>CHF843 (CHF843Q) /CSM/CH/CHF8-B/CHF843Q.Seq.d/
XXXXXXXXXXTATGTCAAGATTGGTTTCAACATTATTTAAAGATGGATAAGGAGGTAGGA
TCAGTAGATCATGAAATGGCATTACCATTCTGTTCACCACAATTACACCCACCAGAGAAA
CCATTTGGTATCTTTGAAGGTCCTTACTCTATACGTCGTCGTTGTTTAGGTGATAAACAT
GTTCATGAAACCATTTTTCAATATATCAATCAATTTTGGGAAAACTATAAAGATGTTGGT
AAAATATTACATACAACCTTTATGGATGGTCATGAAGGTACCAATGAAGTTATTCAAATT
GCTGATAAAGGTTTTCAAAAGTTTTTAGATAAGGATTTAAGACCAAAACTAAATGATACC
TTTTTAATTTTAGCCTCTGATCATGGTCAACATATGTCTGGTTATTATATGTGGTCCAAA
GGTGGTAAAATCGAAGTGGCAATGCCAATGCTCTATTTGGTCTTACCAAGTTGGTTCCTT
GAAAAATACCCTCACCTCGAACAACAACTATTGGAAAATGAAAATAAACTATCAACACCT
TTCCAATTGTATGATACCATTAGAACACTTTCAACTTTTCCTGAATTTGGTGGTATCGAT
ATGAAAGATCCAAATGGTGTTCGTAATGATAATCAAAAAGGTTTTTTAGGTAAA

---CQDWFQHYLKMDKEVGSVDHEMALPFCSPQLHPPEKPFGIFEGPYSIRRRCLGDKHV
HETIFQYINQFWENYKDVGKILHTTFMDGHEGTNEVIQIADKGFQKFLDKDLRPKLNDTF
LILASDHGQHMSGYYMWSKGGKIEVAMPMLYLVLPSWFLEKYPHLEQQLLENENKLSTPF
QLYDTIRTLSTFPEFGGIDMKDPNGVRNDNQKGFLGK

Frame A:
---msrlvstlfkdg*ggrisrs*ngitilfttitptretiwyl*rsllytsslfr**tc
s*nhfsiyqsilgkl*rcw*nitynlygws*ryq*sysnc**rfskvfr*gfktktk*yl
fnfsl*swstyvwllyvvqrw*nrsgnanalfgltklvp*kipsprtttigk*k*tintf
piv*yh*ntfnfs*iwwyryerskwcs***skrffr*


Frame B:
---CQDWFQHYLKMDKEVGSVDHEMALPFCSPQLHPPEKPFGIFEGPYSIRRRCLGDKHV
HETIFQYINQFWENYKDVGKILHTTFMDGHEGTNEVIQIADKGFQKFLDKDLRPKLNDTF
LILASDHGQHMSGYYMWSKGGKIEVAMPMLYLVLPSWFLEKYPHLEQQLLENENKLSTPF
QLYDTIRTLSTFPEFGGIDMKDPNGVRNDNQKGFLGK


Frame C:
---vkigfnii*rwirr*dq*imkwhyhsvhhnythqrnhlvslkvltlyvvvv*vinmf
mkpffnisinfgktikmlvkyyiqplwmvmkvpmklfkllikvfksf*iri*dqn*mipf
*f*plimvniclviicgpkvvkskwqcqcsiwsyqvgslkntltsnnnywkmkinyqhls
ncmiplehfqlflnlvvsi*kiqmvfvmiikkvf*v

