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ilrptssdksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKP
SAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRIDISVLKCQALIIAPTRELAQQ
IQKVVLALGEYLHIKSYACIG---
Translated Amino Acid sequence (All Frames) 
Frame A:
ilrptssdksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKP
SAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRIDISVLKCQALIIAPTRELAQQ
IQKVVLALGEYLHIKSYACIG---


Frame B:
f*drllqtkvnktcpqvikmtns*kmsskvpttklsihstiwssqris*evstpmvlksh
qpsnkelsfhsqkvlillpklnlvlvkllpsplvsylelifqssnvklsslpqlvnllnk
fkrlf*l*vniytlnhthvl---


Frame C:
fktdffrqk*ikhvrk**r*pthek*vrkylrqncrfirqygapkgslkrylllwf*kai
shptksyhstlkrf*yycpssiwyw*ncylhrwyli*n*yfspqmssshhcpns*tcstn
skgcfsfr*ifth*iirmyw---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHB889 (CHB889Q) /CSM/CH/CHB8-D/CHB889Q.Seq.d/                        841   0.0
AFB611 (AFB611Q) /CSM/AF/AFB6-A/AFB611Q.Seq.d/                        841   0.0
VFK524 (VFK524Q) /CSM/VF/VFK5-A/VFK524Q.Seq.d/                        837   0.0
SFG686 (SFG686Q) /CSM/SF/SFG6-D/SFG686Q.Seq.d/                        833   0.0
VFM521 (VFM521Q) /CSM/VF/VFM5-A/VFM521Q.Seq.d/                        831   0.0
VFL244 (VFL244Q) /CSM/VF/VFL2-B/VFL244Q.Seq.d/                        831   0.0
VFF484 (VFF484Q) /CSM/VF/VFF4-D/VFF484Q.Seq.d/                        831   0.0
VFD768 (VFD768Q) /CSM/VF/VFD7-C/VFD768Q.Seq.d/                        831   0.0
SFK631 (SFK631Q) /CSM/SF/SFK6-B/SFK631Q.Seq.d/                        831   0.0
SFK579 (SFK579Q) /CSM/SF/SFK5-D/SFK579Q.Seq.d/                        831   0.0
own update 2002.11.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds.   765   0.0    1
CB367287|CB367287.1 E830 early-oocyst library Plasmodium berghei/Anopheles stephensi mixed EST library cDNA clone E830 similar to Plasmodium berghei RNA helicase-1, mRNA sequence.    82   1e-24  2
AL132828|AL132828.1 S.pombe chromosome I cosmid c1006.             66   5e-21  2
L40627|L40627.1 Schizosaccharomyces pombe cell cycle control protein eIF-4A (tif1) mRNA, complete cds.    66   5e-21  2
X80796|X80796.1 S.pombe eIF-4A mRNA for translation initiation factor.    66   5e-21  2
AU011946|AU011946.1 Schizosaccharomyces pombe cDNA, clone spc06139.    66   5e-21  2
AU009453|AU009453.1 Schizosaccharomyces pombe cDNA, clone spc04934.    66   5e-21  2
AU011976|AU011976.1 Schizosaccharomyces pombe cDNA, clone spc06170.    66   5e-21  2
AU011975|AU011975.1 Schizosaccharomyces pombe cDNA, clone spc06169.    66   5e-21  2
AU006674|AU006674.1 Schizosaccharomyces pombe cDNA, clone spc00270.    66   5e-21  2
dna update 2004. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...   250   9e-66
(A4QVP2) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   168   6e-41
CU633901_170(CU633901|pid:none) Podospora anserina genomic DNA c...   168   6e-41
(A7EGL7) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   168   6e-41
(A6RJ45) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   168   6e-41
(A1D7N3) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   167   8e-41
(Q7RV88) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   166   2e-40
(Q9CAI7) RecName: Full=Eukaryotic initiation factor 4A-3;       ...   166   2e-40
(Q4P331) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   165   5e-40
(Q4WX43) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   165   5e-40
protein update 2009. 3.29
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHB889 is cyt
5' end seq. ID CHB889F
5' end seq. 
>CHB889F.Seq
ATTTTAAGACCGACTTCTTCAGACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGAT
GACCAACTCATGAAAAATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGAC
AATATGGAGCTCCCAAAGGATCTCTTAAGAGGTATCTACTCCTATGGTTTTGAAAAGCCA
TCAGCCATCCAACAAAGAGCTATCATTCCACTCTCAAAAGGTTTTGATATTATTGCCCAA
GCTCAATCTGGTACTGGTAAAACTGCTACCTTCACCGTTGGTATCTTATCTAGAATTGAT
ATTTCAGTCCTCAAATGTCAAGCTCTCATCATTGCCCCAACTCGTGAACTTGCTCAACAA
ATTCAAAAGGTTGTTTTAGCTTTAGGTGAATATTTACACATTAAATCATACGCATGTATT
GGTGNNNNNNNNNN
Length of 5' end seq. 434
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -