CHD624 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHD624
Library	CH (Link to library)
Clone ID	CHD624 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U14975-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHD6-A/CHD624Q.Seq.d/
Representative seq. ID	CHD624P (Link to Original site)
Representative DNA sequence	>CHD624 (CHD624Q) /CSM/CH/CHD6-A/CHD624Q.Seq.d/ GAGAAAGATGAAAAAGATCGTCAAGAGAGATTACAAATTAAAGAACGTTTAGAACGTGAA CGTAAAGAAAGACTTGAAAAAGAGAGATTGGAATATGAAAGATTAGAAACGCTACGTAAA GAAAAGGAAAAAGAACGTAAAGAGAAATTTGAAACTGCTCGTTTAGAACGTGAAAAATTA GAATTGGAATTAAAAGAAAAAGATGAAAAGAAACGTGAAGAGAAAAGATTGGCCAAAATT ATTGAAGAGAATAGAAAGAAAGAAAAAGCATTGGTTGATAAAAAATTAGAAGAACAAGAA AGACTCTCTCACGAATTAAAAATTCAAAAAGAAAAAGAAATATTGAAAATGGAAAAACTT GATCTTCAATGTGAAAAGAAAAAATTAGATAAAGAAAAGAAAGAATTACAAATTGAAAAA GAATTATCTCAAAAACAATTACAATTTATAGAACTAAAACAACAAGAAATTAATCAACAA CAACAAGAAATTAATCATCAACAACAACAACAACAACAAACTCAACANCAAATTCCTCTT CTTACTAAACAACCAACAGTTGAGGAGATTGAATATGAAAGAGTTCAAGAAGAXXXXXXX XXXGAAGAAAAGGAAAGACTAAAAAGNCAAGAGGAAAGCCAAAAGAGAAAAGACCAAAGA GATAAAGAATTAAAAGAAGAAGAACTTCGTATTGAAGCAGAAAGAGAAACTAGAAAAAAA TTAAAAGAAGAACGTGAATTACAATTTAAAAAAGAACAAGTACAACTTTTATTAGAAAGA GATAAAAGAGTAAAAGAGAAACAATTAAAGGATCAAAAATATACATATAAAATTAATGAT ACTGAACTTGAACATATTGTTGAAGATAAAGATTTAACTAAAGAATTTGAAGATAAATTA AGAGAACATCAATTAAAGAAATCTACTTCTTTTGAAAATAATACACTTTCTGTAAATTTA CATGTTGTTGACCCTGATGAAGATGAAAATAATATTTTACAATTAAAGAAACTAAGAGAA TTGGAAATTCAAAGAGAAATTGAATTAGAGAATCAACAACAACAACAATCAAATTGTATT CTTTTAAATAATTATTCAGATTCACCAAGAATATCATCAACATCATCAAATTCTACAAAT TCAAATCAAAATTCACCATTATTAGCTGCTAATACAAATAGTAATAATAGTAGTACATCA ACTAGTTTCTCAGTTTCATCATTTTCTCCACCATTATTTGAACAAACAATGACAACTAAA TCATACAATTAGTAG
sequence update	2002.10.25
Translated Amino Acid sequence	EKDEKDRQERLQIKERLERERKERLEKERLEYERLETLRKEKEKERKEKFETARLEREKL ELELKEKDEKKREEKRLAKIIEENRKKEKALVDKKLEEQERLSHELKIQKEKEILKMEKL DLQCEKKKLDKEKKELQIEKELSQKQLQFIELKQQEINQQQQEINHQQQQQQQTQXQIPL LTKQPTVEEIEYERVQE--- ---EEKERLKXQEESQKRKDQRDKELKEEELRIEAERETRKKLKEERELQFKKEQVQLLL ERDKRVKEKQLKDQKYTYKINDTELEHIVEDKDLTKEFEDKLREHQLKKSTSFENNTLSV NLHVVDPDEDENNILQLKKLRELEIQREIELENQQQQQSNCILLNNYSDSPRISSTSSNS TNSNQNSPLLAANTNSNNSSTSTSFSVSSFSPPLFEQTMTTKSYN**
Translated Amino Acid sequence (All Frames)	Frame A: EKDEKDRQERLQIKERLERERKERLEKERLEYERLETLRKEKEKERKEKFETARLEREKL ELELKEKDEKKREEKRLAKIIEENRKKEKALVDKKLEEQERLSHELKIQKEKEILKMEKL DLQCEKKKLDKEKKELQIEKELSQKQLQFIELKQQEINQQQQEINHQQQQQQQTQXQIPL LTKQPTVEEIEYERVQE--- ---EEKERLKXQEESQKRKDQRDKELKEEELRIEAERETRKKLKEERELQFKKEQVQLLL ERDKRVKEKQLKDQKYTYKINDTELEHIVEDKDLTKEFEDKLREHQLKKSTSFENNTLSV NLHVVDPDEDENNILQLKKLRELEIQREIELENQQQQQSNCILLNNYSDSPRISSTSSNS TNSNQNSPLLAANTNSNNSSTSTSFSVSSFSPPLFEQTMTTKSYN** Frame B: rkmkkivkrdyklknvnvnvkkdlkkrdwnmkdkryvkkrkknvkrnlkllvnvkn nwnkkkmkrnvkrkdwpkllkrierkkkhwliknknkkdsltnkfkkkkkykwknl