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF843 (CHF843Q) /CSM/CH/CHF8-B/CHF843Q.Seq.d/                       1277   0.0
CFH745 (CFH745Q) /CSM/CF/CFH7-B/CFH745Q.Seq.d/                       1265   0.0
VSJ305 (VSJ305Q) /CSM/VS/VSJ3-A/VSJ305Q.Seq.d/                       1223   0.0
CHL648 (CHL648Q) /CSM/CH/CHL6-B/CHL648Q.Seq.d/                       1203   0.0
CHP250 (CHP250Q) /CSM/CH/CHP2-C/CHP250Q.Seq.d/                       1191   0.0
CHH467 (CHH467Q) /CSM/CH/CHH4-C/CHH467Q.Seq.d/                       1162   0.0
CHF860 (CHF860Q) /CSM/CH/CHF8-C/CHF860Q.Seq.d/                       1104   0.0
VFG174 (VFG174Q) /CSM/VF/VFG1-D/VFG174Q.Seq.d/                       1094   0.0
CHK874 (CHK874Q) /CSM/CH/CHK8-D/CHK874Q.Seq.d/                       1057   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.  1277   0.0    1
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   5e-04  19
AC097724|AC097724.6 Homo sapiens BAC clone RP11-713D19 from 2, complete sequence.    34   0.36   5
AE017354|AE017354.1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome.    36   0.49   23
AC016920|AC016920.14 Homo sapiens 3 BAC RP11-203L15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36   0.60   7
AE010141|AE010141.1 Pyrococcus furiosus DSM 3638, section 16 of 173 of the complete genome.    34   0.61   4
CD543903|CD543903.1 B0253B05-3 NIA Mouse Embryonic Germ Cell cDNA Library (Long) Mus musculus cDNA clone NIA:B0253B05 IMAGE:30108496 3', mRNA sequence.    46   0.71   1
AC150239|AC150239.2 Sorex araneus clone SA_Ba-527L4, WORKING DRAFT SEQUENCE, 7 ordered pieces.    34   0.82   7
CR762472|CR762472.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.87   5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    30   1.0    12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134_1655(AE014134|pid:none) Drosophila melanogaster chromos...    63   8e-09
AE014134_3298(AE014134|pid:none) Drosophila melanogaster chromos...    57   5e-07
T20997(T20997) hypothetical protein F15H10.7 - Caenorhabditis el...    54   3e-06
AY058755_1(AY058755|pid:none) Drosophila melanogaster SD01790 fu...    52   1e-05
AE014297_2080(AE014297|pid:none) Drosophila melanogaster chromos...    52   1e-05
AY089270_1(AY089270|pid:none) Drosophila melanogaster AT07326 fu...    50   4e-05
AE014134_3658(AE014134|pid:none) Drosophila melanogaster chromos...    50   4e-05
BT022768_1(BT022768|pid:none) Drosophila melanogaster IP13869 fu...    49   1e-04
AE014134_2107(AE014134|pid:none) Drosophila melanogaster chromos...    49   1e-04
AE014297_2986(AE014297|pid:none) Drosophila melanogaster chromos...    49   2e-04

 psg: 0.59  gvh: 0.41  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHF843 is cyt

>CHF843Z.Seq
NNNNNNNNNNTATGTCAAGATTGGTTTCAACATTATTTAAAGATGGATAAGGAGGTAGGA
TCAGTAGATCATGAAATGGCATTACCATTCTGTTCACCACAATTACACCCACCAGAGAAA
CCATTTGGTATCTTTGAAGGTCCTTACTCTATACGTCGTCGTTGTTTAGGTGATAAACAT
GTTCATGAAACCATTTTTCAATATATCAATCAATTTTGGGAAAACTATAAAGATGTTGGT
AAAATATTACATACAACCTTTATGGATGGTCATGAAGGTACCAATGAAGTTATTCAAATT
GCTGATAAAGGTTTTCAAAAGTTTTTAGATAAGGATTTAAGACCAAAACTAAATGATACC
TTTTTAATTTTAGCCTCTGATCATGGTCAACATATGTCTGGTTATTATATGTGGTCCAAA
GGTGGTAAAATCGAAGTGGCAATGCCAATGCTCTATTTGGTCTTACCAAGTTGGTTCCTT
GAAAAATACCCTCACCTCGAACAACAACTATTGGAAAATGAAAATAAACTATCAACACCT
TTCCAATTGTATGATACCATTAGAACACTTTCAACTTTTCCTGAATTTGGTGGTATCGAT
ATGAAAGATCCAAATGGTGTTCGTAATGATAATCAAAAAGGTTTTTTAGGTAAA