>CHF613 (CHF613Q) /CSM/CH/CHF6-A/CHF613Q.Seq.d/
XXXXXXXXXXCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAA
AATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATT
GAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGAT
GAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTT
GAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAA
AATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATC
GTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAA
ATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTG
GATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAG
AAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAA
ATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAA
CAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAA

---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhxfxf*k

Frame A:
---tcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*
k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr
*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssre
ttis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sxlxflk


Frame B:
---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhxfxf*k


Frame C:
---ll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mk
mnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnksl
nnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrn
nnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliixxlfkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        660   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        660   0.0
SHL728 (SHL728Q) /CSM/SH/SHL7-B/SHL728Q.Seq.d/                        660   0.0
SHL436 (SHL436Q) /CSM/SH/SHL4-B/SHL436Q.Seq.d/                        660   0.0
SHL430 (SHL430Q) /CSM/SH/SHL4-B/SHL430Q.Seq.d/                        660   0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/                        660   0.0
SHL121 (SHL121Q) /CSM/SH/SHL1-A/SHL121Q.Seq.d/                        660   0.0
SHJ743 (SHJ743Q) /CSM/SH/SHJ7-B/SHJ743Q.Seq.d/                        660   0.0
SHJ523 (SHJ523Q) /CSM/SH/SHJ5-A/SHJ523Q.Seq.d/                        660   0.0
SHH208 (SHH208Q) /CSM/SH/SHH2-A/SHH208Q.Seq.d/                        660   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   579   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   2e-30  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   8e-11  19
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome.    36   3e-10  26
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   5e-10  17
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   2e-08  14
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    36   7e-08  22
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   8e-08  18
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    38   8e-08  18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-07  19

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   233   3e-60
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.6
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   2.8
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   6.3
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   8.2
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   8.2
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   8.2

 psg: 0.81  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHF613 is nuc

>CHF613Z.Seq
NNNNNNNNNNCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAA
AATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATT
GAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGAT
GAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTT
GAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAA
AATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATC
GTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAA
ATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTG
GATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAG
AAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAA
ATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAA
CAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAA