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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHG805
Library CH
(Link to library)
Clone ID CHG805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID CHG805P
(Link to Original site)
Representative DNA sequence 
>CHG805 (CHG805Q) /CSM/CH/CHG8-A/CHG805Q.Seq.d/
CGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAG
AATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAA
CTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCAT
TAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATA
AACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATA
AAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAG
AAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAG
GTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTG
TAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAAT
CACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATT
CAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACAAAATACTG
CTTTAGAXXXXXXXXXXCTTTAGAGAGAATAAAGAACAATTGAATAATATGTACCNTTCA
GAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGGTTTA
ACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATT
AGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGAC
TTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACA
ATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAG
GGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCT
AATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGAT
CATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCT
TTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGAT
CAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACT
GATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCAT
TTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATAGAATTATTTAAATATTCTTTCN
CGGTTCAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
nnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIEEAL
DETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKETAE
SKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASIYQS
QKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---

---FRENKEQLNNMYXSELVTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMGYIRLV
RSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPETIQASTNLDSIIHNLSNNLSEGTE
YFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYIDHMINSKDKLFKKSKAIGAEALLF
TDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCETDQKRMLAEANAKGIKEDQNHLAI
KKIQNFQQE*nylnilsrfk
Translated Amino Acid sequence (All Frames) 
Frame A:
rttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*kkh
*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*kkqq
kvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhrsin
hkriyihnslrmfiyklsiiq*liyfqy**i*iv*lhkill*---

---l*re*rtie*yvpfrvgdrvgkrh*tigclrdwfnlfrsf*tfnhsyw*cygly*ig
qirwftll**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*
il*dvgkrfryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfii
h**wlcnwfglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn
*kdskfptrielfkysfxvq

Frame B:
eqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledrrsi
r*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkrnsr
k*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicidlsi
tkeytytil*ecsftscllfnd*yifsinkfr*ynytkycfr---

---FRENKEQLNNMYXSELVTELERDIRQLGVSETGLTFLDHFRLLITHIGNAMGYIRLV
RSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPETIQASTNLDSIIHNLSNNLSEGTE
YFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYIDHMINSKDKLFKKSKAIGAEALLF
TDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCETDQKRMLAEANAKGIKEDQNHLAI
KKIQNFQQE*nylnilsrfk

Frame C:
nnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIEEAL
DETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKETAE
SKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASIYQS
QKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---

---leriknn*iictxqsw*qswketldnwvsprlv*pf*iildf*slilvmlwvildws
dpvvytivvmlsnsyqt*krfqnski*pqkmpshlkqfklvpiwiqsfiifqiiyqrvln
tlrcw*tfslqsfeislini*risissylpwpqitsii*sivkinslrnqkqsvlklyys
lmmalqlvwlis*ny*ikikisilfigsivfn*nvklikrecwlkqmqkvskrikii*ql
krfkisnknrii*iffxgsr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHG805 (CHG805Q) /CSM/CH/CHG8-A/CHG805Q.Seq.d/                       2803   0.0
VHA684 (VHA684Q) /CSM/VH/VHA6-D/VHA684Q.Seq.d/                       1516   0.0
VHB614 (VHB614Q) /CSM/VH/VHB6-A/VHB614Q.Seq.d/                       1515   0.0
VHK424 (VHK424Q) /CSM/VH/VHK4-A/VHK424Q.Seq.d/                       1513   0.0
VHI518 (VHI518Q) /CSM/VH/VHI5-A/VHI518Q.Seq.d/                       1511   0.0
VHK538 (VHK538Q) /CSM/VH/VHK5-B/VHK538Q.Seq.d/                       1507   0.0
AHN345 (AHN345Q) /CSM/AH/AHN3-B/AHN345Q.Seq.d/                       1507   0.0
AHL641 (AHL641Q) /CSM/AH/AHL6-B/AHL641Q.Seq.d/                       1507   0.0
VHB821 (VHB821Q) /CSM/VH/VHB8-A/VHB821Q.Seq.d/                       1501   0.0
SHK609 (SHK609Q) /CSM/SH/SHK6-A/SHK609Q.Seq.d/                       1501   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   2e-08  25
AE017197|AE017197.1 Rickettsia typhi str. Wilmington complete genome.    34   1e-07  33
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   2e-07  29
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   9e-07  19
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   2e-06  31
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             36   7e-06  34
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    36   2e-05  28
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    30   2e-05  23
AE016749|AE016749.1 Staphylococcus epidermidis ATCC 12228, section 6 of 9 of the complete genome.    38   2e-05  16
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    36   3e-05  21
dna update 2004.10.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               488   e-136
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   239   1e-61
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   239   2e-61
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   239   2e-61
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   237   7e-61
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      237   7e-61
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN...   237   7e-61
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   237   7e-61
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   184   7e-45
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...   179   2e-43
protein update 2009. 4. 1
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHG805 is nuc
5' end seq. ID CHG805F
5' end seq. 
>CHG805F.Seq
CGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAG
AATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAA
CTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCAT
TAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATA
AACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATA
AAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAG
AAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAG
GTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTG
TAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAAT
CACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATT
CAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACAAAATACTG
CTTTAGANNNNNNNNNN
Length of 5' end seq. 677
3' end seq. ID CHG805Z
3' end seq. 
>CHG805Z.Seq
NNNNNNNNNNCTTTAGAGAGAATAAAGAACAATTGAATAATATGTACCNTTCAGAGTTGG
TGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGGTTTAACCTTTT
TAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATTAGATTGG
TCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAA
AGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAG
CTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAGGGTACTG
AATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAAC
ATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGATCATATGA
TCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCTTTATTAT
TCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATA
AAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAA
AGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAA
TTAAAAAGATTCAAAATTTCCAACAAGAATAGAATTATTTAAATATTCTTTCNCGGTTCA
AGA
Length of 3' end seq. 783
Connected seq. ID CHG805P
Connected seq. 
>CHG805P.Seq
CGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAG
AATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAA
CTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCAT
TAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATA
AACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATA
AAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAG
AAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAG
GTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTG
TAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAAT
CACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATT
CAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACAAAATACTG
CTTTAGA----------CTTTAGAGAGAATAAAGAACAATTGAATAATATGTACCNTTCA
GAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGGTTTA
ACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATT
AGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGAC
TTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACA
ATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAG
GGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCT
AATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGAT
CATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCT
TTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGAT
CAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACT
GATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCAT
TTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATAGAATTATTTAAATATTCTTTCN
CGGTTCAAGA
Length of connected seq. 1440
Full length Seq ID -
Full length Seq. -
Length of full length seq. -