>CHH277 (CHH277Q) /CSM/CH/CHH2-D/CHH277Q.Seq.d/
ATTATTGTTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATATATTTA
TTTGTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAGT
TGGAAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTGT
CAATGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTTA
CAAGAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCATT
CCCAAATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGACTA
TAGGCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATAC
AAGCAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATTAGXXX
XXXXXXX

llf*IYNATSFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVV
NVKMDTNGVKYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCDY
RRRVKRIEIERTILSLSFDTSKNQFVTYLNPGCGPFNI---

Frame A:
iivlnl*cykfyknesniylfviiisl*ific*ikllfkswknrmykrirnvfii**nsc
qckngykwskilf*ctrvslqesvmrfky*y*ihtrnpiipkytynrwrlrvhlqlslrl
*aksqtnrnrknyiisqf*ykqksvryllesrvwsfqy---


Frame B:
llf*IYNATSFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVV
NVKMDTNGVKYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCDY
RRRVKRIEIERTILSLSFDTSKNQFVTYLNPGCGPFNI---


Frame C:
ycfkfimlqvlqk*k*yificyyy*fvnfyllnqval*klek*nvqkn*krfyyimkqls
m*kwiqme*niilmhssfltricyai*ililnshqkshhsqiylqqvetsgspstflati
geesne*k*kelyylsvliqakissllt*iqgvvlsil---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHJ874 (AHJ874Q) /CSM/AH/AHJ8-D/AHJ874Q.Seq.d/                        759   0.0
SHL286 (SHL286Q) /CSM/SH/SHL2-D/SHL286Q.Seq.d/                        759   0.0
SHK623 (SHK623Q) /CSM/SH/SHK6-A/SHK623Q.Seq.d/                        759   0.0
SHK528 (SHK528Q) /CSM/SH/SHK5-B/SHK528Q.Seq.d/                        759   0.0
SHK268 (SHK268Q) /CSM/SH/SHK2-C/SHK268Q.Seq.d/                        759   0.0
SHJ796 (SHJ796Q) /CSM/SH/SHJ7-D/SHJ796Q.Seq.d/                        759   0.0
SHJ471 (SHJ471Q) /CSM/SH/SHJ4-C/SHJ471Q.Seq.d/                        759   0.0
SHJ290 (SHJ290Q) /CSM/SH/SHJ2-D/SHJ290Q.Seq.d/                        759   0.0
SHI701 (SHI701Q) /CSM/SH/SHI7-A/SHI701Q.Seq.d/                        759   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.   759   0.0    2
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    34   0.003  15
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    38   0.003  9
AC149779|AC149779.3 Bos taurus  BAC CH240-5F6 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence.    36   0.012  4
BX571850|BX571850.7 Zebrafish DNA sequence from clone DKEY-259L18 in linkage group 23.    34   0.014  8
CR388207|CR388207.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-28E16.    36   0.015  6
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           32   0.021  16
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    36   0.029  10
AP001119|AP001119.1 Buchnera sp. APS genomic DNA, complete sequence, segment 2/2.    34   0.029  10
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   0.032  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374901_1(FJ374901|pid:none) Dictyostelium discoideum strain QS...   211   7e-54
FJ374891_1(FJ374891|pid:none) Dictyostelium discoideum strain QS...   211   7e-54
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   209   2e-53
FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS...   209   2e-53
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   207   7e-53
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   206   2e-52
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS...   206   2e-52
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   204   1e-51
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   204   1e-51
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS...   204   1e-51

 psg: 0.95  gvh: 0.68  alm: 0.53  top: 0.60  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  4.0 %: plasma membrane

>> prediction for CHH277 is exc

>CHH277F.Seq
ATTATTGTTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATATATTTA
TTTGTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAGT
TGGAAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTGT
CAATGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTTA
CAAGAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCATT
CCCAAATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGACTA
TAGGCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATAC
AAGCAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTCAATATTAGNNN
NNNNNNN