NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHD632
Library CH
(Link to library)
Clone ID CHD632
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHD632P
(Link to Original site)
Representative DNA sequence 
>CHD632 (CHD632Q) /CSM/CH/CHD6-B/CHD632Q.Seq.d/
ATTTTAATATATTCACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTA
CAATTTGTCGACGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACC
TCAACTGATTGGGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTT
GGAAGTGGTTCAGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGA
TTTGCATTGGTTAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTC
ATCAATTTCATTGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATT
GGTGGTGTTAAAGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAAT
GAAATCTCTGATGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAA
GTTTTAGATGAAAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAAC
TCTTTCAGAAAATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCA
ATTAAATTAGGTGATGAACCAGCAATTCGTGAAGCCTTXXXXXXXXXXCTTATATTAATT
GGATTGGTGAAGAAATTCCAAGAATGTTAAGAGCACGTTTAGGTACTCATACTGGATTTG
TAAATCAGTTAGTTACACCATATCATGTTGATATTAAATGTACAGTTAAATCAGAAATTT
CAAAAGAGATTGTAGAGGAAACCGTTGCAAAAGCATCAGGTAAAGCATCAATGGTATTGA
GTGATGATGCTCAATCACGTGGTAGTGGTGGTCGTATGACCTCAAGTTACAGTTCATCAA
GTGCTTCAACTCAAGGTTCAAACACAACCGGTAAAACATTTGCTGGTGCTGGTAGTAAAT
TTACAACACCATCAGCTGTGCCAAAATCAAGTGGTTCAACACTTGGTTTCGATGATGAAC
AACAAGTTAGAGATACAATCAAAGATGTTAGATCCGATAGTACTGACACTAATTGGTGTT
TAGTTGGTTATAAAAATGATACCACTTTAACTGTCATTGCTAAAGGAAATGGTGGTGTTG
ATGAATTGGTCGGCCATTTGAATTCAAAGATCGTTGCTTATGGCTTAGTTCGTGAAGTTG
AAAGATTCGATCTCTCTGATACCATCAAATTTGCTTTCATCGATTTCGTTGGTGAAGATA
TCAATCGTATGTTTAGAGCTAAACTTGGTACTCATTCTGGTACTGTTAAACAATTATTCC
ATCCATATCATGTTGATTTACATGTCTCCTCTCCTTCTGAATTATCCNCGAAATCGTTAC
TAAAACTATCACTCAAAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
iliyshnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLV
GSGSGGVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTI
GGVKDFLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTN
SFRKSTYGSVSSPSSSNKDSIKLGDEPAIREA---

---YINWIGEEIPRMLRARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASG
KASMVLSDDAQSRGSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGST
LGFDDEQQVRDTIKDVRSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAY
GLVREVERFDLSDTIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSE
LSXKSLLKLSLKI
Translated Amino Acid sequence (All Frames) 
Frame A:
iliyshnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLV
GSGSGGVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTI
GGVKDFLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTN
SFRKSTYGSVSSPSSSNKDSIKLGDEPAIREA---

---liliglvkkfqec*ehv*vlildl*is*lhhimlilnvqlnqkfqkrl*rkplqkhq
vkhqwy*vmmlnhvvvvvv*pqvtvhqvlqlkvqtqpvkhllvlvvnlqhhqlcqnqvvq
hlvsmmnnkleiqskmldpivltligv*lvikmipl*lsllkemvvlmnwsai*iqrsll
ma*fvklkdsislipsnllssislvkisivclelnlvlilvllnnysihimliymsplll
nyprnry*nyhsk

Frame B:
f*yihttlqkdnny**ewfynlstihhvnqqlqi*emiqpqligyyyhlnhqnqkrln*l
evvqvv*qn*lniykmiwldlhwlerliksmivkplnlhssislekklesfkkvkslspl
vvlkiswvhsnvis*spqrmkslmksy*ikfkislvqvqkf*mkmvqklvlqnqplhqpt
lsenqhtvqflhhhpqiktqln*vmnqqfvkp---

