>CHH490 (CHH490Q) /CSM/CH/CHH4-D/CHH490Q.Seq.d/
XXXXXXXXXXATTGAAAATAAATCATCGAGTACAAGATCAAACACATTTGTATATAAGAG
ACAGACTGGTATACCATTAAAGGATCAAAAAACATTGGAAGATTTAGAAGAAATGTTCAA
TCAAGTTAAAGCACATACTATTGATATTAACCAAGTTCCAATGTATTCGATTGTACCTGC
TATTAAAAATAATGAATATGAGCAATGGAAATATGCATTAAATAACAAGGATATCATTTT
CATTGATAATCTATTGATTGTAACTGGAAGTTTCAATCCAACCTATGACAGTCTTGAATG
TGAGAATCGTACATTAATATTCACATTTGATTTACCAGATATTCCAGAATCTCATTTCTC
TCATTCAATCTACTATGATCCAAGTGACAAAGTTAGATACTTAAAAGTCTCGGGTAATAG
AAAATTAAGTTATAGAGCATTAACTGGTACACGTGGTGGTGAGAGTACAATTAATGAATA
TCCATCAGCTGGTGTTAAAATTGGTAATAGTTTAAATCTTAGAAAAGATGGAGAATTTGA
TCTGAGAATTCCAATTGAAGCNAATTATAGTAAAAATTATTCNAATCATTTTGAAAATGG
TGTTTCAACATTAACATTTAAAGAAGTAAATGNNGGTCTTCCA

---ENKSSSTRSNTFVYKRQTGIPLKDQKTLEDLEEMFNQVKAHTIDINQVPMYSIVPAI
KNNEYEQWKYALNNKDIIFIDNLLIVTGSFNPTYDSLECENRTLIFTFDLPDIPESHFSH
SIYYDPSDKVRYLKVSGNRKLSYRALTGTRGGESTINEYPSAGVKIGNSLNLRKDGEFDL
RIPIEANYSKNYSNHFENGVSTLTFKEVNXGLP

Frame A:
---lkinhrvqdqthlyirdrlvyh*rikkhwki*kkcsiklkhilliltkfqcirlyll
lkimnmsngnmh*itrisfsliiy*l*levsiqpmtvlnvrivh*yshliyqifqnlisl
iqstmiqvtkldt*ksrvien*vieh*lvhvvvrvqlmnihqlvlklviv*ilekmenli
*efqlkxiivkiixiilkmvfqh*hlkk*mxvf


Frame B:
---*k*iieykikhici*etdwytikgsknigrfrrnvqss*styy*y*pssnvfdctcy
*k**i*ameicik*qgyhfh**sidcnwkfqsnl*qs*m*esyinihi*ftrysrisfls
fnll*sk*qs*ilkslg**kikl*sinwytww*eyn**isiswc*nw**fks*krwri*s
ensn*sxl**klfxsf*kwcfnini*rskxxss


Frame C:
---ENKSSSTRSNTFVYKRQTGIPLKDQKTLEDLEEMFNQVKAHTIDINQVPMYSIVPAI
KNNEYEQWKYALNNKDIIFIDNLLIVTGSFNPTYDSLECENRTLIFTFDLPDIPESHFSH
SIYYDPSDKVRYLKVSGNRKLSYRALTGTRGGESTINEYPSAGVKIGNSLNLRKDGEFDL
RIPIEANYSKNYSNHFENGVSTLTFKEVNXGLP

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH490 (CHH490Q) /CSM/CH/CHH4-D/CHH490Q.Seq.d/                       1231   0.0
AHE564 (AHE564Q) /CSM/AH/AHE5-C/AHE564Q.Seq.d/                       1199   0.0
AHD861 (AHD861Q) /CSM/AH/AHD8-C/AHD861Q.Seq.d/                       1199   0.0
AFK186 (AFK186Q) /CSM/AF/AFK1-D/AFK186Q.Seq.d/                       1193   0.0
AFI865 (AFI865Q) /CSM/AF/AFI8-C/AFI865Q.Seq.d/                       1193   0.0
AHI704 (AHI704Q) /CSM/AH/AHI7-A/AHI704Q.Seq.d/                       1191   0.0
CHI178 (CHI178Q) /CSM/CH/CHI1-D/CHI178Q.Seq.d/                       1179   0.0
AFA349 (AFA349Q) /CSM/AF/AFA3-C/AFA349Q.Seq.d/                       1162   0.0
AHL245 (AHL245Q) /CSM/AH/AHL2-B/AHL245Q.Seq.d/                       1150   0.0
AHL469 (AHL469Q) /CSM/AH/AHL4-C/AHL469Q.Seq.d/                       1074   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U82514|U82514.1 Dictyostelium discoideum random slug cDNA6 protein (rsc6) mRNA, partial cds.   894   0.0    1
AC079537|AC079537.1 Mus musculus clone RP23-35B12, WORKING DRAFT SEQUENCE, 34 unordered pieces.    42   5e-04  8
AC102568|AC102568.8 Mus musculus chromosome 1, clone RP23-224O10, complete sequence.    34   0.003  8
AE017294|AE017294.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, section 8 of 14 of the complete sequence.    38   0.005  10
CV349354|CV349354.1 MR2-HT1163-180101-002-e08 HT1163 Homo sapiens cDNA, mRNA sequence.    40   0.010  2
AC125120|AC125120.4 Mus musculus BAC clone RP24-267M16 from chromosome 1, complete sequence.    38   0.028  5
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          30   0.043  16
AC149278|AC149278.1 Mus musculus chromosome 7 clone RP24-101G17, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    42   0.049  6
AC141644|AC141644.3 Mus musculus chromosome 6 clone RP23-115F21, WORKING DRAFT SEQUENCE, 6 unordered pieces.    34   0.075  9
AC099901|AC099901.1 Mus musculus clone RP23-12B15, LOW-PASS SEQUENCE SAMPLING.    42   0.095  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82514_1(U82514|pid:none) Dictyostelium discoideum random slug c...   315   7e-85
(Q54QE8) RecName: Full=Heat shock protein DDB_G0283913;                59   9e-08
CP000139_1435(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    37   0.47
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte...    37   0.47
CP000749_2548(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    35   1.4
AP004237_196(AP004237|pid:none) Proteus vulgaris plasmid Rts1 DN...    35   1.4
AJ698720_112(AJ698720|pid:none) Yersinia pestis pG8786 plasmid. ...    35   1.4
AE017321_375(AE017321|pid:none) Wolbachia endosymbiont strain TR...    35   1.4
CP000084_788(CP000084|pid:none) Candidatus Pelagibacter ubique H...    35   1.8
CR382128_598(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    35   1.8

 psg: 0.56  gvh: 0.29  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHH490 is nuc

>CHH490Z.Seq
NNNNNNNNNNATTGAAAATAAATCATCGAGTACAAGATCAAACACATTTGTATATAAGAG
ACAGACTGGTATACCATTAAAGGATCAAAAAACATTGGAAGATTTAGAAGAAATGTTCAA
TCAAGTTAAAGCACATACTATTGATATTAACCAAGTTCCAATGTATTCGATTGTACCTGC
TATTAAAAATAATGAATATGAGCAATGGAAATATGCATTAAATAACAAGGATATCATTTT
CATTGATAATCTATTGATTGTAACTGGAAGTTTCAATCCAACCTATGACAGTCTTGAATG
TGAGAATCGTACATTAATATTCACATTTGATTTACCAGATATTCCAGAATCTCATTTCTC
TCATTCAATCTACTATGATCCAAGTGACAAAGTTAGATACTTAAAAGTCTCGGGTAATAG
AAAATTAAGTTATAGAGCATTAACTGGTACACGTGGTGGTGAGAGTACAATTAATGAATA
TCCATCAGCTGGTGTTAAAATTGGTAATAGTTTAAATCTTAGAAAAGATGGAGAATTTGA
TCTGAGAATTCCAATTGAAGCNAATTATAGTAAAAATTATTCNAATCATTTTGAAAATGG
TGTTTCAACATTAACATTTAAAGAAGTAAATGNNGGTCTTCCA