NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF793
Library AF
(Link to library)
Clone ID AFF793
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16398-1
Original site URL
Representative seq. ID AFF793P
(Link to Original site)
Representative DNA sequence 
>AFF793 (AFF793Q) /CSM/AF/AFF7-D/AFF793Q.Seq.d/
ACATCTTTTAGATTACAAGTATTGGTGTAATAATAATATAAAAAGTAATAAAAAATAAAA
AAAATGAAGATGATAATCATTTTTTTTATATTGTTAATATTAAATTTAATTAAATCTCAA
CAGTATGGACCAACATGGGACCAAATTAATTCAAGACCATTACCAGGTTGGTATGATGAT
GTAAAGTTTGGAATATTTATTCATTTTGGAATTTATAGTGTACCAGCATTTGCAAATGGA
GGATATGCAGAATGGTATTGGTGGACATTAAAAAATCCAAGTTCTGATGGTGGTGCAACA
CAAAGATATCATGAAAAAGAGTTTGGAGCCAATTTTACATATCAAGATTTCGTTTCAAGA
TTTGATTGTCGTTTATTCGATGCTAATGAATGGGCATCAATAATTGAAAAATCTGGTGCA
AAATATGTAGTTTTAACATCAAAACATCATGAAGGTTATACCCTTTGGAATAGTGAACAA
TCATGGAATTGGAATTCTGTTGAAACTGGTCCTGGTATTGATATCGTTGGTGAGTTAACA
AAATCTGTTAAAAACATGGGTTTACATATGGGTCTTTATCATTCTTTATTTGAATGGTTX
XXXXXXXXXTAAACTTCAATCACATAAATGGGAAAAATTGTGCAACCATTGGATATTCAT
ATGGTTATGATGAATATGAACAGGCTACTGATTATCAAAATGCTACAGAGTTAATAATTG
ATTTGGTAACAACGGTTGCATGTGGTGGTAATTTCTTATTGGATGTAGGCCCAGATGCTC
AAGGTACAATTCCAAATAATATGGTTGACCGTTTATTAGAGATTGGTAATTGGTTATCAA
TTAATTCTGAATCAATTTATGGTAGTTCACCATGGAGAGTTCAAAATATGACTTTTAACA
TCTGGTATACTACAAATACTACCAATGGTAATGTTTATGCATTTGTATTTGAATTACCAG
ATGATGGTGTTTTAATTTTAAGTGATCCAATTGGTAATAATAAAACAGAAGCAACTTTAT
TAGGTTTAAAAGGTGAAAAAGGTGTTGAAGTATCATTACCAATTGAATCAACAAAACCTG
GTATTACACTAAACATTNCCAATGGTTGCACCACAAGATTATCCACCATATGTTTATGTT
TTAGNATTAACTGNAGTGNANAAAAAAAANAAAAAAAAAAAAAA
sequence update 2001. 6. 2
Translated Amino Acid sequence 
tsfrlqvlv***ykk**KIKKMKMIIIFFILLILNLIKSQQYGPTWDQINSRPLPGWYDD
VKFGIFIHFGIYSVPAFANGGYAEWYWWTLKNPSSDGGATQRYHEKEFGANFTYQDFVSR
FDCRLFDANEWASIIEKSGAKYVVLTSKHHEGYTLWNSEQSWNWNSVETGPGIDIVGELT
KSVKNMGLHMGLYHSLFEW---

---NFNHINGKNCATIGYSYGYDEYEQATDYQNATELIIDLVTTVACGGNFLLDVGPDAQ
GTIPNNMVDRLLEIGNWLSINSESIYGSSPWRVQNMTFNIWYTTNTTNGNVYAFVFELPD
DGVLILSDPIGNNKTEATLLGLKGEKGVEVSLPIESTKPGITLNIXNGCTTRLSTICLCF
XINXSXXKKXKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
tsfrlqvlv***ykk**KIKKMKMIIIFFILLILNLIKSQQYGPTWDQINSRPLPGWYDD
VKFGIFIHFGIYSVPAFANGGYAEWYWWTLKNPSSDGGATQRYHEKEFGANFTYQDFVSR
FDCRLFDANEWASIIEKSGAKYVVLTSKHHEGYTLWNSEQSWNWNSVETGPGIDIVGELT
KSVKNMGLHMGLYHSLFEW---

---*tsit*mgkivqpldihmvmmnmnrlliikmlqs**liw*qrlhvvvisywm*aqml
kvqfqiiwltvy*rlvigyqlilnqfmvvhhgefki*lltsgilqilpmvmfmhlylnyq
mmvf*f*viqlviikqkqly*v*kvkkvlkyhyqlnqqnlvlh*txpmvapqdyppyvyv
lxltxvxkkxkkkk

Frame B:
hlldykywcnnniksnkk*kk*r**sfflyc*y*i*lnlnsmdqhgtkliqdhyqvgmmm
*sleylfilefivyqhlqmedmqngiggh*kiqvlmvvqhkdimkkslepilhikisfqd
livvysmlmnghq*lknlvqnm*f*hqnimkvipfgivnnhgigillklvlvlislvs*q
nllktwvyiwvfiilylng---

---klqshkweklcnhwifiwl**i*tgy*lskcyrvnn*fgnngcmww*fligcrprcs
rynsk*yg*pfirdw*lvin*f*inlw*ftmesskydf*hlvyykyyqw*clcici*itr
*wcfnfk*snw***nrsnfirfkr*krc*siitn*inktwyytkhxqwlhhkiihhmfmf
*x*lxxxkkxkkkk

Frame C:
if*itsigviii*kviknkkneddnhffyivnikfn*istvwtnmgpn*fktitrlv**c
kvwniysfwnl*ctsickwricrmvlvdikkskf*wwcntkis*krvwsqfyisrfrfki
*lsfirc**mginn*kiwckicsfnikts*rlyple**timelefc*nwswy*yrw*vnk
ic*khgftygslsffi*mv---

---NFNHINGKNCATIGYSYGYDEYEQATDYQNATELIIDLVTTVACGGNFLLDVGPDAQ
GTIPNNMVDRLLEIGNWLSINSESIYGSSPWRVQNMTFNIWYTTNTTNGNVYAFVFELPD
DGVLILSDPIGNNKTEATLLGLKGEKGVEVSLPIESTKPGITLNIXNGCTTRLSTICLCF
XINXSXXKKXKKKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFF793 (AFF793Q) /CSM/AF/AFF7-D/AFF793Q.Seq.d/                       2046   0.0
AFF880 (AFF880Q) /CSM/AF/AFF8-D/AFF880Q.Seq.d/                       1027   0.0
SLC793 (SLC793Q) /CSM/SL/SLC7-D/SLC793Q.Seq.d/                       1025   0.0
SFE510 (SFE510Q) /CSM/SF/SFE5-A/SFE510Q.Seq.d/                       1025   0.0
SSJ216 (SSJ216Q) /CSM/SS/SSJ2-A/SSJ216Q.Seq.d/                       1017   0.0
SLG555 (SLG555Q) /CSM/SL/SLG5-C/SLG555Q.Seq.d/                       1015   0.0
SFF546 (SFF546Q) /CSM/SF/SFF5-B/SFF546Q.Seq.d/                       1015   0.0
AFO636 (AFO636Q) /CSM/AF/AFO6-B/AFO636Q.Seq.d/                       1015   0.0
AFO249 (AFO249Q) /CSM/AF/AFO2-C/AFO249Q.Seq.d/                       1015   0.0
AFN779 (AFN779Q) /CSM/AF/AFN7-D/AFN779Q.Seq.d/                       1015   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y07497|Y07497.1 Dictyostelium discoideum putative alpha-L-fucosidase gene.   920   0.0    7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   920   0.0    15
M30465|M30465.1 D.discoideum alpha-fucosidase (A11H2) gene, 5' end.    76   5e-10  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   1e-05  24
CD302011|CD302011.1 AGENCOURT_14240768 NICHD_XGC_Eye1 Xenopus laevis cDNA clone IMAGE:6959150 5', mRNA sequence.    40   4e-05  3
CB558299|CB558299.1 AGENCOURT_13046311 NICHD_XGC_Kid1 Xenopus laevis cDNA clone IMAGE:4033292 5', mRNA sequence.    40   9e-05  3
BU905535|BU905535.1 AGENCOURT_10164307 NICHD_XGC_Kid1 Xenopus laevis cDNA clone IMAGE:4033292 5', mRNA sequence.    40   1e-04  3
CK805317|CK805317.1 AGENCOURT_19148074 NICHD_XGC_Te2 Xenopus laevis cDNA clone IMAGE:7211066 5', mRNA sequence.    40   1e-04  3
BP187992|BP187992.1 Dugesia japonica cDNA, clone: 02465_HH, expressed in the head.    46   3e-04  2
BP186699|BP186699.1 Dugesia japonica cDNA, clone: 01218_HH, expressed in the head.    46   3e-04  2
dna update 2004. 4.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P10901) RecName: Full=Alpha-L-fucosidase;          EC=3.2.1.51;...   357   6e-97
BC050158_1(BC050158|pid:none) Danio rerio fucosidase, alpha-L- 1...   193   1e-47
BC066691_1(BC066691|pid:none) Danio rerio fucosidase, alpha-L- 1...   193   1e-47
BC078236_1(BC078236|pid:none) Danio rerio zgc:101116, mRNA (cDNA...   190   7e-47
(Q99KR8) RecName: Full=Plasma alpha-L-fucosidase;          EC=3....   185   3e-45
AK008653_1(AK008653|pid:none) Mus musculus adult male stomach cD...   185   3e-45
BC018181_1(BC018181|pid:none) Mus musculus fucosidase, alpha-L- ...   184   4e-45
BC088008_1(BC088008|pid:none) Xenopus tropicalis hypothetical LO...   184   5e-45
BC074217_1(BC074217|pid:none) Xenopus laevis cDNA clone MGC:8339...   182   1e-44
BC042266_1(BC042266|pid:none) Xenopus laevis similar to fucosida...   182   1e-44
protein update 2009. 4.20
PSORT 

 psg: 1.02  gvh: 0.67  alm: 0.32  top: 0.27  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 20.0 %: mitochondrial
	 12.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic

>> prediction for AFF793 is exc
5' end seq. ID AFF793F
5' end seq. 
>AFF793F.Seq
ACATCTTTTAGATTACAAGTATTGGTGTAATAATAATATAAAAAGTAATAAAAAATAAAA
AAAATGAAGATGATAATCATTTTTTTTATATTGTTAATATTAAATTTAATTAAATCTCAA
CAGTATGGACCAACATGGGACCAAATTAATTCAAGACCATTACCAGGTTGGTATGATGAT
GTAAAGTTTGGAATATTTATTCATTTTGGAATTTATAGTGTACCAGCATTTGCAAATGGA
GGATATGCAGAATGGTATTGGTGGACATTAAAAAATCCAAGTTCTGATGGTGGTGCAACA
CAAAGATATCATGAAAAAGAGTTTGGAGCCAATTTTACATATCAAGATTTCGTTTCAAGA
TTTGATTGTCGTTTATTCGATGCTAATGAATGGGCATCAATAATTGAAAAATCTGGTGCA
AAATATGTAGTTTTAACATCAAAACATCATGAAGGTTATACCCTTTGGAATAGTGAACAA
TCATGGAATTGGAATTCTGTTGAAACTGGTCCTGGTATTGATATCGTTGGTGAGTTAACA
AAATCTGTTAAAAACATGGGTTTACATATGGGTCTTTATCATTCTTTATTTGAATGGTT-
---------
Length of 5' end seq. 599
3' end seq. ID AFF793Z
3' end seq. 
>AFF793Z.Seq
----------TAAACTTCAATCACATAAATGGGAAAAATTGTGCAACCATTGGATATTCA
TATGGTTATGATGAATATGAACAGGCTACTGATTATCAAAATGCTACAGAGTTAATAATT
GATTTGGTAACAACGGTTGCATGTGGTGGTAATTTCTTATTGGATGTAGGCCCAGATGCT
CAAGGTACAATTCCAAATAATATGGTTGACCGTTTATTAGAGATTGGTAATTGGTTATCA
ATTAATTCTGAATCAATTTATGGTAGTTCACCATGGAGAGTTCAAAATATGACTTTTAAC
ATCTGGTATACTACAAATACTACCAATGGTAATGTTTATGCATTTGTATTTGAATTACCA
GATGATGGTGTTTTAATTTTAAGTGATCCAATTGGTAATAATAAAACAGAAGCAACTTTA
TTAGGTTTAAAAGGTGAAAAAGGTGTTGAAGTATCATTACCAATTGAATCAACAAAACCT
GGTATTACACTAAACATTNCCAATGGTTGCACCACAAGATTATCCACCATATGTTTATGT
TTTAGNATTAACTGNAGTGNANAAAAAAAANAAAAAAAAAAAAAA
Length of 3' end seq. 575
Connected seq. ID AFF793P
Connected seq. 
>AFF793P.Seq
ACATCTTTTAGATTACAAGTATTGGTGTAATAATAATATAAAAAGTAATAAAAAATAAAA
AAAATGAAGATGATAATCATTTTTTTTATATTGTTAATATTAAATTTAATTAAATCTCAA
CAGTATGGACCAACATGGGACCAAATTAATTCAAGACCATTACCAGGTTGGTATGATGAT
GTAAAGTTTGGAATATTTATTCATTTTGGAATTTATAGTGTACCAGCATTTGCAAATGGA
GGATATGCAGAATGGTATTGGTGGACATTAAAAAATCCAAGTTCTGATGGTGGTGCAACA
CAAAGATATCATGAAAAAGAGTTTGGAGCCAATTTTACATATCAAGATTTCGTTTCAAGA
TTTGATTGTCGTTTATTCGATGCTAATGAATGGGCATCAATAATTGAAAAATCTGGTGCA
AAATATGTAGTTTTAACATCAAAACATCATGAAGGTTATACCCTTTGGAATAGTGAACAA
TCATGGAATTGGAATTCTGTTGAAACTGGTCCTGGTATTGATATCGTTGGTGAGTTAACA
AAATCTGTTAAAAACATGGGTTTACATATGGGTCTTTATCATTCTTTATTTGAATGGTT-
---------TAAACTTCAATCACATAAATGGGAAAAATTGTGCAACCATTGGATATTCAT
ATGGTTATGATGAATATGAACAGGCTACTGATTATCAAAATGCTACAGAGTTAATAATTG
ATTTGGTAACAACGGTTGCATGTGGTGGTAATTTCTTATTGGATGTAGGCCCAGATGCTC
AAGGTACAATTCCAAATAATATGGTTGACCGTTTATTAGAGATTGGTAATTGGTTATCAA
TTAATTCTGAATCAATTTATGGTAGTTCACCATGGAGAGTTCAAAATATGACTTTTAACA
TCTGGTATACTACAAATACTACCAATGGTAATGTTTATGCATTTGTATTTGAATTACCAG
ATGATGGTGTTTTAATTTTAAGTGATCCAATTGGTAATAATAAAACAGAAGCAACTTTAT
TAGGTTTAAAAGGTGAAAAAGGTGTTGAAGTATCATTACCAATTGAATCAACAAAACCTG
GTATTACACTAAACATTNCCAATGGTTGCACCACAAGATTATCCACCATATGTTTATGTT
TTAGNATTAACTGNAGTGNANAAAAAAAANAAAAAAAAAAAAAA
Length of connected seq. 1174
Full length Seq ID -
Full length Seq. -
Length of full length seq. -