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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHH728
Library CH
(Link to library)
Clone ID CHH728
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13005-1|Contig-U16264-1
Original site URL
Representative seq. ID CHH728P
(Link to Original site)
Representative DNA sequence 
>CHH728 (CHH728Q) /CSM/CH/CHH7-B/CHH728Q.Seq.d/
TTTTTTTTNAAAAAAAAAANANNTTTAAANAAACCTTTTNAAAATTTTTTTTNNTTNNCC
CATTTTTAAAAAAAAAAAANCCCNTTAAAAAAAAAAAANTNAAAAAAAAAXXXXXXXXXX
CTGGTCAATTGAAGATGTTGTTAGTTCCATTCCTTTTGGAAGAATTTAGAACCATCACCA
TTCCACCACAATCTGGTTTAACTCNTGATAGAAATTTAGGTTACCGTATTGGTGCTGTCA
ATCTCTCATCGATTGAATTGCTTCCAGAGAATATTCATTTTGAAATCTCGCATAAAACCA
ATGCTGATCCATACACCCTCTCCATCATTGATCCGGATACTATCGTTTGGATTGAACTCA
CTTCAATTCGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAA
sequence update 2002.10.25
Translated Amino Acid sequence 
FFXKKXXFKXTFXKFFXXXPFLKKKXPXKKKKXKKK---

---GQLKMLLVPFLLEEFRTITIPPQSGLTXDRNLGYRIGAVNLSSIELLPENIHFEISH
KTNADPYTLSIIDPDTIVWIELTSIRARINALPWEFE
Translated Amino Acid sequence (All Frames) 
Frame A:
ffxkkkxxlxkpfxnffxxxhf*kkkxplkkkxxkk---

---lvn*rcc*fhsfwknlepspfhhnlv*lxiei*vtvlvlsishrlncfqrifilksr
ikpmlihtpspslirilsfglnslqfvlvsmlyhgsl

Frame B:
ffxkkkxx*xnlxkiffxxpifkkkkxx*kkkxxkk---

---wsiedvvssipfgri*nhhhsttiwfns**kfrlpywccqslid*iasreysf*nla
*nqc*sihplhh*sgyyrld*thfnscsyqcftmgv*

Frame C:
FFXKKXXFKXTFXKFFXXXPFLKKKXPXKKKKXKKK---

---GQLKMLLVPFLLEEFRTITIPPQSGLTXDRNLGYRIGAVNLSSIELLPENIHFEISH
KTNADPYTLSIIDPDTIVWIELTSIRARINALPWEFE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH728 (CHH728Q) /CSM/CH/CHH7-B/CHH728Q.Seq.d/                        557   e-158
CHR124 (CHR124Q) /CSM/CH/CHR1-A/CHR124Q.Seq.d/                        541   e-153
CHQ724 (CHQ724Q) /CSM/CH/CHQ7-A/CHQ724Q.Seq.d/                        541   e-153
CHO139 (CHO139Q) /CSM/CH/CHO1-B/CHO139Q.Seq.d/                        541   e-153
CHM583 (CHM583Q) /CSM/CH/CHM5-D/CHM583Q.Seq.d/                        541   e-153
CHL753 (CHL753Q) /CSM/CH/CHL7-C/CHL753Q.Seq.d/                        541   e-153
CHL434 (CHL434Q) /CSM/CH/CHL4-B/CHL434Q.Seq.d/                        541   e-153
CHH351 (CHH351Q) /CSM/CH/CHH3-C/CHH351Q.Seq.d/                        541   e-153
CHG369 (CHG369Q) /CSM/CH/CHG3-C/CHG369Q.Seq.d/                        541   e-153
CHF681 (CHF681Q) /CSM/CH/CHF6-D/CHF681Q.Seq.d/                        541   e-153
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX682537|BX682537.3 Mouse DNA sequence from clone RP23-376N23 on chromosome 2.    36   2.9    3
AL845491|AL845491.3 Mouse DNA sequence from clone RP23-360A2 on chromosome 2.    36   6.1    2
AC118268|AC118268.4 Mus musculus chromosome 10 clone RP24-576A6 map 10, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    42   6.9    1
AL439945|AL439945.1 T3 end of clone BD0AA009A02 of library BD0AA from strain CBS 94 of  Candida tropicalis.    42   6.9    1
AY485615|AY485615.1 Candida tropicalis DNA-dependent RNA polymerase II second largest subunit gene, partial cds.    42   6.9    1
BZ703016|BZ703016.1 PUBLQ29TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa083F09, DNA sequence.    30   7.1    3
CR788287|CR788287.2 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-362B9.    36   8.0    2
dna update 2004.11.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000031_3342(CP000031|pid:none) Silicibacter pomeroyi DSS-3, co...    32   8.6
protein update 2008.10.31
PSORT 

 psg: 0.79  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.14  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHH728 is nuc
5' end seq. ID CHH728F
5' end seq. 
>CHH728F.Seq
TTTTTTTTNAAAAAAAAAANANNTTTAAANAAACCTTTTNAAAATTTTTTTTNNTTNNCC
CATTTTTAAAAAAAAAAAANCCCNTTAAAAAAAAAAAANTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 120
3' end seq. ID CHH728Z
3' end seq. 
>CHH728Z.Seq
NNNNNNNNNNCTGGTCAATTGAAGATGTTGTTAGTTCCATTCCTTTTGGAAGAATTTAGA
ACCATCACCATTCCACCACAATCTGGTTTAACTCNTGATAGAAATTTAGGTTACCGTATT
GGTGCTGTCAATCTCTCATCGATTGAATTGCTTCCAGAGAATATTCATTTTGAAATCTCG
CATAAAACCAATGCTGATCCATACACCCTCTCCATCATTGATCCGGATACTATCGTTTGG
ATTGAACTCACTTCAATTCGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAA
Length of 3' end seq. 294
Connected seq. ID CHH728P
Connected seq. 
>CHH728P.Seq
TTTTTTTTNAAAAAAAAAANANNTTTAAANAAACCTTTTNAAAATTTTTTTTNNTTNNCC
CATTTTTAAAAAAAAAAAANCCCNTTAAAAAAAAAAAANTNAAAAAAAAA----------
CTGGTCAATTGAAGATGTTGTTAGTTCCATTCCTTTTGGAAGAATTTAGAACCATCACCA
TTCCACCACAATCTGGTTTAACTCNTGATAGAAATTTAGGTTACCGTATTGGTGCTGTCA
ATCTCTCATCGATTGAATTGCTTCCAGAGAATATTCATTTTGAAATCTCGCATAAAACCA
ATGCTGATCCATACACCCTCTCCATCATTGATCCGGATACTATCGTTTGGATTGAACTCA
CTTCAATTCGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAA
Length of connected seq. 394
Full length Seq ID -
Full length Seq. -
Length of full length seq. -