CHF613
Library CH
(Link to library)
Clone ID CHF613
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHF613 (CHF613Q) /CSM/CH/CHF6-A/CHF613Q.Seq.d/
XXXXXXXXXXCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAA
AATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATT
GAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGAT
GAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTT
GAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAA
AATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATC
GTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAA
ATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTG
GATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAG
AAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAA
ATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAA
CAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhxfxf*k


Translated Amino Acid sequence (All Frames)
Frame A:
---tcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*
k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr
*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssre
ttis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sxlxflk


Frame B:
---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhxfxf*k


Frame C:
---ll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mk
mnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnksl
nnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrn
nnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliixxlfkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 660 0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/ 660 0.0
SHL728 (SHL728Q) /CSM/SH/SHL7-B/SHL728Q.Seq.d/ 660 0.0
SHL436 (SHL436Q) /CSM/SH/SHL4-B/SHL436Q.Seq.d/ 660 0.0
SHL430 (SHL430Q) /CSM/SH/SHL4-B/SHL430Q.Seq.d/ 660 0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/ 660 0.0
SHL121 (SHL121Q) /CSM/SH/SHL1-A/SHL121Q.Seq.d/ 660 0.0
SHJ743 (SHJ743Q) /CSM/SH/SHJ7-B/SHJ743Q.Seq.d/ 660 0.0
SHJ523 (SHJ523Q) /CSM/SH/SHJ5-A/SHJ523Q.Seq.d/ 660 0.0
SHH208 (SHH208Q) /CSM/SH/SHH2-A/SHH208Q.Seq.d/ 660 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 579 0.0 3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 2e-30 15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 8e-11 19
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome. 36 3e-10 26
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 5e-10 17
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 2e-08 14
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 36 7e-08 22
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 38 8e-08 18
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 8e-08 18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 2e-07 19
dna update 2005. 7.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 233 3e-60
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 1.6
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 35 2.8
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 33 6.3
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I... 33 8.2
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 33 8.2
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote... 33 8.2

protein update 2009. 1. 1
PSORT

psg: 0.81 gvh: 0.16 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for CHF613 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHF613Z
3' end seq.
>CHF613Z.Seq
NNNNNNNNNNCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAA
AATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATT
GAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGAT
GAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTT
GAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAA
AATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATC
GTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAA
ATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTG
GATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAG
AAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAA
ATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAA
CAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAA
Length of 3' end seq. 703
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -