>CHE427 (CHE427Q) /CSM/CH/CHE4-B/CHE427Q.Seq.d/
XXXXXXXXXXTTNNCANCNTCNTCNCNNCCAGTGAGATTGGAATTATTCCNAGGTAATCN
NCTATCANCAAAGCAATNTGCAATGNCNATTATTAGAACTTCAGCTTCNCATTATGANCC
TTCTTTAATTGCTGCTAAAGCTGATCNCGATTTAAGAGAACAAGATAGATTTATTAGACA
AGAACAAGATGAAGCATTTTATCAATCACTTAAAGAGGATCAAGAAAGAGAAAGAATTAG
ATTAGAAAAAGAGGAACTAGAAAGATNAGNGAAAGNAAGAGAAGAAAAAGAAGAACAAGA
TAGNNTAGATTTCCAAAGAGAATTGGAAGAAAGAAAACAAAGAAAACAANNATTATTGAT
TAATGAGCCAAAACAAAACCAACAANCATGGTGTGGATGTCNNTAAATTAGTCATTAGAT
CACATGATGGTTCNAAATTACAAAGAANCC

---XXSSXPVRLELFXGNXLSXKQXAMXIIRTSASHYXPSLIAAKADXDLREQDRFIRQE
QDEAFYQSLKEDQERERIRLEKEELERXXKXREEKEEQDXXDFQRELEERKQRKQXLLIN
EPKQNQQXWCGCX*ish*it*wfxitkx

Frame A:
---xxxxxxq*dwnysxvixyxqsnxqxxllelqlximxll*lllklixi*enkidlldk
nkmkhfinhlkrikkekeld*kkrn*kdxxkxekkkknkix*iskenwkkenkenxxy*l
msqnktnxhgvdvxklvirshdgsklqrx


Frame B:
---xxxxxxseigiipr*sxixkaxcnxxy*nfsfxl*xffncc*s*srfkrtr*iy*tr
tr*silsit*rgsrkrkn*irkrgtrkxxexkrrkrrtr*xrfpkrigrkktkktxiid*
*aktkptxmvwmsxn*sldhmmvxnykex


Frame C:
---XXSSXPVRLELFXGNXLSXKQXAMXIIRTSASHYXPSLIAAKADXDLREQDRFIRQE
QDEAFYQSLKEDQERERIRLEKEELERXXKXREEKEEQDXXDFQRELEERKQRKQXLLIN
EPKQNQQXWCGCX*ish*it*wfxitkx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ804 (SSJ804Q) /CSM/SS/SSJ8-A/SSJ804Q.Seq.d/                        329   2e-89
SSC403 (SSC403Q) /CSM/SS/SSC4-A/SSC403Q.Seq.d/                        329   2e-89
SFI152 (SFI152Q) /CSM/SF/SFI1-C/SFI152Q.Seq.d/                        329   2e-89
CHE427 (CHE427Q) /CSM/CH/CHE4-B/CHE427Q.Seq.d/                        329   2e-89
CHC456 (CHC456Q) /CSM/CH/CHC4-C/CHC456Q.Seq.d/                        329   2e-89
CHB684 (CHB684Q) /CSM/CH/CHB6-D/CHB684Q.Seq.d/                        329   2e-89
AFF530 (AFF530Q) /CSM/AF/AFF5-B/AFF530Q.Seq.d/                        329   2e-89
SFD552 (SFD552Q) /CSM/SF/SFD5-C/SFD552Q.Seq.d/                        321   5e-87
VFJ854 (VFJ854Q) /CSM/VF/VFJ8-C/VFJ854Q.Seq.d/                        272   4e-72
VSI481 (VSI481Q) /CSM/VS/VSI4-D/VSI481Q.Seq.d/                        238   6e-62

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC111942|AC111942.4 Rattus norvegicus clone CH230-207C1, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   1.7    1
AC132019|AC132019.3 Rattus norvegicus clone CH230-290I23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   1.7    1
AC121660|AC121660.4 Rattus norvegicus clone CH230-376N10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   1.7    1
AC025540|AC025540.7 Homo sapiens BAC clone RP11-295N22 from 7, complete sequence.    42   2.1    4
AC110448|AC110448.4 Rattus norvegicus clone CH230-325D20, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    38   2.6    2
AC087371|AC087371.3 Homo sapiens chromosome 11 clone RP11-156A14 map 11, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42   5.2    2
CE253730|CE253730.1 tigr-gss-dog-17000336244314 Dog Library Canis familiaris genomic, genomic survey sequence.    42   6.6    1
AC069284|AC069284.9 Homo sapiens chromosome 7 clone RP11-156A14, WORKING DRAFT SEQUENCE, 12 unordered pieces.    42   6.6    1
AC099628|AC099628.2 Mus musculus clone RP24-82L18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42   6.6    1
CB278705|CB278705.1 ru38b06.y1 Heterodera glycines J4 Heterodera glycines cDNA 5' similar to TR:Q9VJ33 Q9VJ33 CG10679 PROTEIN. ;, mRNA sequence.    42   6.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992691_592(FM992691|pid:none) Candida dubliniensis CD36 chromo...    37   0.27
AK122394_1(AK122394|pid:none) Mus musculus mRNA for mKIAA0887 pr...    32   5.1
AK151617_1(AK151617|pid:none) Mus musculus bone marrow macrophag...    32   5.1
BC157333_1(BC157333|pid:none) Xenopus tropicalis expressed in T-...    32   5.1
(Q96CS3) RecName: Full=FAS-associated factor 2; AltName: Full=UB...    32   5.1
DQ892700_1(DQ892700|pid:none) Synthetic construct clone IMAGE:10...    32   5.1
(Q2HJD0) RecName: Full=FAS-associated factor 2; AltName: Full=UB...    32   5.1
(Q3TDN2) RecName: Full=FAS-associated factor 2; AltName: Full=UB...    32   5.1
BC046817_1(BC046817|pid:none) Mus musculus UBX domain containing...    32   5.1
(Q28BP9) RecName: Full=FAS-associated factor 2; AltName: Full=UB...    32   5.1

 psg: 0.82  gvh: 0.45  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHE427 is cyt

>CHE427Z.Seq
NNNNNNNNNNTTNNCANCNTCNTCNCNNCCAGTGAGATTGGAATTATTCCNAGGTAATCN
NCTATCANCAAAGCAATNTGCAATGNCNATTATTAGAACTTCAGCTTCNCATTATGANCC
TTCTTTAATTGCTGCTAAAGCTGATCNCGATTTAAGAGAACAAGATAGATTTATTAGACA
AGAACAAGATGAAGCATTTTATCAATCACTTAAAGAGGATCAAGAAAGAGAAAGAATTAG
ATTAGAAAAAGAGGAACTAGAAAGATNAGNGAAAGNAAGAGAAGAAAAAGAAGAACAAGA
TAGNNTAGATTTCCAAAGAGAATTGGAAGAAAGAAAACAAAGAAAACAANNATTATTGAT
TAATGAGCCAAAACAAAACCAACAANCATGGTGTGGATGTCNNTAAATTAGTCATTAGAT
CACATGATGGTTCNAAATTACAAAGAANCC