ifnvkrknikkrknyklkknylknnynlnnnkklinnnkkliinnnnnnklnxkflf llnnqqlrrlnmkefkk--- ---kkrkdkxkrkakrektkeiknkkknfvlkqkekleknkknvnynlkknkynfy* keikekrnnriknihiklmilnlnillkikilknlkineninrnllllkiihfl iymlltlmkmkiifynrnenwkfkeklnrinnnnnqivffiiiqihqeyhqhhqil qiqikihhylliqiviivvhqlvsqfhhflhhylnkqqlnhtis Frame C: erkrssreitnrtfrttrktkreigikirnatrkgkrtreincsfrtkir igikrkrketrekigqnyrekerksig*kirrtrktlsriknskrkrniengkt ssmkekirrkeritnkriisktitiyrtkttrnstttrnssttttttnstxnsss yttnsgdikssrr--- ---rkgktkkxrgkpkekrpkrrikrrrtsysrkrnkkikrrtitikrtsttfir krkskretikgskiyin*yttycrrfnririkrtsikeiyffkytfck ftccprkyftiketkrignskrniresttttiklysfklfrftkniiniikfy kfkskftiiscyk****yinflsfiifstiitnndniiqlv
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHD624 (CHD624Q) /CSM/CH/CHD6-A/CHD624Q.Seq.d/ 1132 0.0 AHQ190 (AHQ190Q) /CSM/AH/AHQ1-D/AHQ190Q.Seq.d/ 1116 0.0 AFE438 (AFE438Q) /CSM/AF/AFE4-B/AFE438Q.Seq.d/ 1116 0.0 CHL892 (CHL892Q) /CSM/CH/CHL8-D/CHL892Q.Seq.d/ 1086 0.0 AFI339 (AFI339Q) /CSM/AF/AFI3-B/AFI339Q.Seq.d/ 1011 0.0 CHF750 (CHF750Q) /CSM/CH/CHF7-C/CHF750Q.Seq.d/ 985 0.0 CHB333 (CHB333Q) /CSM/CH/CHB3-B/CHB333Q.Seq.d/ 658 0.0 CHF454 (CHF454Q) /CSM/CH/CHF4-C/CHF454Q.Seq.d/ 155 2e-36 VFG131 (VFG131Q) /CSM/VF/VFG1-B/VFG131Q.Seq.d/ 52 2e-05 SHI482 (SHI482Q) /CSM/SH/SHI4-D/SHI482Q.Seq.d/ 50 8e-05
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 40 8e-12 16 AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 38 2e-11 30 AE014832\|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 4e-11 19 AE014818\|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 38 8e-11 17 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 40 1e-10 11 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 38 2e-10 18 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 42 2e-10 16 BD061520\|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 40 5e-10 22 AR409405\|AR409405.1 Sequence 1 from patent US 6632935. 40 5e-10 22 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 36 6e-10 18
dna update	2004. 9.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000947_875(CP000947\|pid:none) Haemophilus somnus 2336, complet... 37 1.9 AL031745_77(AL031745\|pid:none) Plasmodium falciparum DNA from MA... 37 1.9 AK299075_1(AK299075\|pid:none) Homo sapiens cDNA FLJ58147 complet... 35 5.4 AE015929_722(AE015929\|pid:none) Staphylococcus epidermidis ATCC ... 35 7.1 CP000361_1784(CP000361\|pid:none) Arcobacter butzleri RM4018, com... 34 9.2
protein update	2008.10.25
PSORT	psg: 0.75 gvh: -0.03 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.06 mip: 0.00 nuc: 0.25 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 68.0 %: nuclear 16.0 %: cytoplasmic 8.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: Golgi >> prediction for CHD624 is nuc
5' end seq. ID	CHD624F
