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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHF804
Library CH
(Link to library)
Clone ID CHF804
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11726-1
Original site URL
Representative seq. ID CHF804P
(Link to Original site)
Representative DNA sequence 
>CHF804 (CHF804Q) /CSM/CH/CHF8-A/CHF804Q.Seq.d/
GTCCACACAGCAAATAAAAATTTATTTATTATTATTTTATTTATTATTATTAATAATTAT
TATTATTATTAATATAAATATATATAAATACAAAAAAAAAAXXXXXXXXXXGGATGGTGG
TGAAGATGAATTCCCATCNGCTTTTATCTTATTAATATTATTNGTTTTTGCANGNGNTNT
TGGTATTTCAAGTAAANTGGGATGGAATATGNGGATACAAATTGCACTCGGAGNTNGTCA
AGCTGTTATTATTGGTTTAGTTTGGTTGAAAAAACAAATTAATATTCCNACTTCTTTCAG
ATGTCCATTCAATCCAATTTTACCATGCCTNGGCATTGTTGTAAATACATTNTTTATTAT
GCATTTGGATACACCATCATNTTACANAGTTGCTGCTTGGACCGCTTTAGGTAGTTCAAT
NTNTTTTATANATGGTATTAGANACAGTAANNTTAACCAATTAGATANTGTTGAAGANTN
TATCAATCATTAATACAANTNTTTATTTTCTTTTTTTTTTCTTTTCCTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
STQQIKIYLLLFYLLLLIIIIIININIYKYKKK---

---DGGEDEFPSAFILLILXVFAXXXGISSKXGWNMXIQIALGXXQAVIIGLVWLKKQIN
IPTSFRCPFNPILPCLGIVVNTXFIMHLDTPSXYXVAAWTALGSSXXFIXGIRXSXXNQL
DXVEXXINH*yxxlfsffflfl
Translated Amino Acid sequence (All Frames) 
Frame A:
vhtanknlfiiilfiiinnyyyy*ykyi*iqkk---

---gww*r*ipixfyliniixfcxxxwyfk*xgmeyxdtnctrxxsscyywfslvektn*
ysxffqmsiqsnftmpxhcckyixyyafgytixlxsccldrfr*fnxfyxwy*xq*x*pi
rxc*rxyqsliqxfiffffsfp

Frame B:
STQQIKIYLLLFYLLLLIIIIIININIYKYKKK---

---DGGEDEFPSAFILLILXVFAXXXGISSKXGWNMXIQIALGXXQAVIIGLVWLKKQIN
IPTSFRCPFNPILPCLGIVVNTXFIMHLDTPSXYXVAAWTALGSSXXFIXGIRXSXXNQL
DXVEXXINH*yxxlfsffflfl

Frame C:
phsk*kfiyyyfiyyy**llllli*iyintkkk---

---mvvkmnshxllsy*yyxflxxxlvfqvxwdgixgyklhsexvkllllv*fg*knkli
fxllsdvhsiqfyhaxall*ihxllciwihhhxtxlllgpl*vvqxxlxmvlxtvxltn*
ixlkxxsiintxxyflffffs*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF804 (CHF804Q) /CSM/CH/CHF8-A/CHF804Q.Seq.d/                        626   e-179
AFH640 (AFH640Q) /CSM/AF/AFH6-B/AFH640Q.Seq.d/                        611   e-174
VFE319 (VFE319Q) /CSM/VF/VFE3-A/VFE319Q.Seq.d/                         36   0.52
SLE544 (SLE544Q) /CSM/SL/SLE5-B/SLE544Q.Seq.d/                         36   0.52
AFN170 (AFN170Q) /CSM/AF/AFN1-C/AFN170Q.Seq.d/                         36   0.52
AFJ729 (AFJ729Q) /CSM/AF/AFJ7-B/AFJ729Q.Seq.d/                         36   0.52
VHP393 (VHP393Q) /CSM/VH/VHP3-D/VHP393Q.Seq.d/                         34   2.1
VHN521 (VHN521Q) /CSM/VH/VHN5-A/VHN521Q.Seq.d/                         34   2.1
VHM317 (VHM317Q) /CSM/VH/VHM3-A/VHM317Q.Seq.d/                         34   2.1
VHJ466 (VHJ466Q) /CSM/VH/VHJ4-C/VHJ466Q.Seq.d/                         34   2.1
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.86   7
AJ414696|AJ414696.1 Sulfolobus virus SIRV-1 complete viral genome.    34   3.0    4
AZ538082|AZ538082.1 ENTEL14TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   4.2    2
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    34   4.2    8
AC150310|AC150310.1 Latimeria menadoensis clone VMRC4-40C18, complete sequence.    38   4.9    4
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   5.9    6
AL157401|AL157401.11 Human DNA sequence from clone RP5-1051H14 on chromosome 10p14-15.1.  Contains a heat shock 90kD protein 1, beta (HSPCB) pseudogene and  GSTs.    38   8.5    4
AC010141|AC010141.2 Homo sapiens BAC clone RP11-220O2 from Y, complete sequence.    42   9.0    1
AC147666|AC147666.4 Pan troglodytes BAC clone CH251-196O7 from Y, complete sequence.    42   9.0    1
AC147334|AC147334.3 Pan troglodytes chromosome Y clone CH251-372D20, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   9.0    1
dna update 2004.10. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015566_1(AF015566|pid:none) Dictyostelium discoideum CtrA (ctr...    95   1e-18
(P30825) RecName: Full=High affinity cationic amino acid transpo...    52   7e-06
S29685(S29685;A40775) retroviral receptor - human  &X57303_1(X57...    52   7e-06
CR859607_1(CR859607|pid:none) Pongo abelii mRNA; cDNA DKFZp459K1...    52   9e-06
BC063720_1(BC063720|pid:none) Xenopus laevis hypothetical protei...    50   3e-05
AE014296_2647(AE014296|pid:none) Drosophila melanogaster chromos...    49   6e-05
(Q09143) RecName: Full=High affinity cationic amino acid transpo...    49   7e-05
AF025452_2(AF025452|pid:none) Caenorhabditis elegans cosmid B045...    49   7e-05
CS237052_1(CS237052|pid:none) Sequence 11 from Patent WO20051162...    49   7e-05
U70476_1(U70476|pid:none) Rattus norvegicus cationic amino acid ...    49   1e-04
protein update 2009. 3.31
PSORT 

 psg: 1.01  gvh: 0.75  alm: 0.32  top: 0.47  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: nuclear

>> prediction for CHF804 is exc
5' end seq. ID CHF804F
5' end seq. 
>CHF804F.Seq
GTCCACACAGCAAATAAAAATTTATTTATTATTATTTTATTTATTATTATTAATAATTAT
TATTATTATTAATATAAATATATATAAATACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 111
3' end seq. ID CHF804Z
3' end seq. 
>CHF804Z.Seq
NNNNNNNNNNGGATGGTGGTGAAGATGAATTCCCATCNGCTTTTATCTTATTAATATTAT
TNGTTTTTGCANGNGNTNTTGGTATTTCAAGTAAANTGGGATGGAATATGNGGATACAAA
TTGCACTCGGAGNTNGTCAAGCTGTTATTATTGGTTTAGTTTGGTTGAAAAAACAAATTA
ATATTCCNACTTCTTTCAGATGTCCATTCAATCCAATTTTACCATGCCTNGGCATTGTTG
TAAATACATTNTTTATTATGCATTTGGATACACCATCATNTTACANAGTTGCTGCTTGGA
CCGCTTTAGGTAGTTCAATNTNTTTTATANATGGTATTAGANACAGTAANNTTAACCAAT
TAGATANTGTTGAAGANTNTATCAATCATTAATACAANTNTTTATTTTCTTTTTTTTTTC
TTTTCCTAA
Length of 3' end seq. 429
Connected seq. ID CHF804P
Connected seq. 
>CHF804P.Seq
GTCCACACAGCAAATAAAAATTTATTTATTATTATTTTATTTATTATTATTAATAATTAT
TATTATTATTAATATAAATATATATAAATACAAAAAAAAAA----------GGATGGTGG
TGAAGATGAATTCCCATCNGCTTTTATCTTATTAATATTATTNGTTTTTGCANGNGNTNT
TGGTATTTCAAGTAAANTGGGATGGAATATGNGGATACAAATTGCACTCGGAGNTNGTCA
AGCTGTTATTATTGGTTTAGTTTGGTTGAAAAAACAAATTAATATTCCNACTTCTTTCAG
ATGTCCATTCAATCCAATTTTACCATGCCTNGGCATTGTTGTAAATACATTNTTTATTAT
GCATTTGGATACACCATCATNTTACANAGTTGCTGCTTGGACCGCTTTAGGTAGTTCAAT
NTNTTTTATANATGGTATTAGANACAGTAANNTTAACCAATTAGATANTGTTGAAGANTN
TATCAATCATTAATACAANTNTTTATTTTCTTTTTTTTTTCTTTTCCTAA
Length of connected seq. 520
Full length Seq ID -
Full length Seq. -
Length of full length seq. -