---ly*ldw*rnsknvkstfrysywicksvsytisc*y*mys*irnfkrdcrgnrcksir
*singie**csitw*wwsydlklqfikcfnsrfkhnr*nicwcw**iyntiscakikwfn
twfr**tts*rynqrc*ir*y*h*lvfswl*k*yhfnchc*rkwwc**igrpfefkdrcl
wlss*s*kirsl*yhqicfhrfrw*ryqsyv*s*twysfwyc*tiipsisc*ftcllsf*
iixeivtktitqn

Frame C:
fniftqhykktiiinkngfticrrfim*isncrfkk*fnln*lgiiii*itkirkd*isw
kwfrwcsris*tftr*fgwicig*kd**nr***nr*icihqfhwrkswnlskr*nlchhw
wc*rflgfipm*flnhlke*nl**nrik*nsrylwyrfksfr*kwcknwcfkinhftnql
fqkinirfsfftiilk*rln*ir**tsns*sl---

---YINWIGEEIPRMLRARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASG
KASMVLSDDAQSRGSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGST
LGFDDEQQVRDTIKDVRSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAY
GLVREVERFDLSDTIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSE
LSXKSLLKLSLKI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD632 (CHD632Q) /CSM/CH/CHD6-B/CHD632Q.Seq.d/                       2710   0.0
SFF593 (SFF593Q) /CSM/SF/SFF5-D/SFF593Q.Seq.d/                       1485   0.0
CHB476 (CHB476Q) /CSM/CH/CHB4-D/CHB476Q.Seq.d/                       1485   0.0
CFI625 (CFI625Q) /CSM/CF/CFI6-B/CFI625Q.Seq.d/                       1471   0.0
AFO410 (AFO410Q) /CSM/AF/AFO4-A/AFO410Q.Seq.d/                       1471   0.0
VFH846 (VFH846Q) /CSM/VF/VFH8-B/VFH846Q.Seq.d/                       1465   0.0
CFC730 (CFC730Q) /CSM/CF/CFC7-B/CFC730Q.Seq.d/                       1465   0.0
CFJ633 (CFJ633Q) /CSM/CF/CFJ6-B/CFJ633Q.Seq.d/                       1463   0.0
CFC473 (CFC473Q) /CSM/CF/CFC4-D/CFC473Q.Seq.d/                       1457   0.0
VFI640 (VFI640Q) /CSM/VF/VFI6-B/VFI640Q.Seq.d/                       1437   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.  1384   0.0    5
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   0.006  19
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   0.006  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.010  22
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    46   0.013  13
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    38   0.046  10
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    32   0.085  13
CC067446|CC067446.1 CSU-K33r.11J23.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.11J23, DNA sequence.    50   0.099  1
AL353648|AL353648.27 Human DNA sequence from clone RP11-550P23 on chromosome 13.    50   0.099  1
AQ651762|AQ651762.1 Sheared DNA-20H15.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-20H15, genomic survey sequence.    50   0.099  1
dna update 2004. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116922_4(AC116922|pid:none) Dictyostelium discoideum chromosom...   405   e-111
AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof...    64   1e-08
(A6H7G2) RecName: Full=Drebrin-like protein;  &BC146234_1(BC1462...    63   3e-08
(Q6GM14) RecName: Full=Drebrin-like protein B;  &BC074277_1(BC07...    62   4e-08
(Q7ZXQ9) RecName: Full=Drebrin-like protein A;  &BC044296_1(BC04...    62   5e-08
CR457167_1(CR457167|pid:none) Homo sapiens full open reading fra...    62   6e-08
AB170106_1(AB170106|pid:none) Macaca fascicularis brain cDNA clo...    62   6e-08
BC011677_1(BC011677|pid:none) Homo sapiens drebrin-like, mRNA (c...    62   6e-08
(Q9UJU6) RecName: Full=Drebrin-like protein; AltName: Full=Drebr...    62   6e-08
AF218020_1(AF218020|pid:none) Homo sapiens PP5423 mRNA, complete...    62   6e-08
protein update 2009. 3.30
PSORT 

 psg: 0.66  gvh: 0.59  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHD632 is nuc
5' end seq. ID CHD632F
5' end seq. 
>CHD632F.Seq
ATTTTAATATATTCACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTA
CAATTTGTCGACGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACC
TCAACTGATTGGGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTT
GGAAGTGGTTCAGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGA
TTTGCATTGGTTAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTC
ATCAATTTCATTGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATT
GGTGGTGTTAAAGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAAT
GAAATCTCTGATGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAA
GTTTTAGATGAAAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAAC
TCTTTCAGAAAATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCA
ATTAAATTAGGTGATGAACCAGCAATTCGTGAAGCCTTNNNNNNNNNN
Length of 5' end seq. 648
3' end seq. ID CHD632Z
3' end seq. 
>CHD632Z.Seq
NNNNNNNNNNCTTATATTAATTGGATTGGTGAAGAAATTCCAAGAATGTTAAGAGCACGT
TTAGGTACTCATACTGGATTTGTAAATCAGTTAGTTACACCATATCATGTTGATATTAAA
TGTACAGTTAAATCAGAAATTTCAAAAGAGATTGTAGAGGAAACCGTTGCAAAAGCATCA
GGTAAAGCATCAATGGTATTGAGTGATGATGCTCAATCACGTGGTAGTGGTGGTCGTATG
ACCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAAGGTTCAAACACAACCGGTAAAACA
TTTGCTGGTGCTGGTAGTAAATTTACAACACCATCAGCTGTGCCAAAATCAAGTGGTTCA
ACACTTGGTTTCGATGATGAACAACAAGTTAGAGATACAATCAAAGATGTTAGATCCGAT
AGTACTGACACTAATTGGTGTTTAGTTGGTTATAAAAATGATACCACTTTAACTGTCATT
GCTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGCCATTTGAATTCAAAGATCGTTGCT
TATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTCTCTGATACCATCAAATTTGCTTTC
ATCGATTTCGTTGGTGAAGATATCAATCGTATGTTTAGAGCTAAACTTGGTACTCATTCT
GGTACTGTTAAACAATTATTCCATCCATATCATGTTGATTTACATGTCTCCTCTCCTTCT
GAATTATCCNCGAAATCGTTACTAAAACTATCACTCAAAATT
Length of 3' end seq. 762
Connected seq. ID CHD632P
Connected seq. 
>CHD632P.Seq
ATTTTAATATATTCACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTA
CAATTTGTCGACGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACC
TCAACTGATTGGGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTT
GGAAGTGGTTCAGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGA
TTTGCATTGGTTAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTC
ATCAATTTCATTGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATT
GGTGGTGTTAAAGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAAT
GAAATCTCTGATGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAA
GTTTTAGATGAAAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAAC
TCTTTCAGAAAATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCA
ATTAAATTAGGTGATGAACCAGCAATTCGTGAAGCCTT----------CTTATATTAATT
GGATTGGTGAAGAAATTCCAAGAATGTTAAGAGCACGTTTAGGTACTCATACTGGATTTG
TAAATCAGTTAGTTACACCATATCATGTTGATATTAAATGTACAGTTAAATCAGAAATTT
CAAAAGAGATTGTAGAGGAAACCGTTGCAAAAGCATCAGGTAAAGCATCAATGGTATTGA
GTGATGATGCTCAATCACGTGGTAGTGGTGGTCGTATGACCTCAAGTTACAGTTCATCAA
GTGCTTCAACTCAAGGTTCAAACACAACCGGTAAAACATTTGCTGGTGCTGGTAGTAAAT
TTACAACACCATCAGCTGTGCCAAAATCAAGTGGTTCAACACTTGGTTTCGATGATGAAC
AACAAGTTAGAGATACAATCAAAGATGTTAGATCCGATAGTACTGACACTAATTGGTGTT
TAGTTGGTTATAAAAATGATACCACTTTAACTGTCATTGCTAAAGGAAATGGTGGTGTTG
ATGAATTGGTCGGCCATTTGAATTCAAAGATCGTTGCTTATGGCTTAGTTCGTGAAGTTG
AAAGATTCGATCTCTCTGATACCATCAAATTTGCTTTCATCGATTTCGTTGGTGAAGATA
TCAATCGTATGTTTAGAGCTAAACTTGGTACTCATTCTGGTACTGTTAAACAATTATTCC
ATCCATATCATGTTGATTTACATGTCTCCTCTCCTTCTGAATTATCCNCGAAATCGTTAC
TAAAACTATCACTCAAAATT
Length of connected seq. 1390
Full length Seq ID -
Full length Seq. -
Length of full length seq. -