5' end seq.	>CHD624F.Seq GAGAAAGATGAAAAAGATCGTCAAGAGAGATTACAAATTAAAGAACGTTTAGAACGTGAA CGTAAAGAAAGACTTGAAAAAGAGAGATTGGAATATGAAAGATTAGAAACGCTACGTAAA GAAAAGGAAAAAGAACGTAAAGAGAAATTTGAAACTGCTCGTTTAGAACGTGAAAAATTA GAATTGGAATTAAAAGAAAAAGATGAAAAGAAACGTGAAGAGAAAAGATTGGCCAAAATT ATTGAAGAGAATAGAAAGAAAGAAAAAGCATTGGTTGATAAAAAATTAGAAGAACAAGAA AGACTCTCTCACGAATTAAAAATTCAAAAAGAAAAAGAAATATTGAAAATGGAAAAACTT GATCTTCAATGTGAAAAGAAAAAATTAGATAAAGAAAAGAAAGAATTACAAATTGAAAAA GAATTATCTCAAAAACAATTACAATTTATAGAACTAAAACAACAAGAAATTAATCAACAA CAACAAGAAATTAATCATCAACAACAACAACAACAACAAACTCAACANCAAATTCCTCTT CTTACTAAACAACCAACAGTTGAGGAGATTGAATATGAAAGAGTTCAAGAAGANNNNNNN NNN
Length of 5' end seq.	603
3' end seq. ID	CHD624Z
3' end seq.	>CHD624Z.Seq NNNNNNNNNNGAAGAAAAGGAAAGACTAAAAAGNCAAGAGGAAAGCCAAAAGAGAAAAGA CCAAAGAGATAAAGAATTAAAAGAAGAAGAACTTCGTATTGAAGCAGAAAGAGAAACTAG AAAAAAATTAAAAGAAGAACGTGAATTACAATTTAAAAAAGAACAAGTACAACTTTTATT AGAAAGAGATAAAAGAGTAAAAGAGAAACAATTAAAGGATCAAAAATATACATATAAAAT TAATGATACTGAACTTGAACATATTGTTGAAGATAAAGATTTAACTAAAGAATTTGAAGA TAAATTAAGAGAACATCAATTAAAGAAATCTACTTCTTTTGAAAATAATACACTTTCTGT AAATTTACATGTTGTTGACCCTGATGAAGATGAAAATAATATTTTACAATTAAAGAAACT AAGAGAATTGGAAATTCAAAGAGAAATTGAATTAGAGAATCAACAACAACAACAATCAAA TTGTATTCTTTTAAATAATTATTCAGATTCACCAAGAATATCATCAACATCATCAAATTC TACAAATTCAAATCAAAATTCACCATTATTAGCTGCTAATACAAATAGTAATAATAGTAG TACATCAACTAGTTTCTCAGTTTCATCATTTTCTCCACCATTATTTGAACAAACAATGAC AACTAAATCATACAATTAGTAG
Length of 3' end seq.	682
Connected seq. ID	CHD624P
Connected seq.	>CHD624P.Seq GAGAAAGATGAAAAAGATCGTCAAGAGAGATTACAAATTAAAGAACGTTTAGAACGTGAA CGTAAAGAAAGACTTGAAAAAGAGAGATTGGAATATGAAAGATTAGAAACGCTACGTAAA GAAAAGGAAAAAGAACGTAAAGAGAAATTTGAAACTGCTCGTTTAGAACGTGAAAAATTA GAATTGGAATTAAAAGAAAAAGATGAAAAGAAACGTGAAGAGAAAAGATTGGCCAAAATT ATTGAAGAGAATAGAAAGAAAGAAAAAGCATTGGTTGATAAAAAATTAGAAGAACAAGAA AGACTCTCTCACGAATTAAAAATTCAAAAAGAAAAAGAAATATTGAAAATGGAAAAACTT GATCTTCAATGTGAAAAGAAAAAATTAGATAAAGAAAAGAAAGAATTACAAATTGAAAAA GAATTATCTCAAAAACAATTACAATTTATAGAACTAAAACAACAAGAAATTAATCAACAA CAACAAGAAATTAATCATCAACAACAACAACAACAACAAACTCAACANCAAATTCCTCTT CTTACTAAACAACCAACAGTTGAGGAGATTGAATATGAAAGAGTTCAAGAAGA------- ---GAAGAAAAGGAAAGACTAAAAAGNCAAGAGGAAAGCCAAAAGAGAAAAGACCAAAGA GATAAAGAATTAAAAGAAGAAGAACTTCGTATTGAAGCAGAAAGAGAAACTAGAAAAAAA TTAAAAGAAGAACGTGAATTACAATTTAAAAAAGAACAAGTACAACTTTTATTAGAAAGA GATAAAAGAGTAAAAGAGAAACAATTAAAGGATCAAAAATATACATATAAAATTAATGAT ACTGAACTTGAACATATTGTTGAAGATAAAGATTTAACTAAAGAATTTGAAGATAAATTA AGAGAACATCAATTAAAGAAATCTACTTCTTTTGAAAATAATACACTTTCTGTAAATTTA CATGTTGTTGACCCTGATGAAGATGAAAATAATATTTTACAATTAAAGAAACTAAGAGAA TTGGAAATTCAAAGAGAAATTGAATTAGAGAATCAACAACAACAACAATCAAATTGTATT CTTTTAAATAATTATTCAGATTCACCAAGAATATCATCAACATCATCAAATTCTACAAAT TCAAATCAAAATTCACCATTATTAGCTGCTAATACAAATAGTAATAATAGTAGTACATCA ACTAGTTTCTCAGTTTCATCATTTTCTCCACCATTATTTGAACAAACAATGACAACTAAA TCATACAATTAGTAG
Length of connected seq.	1265
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas