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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH748
Library CH
(Link to library)
Clone ID CHH748
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12702-1|Contig-U15758-1
Original site URL
Representative seq. ID CHH748P
(Link to Original site)
Representative DNA sequence 
>CHH748 (CHH748Q) /CSM/CH/CHH7-B/CHH748Q.Seq.d/
ATTAAAATATACACACATACATATATAAACGGTTAAACAAATAATTTTATTTGTATTTTA
TTTGTAATATAAATTTTTATTTAATTTTTAATTTTATTTTTTTAAATAGTAGTAGTAGCA
AAAACAATAATAATAATAATAATAATAAAATAACAAAATGTCTCAAAGGGAATGGACAAC
AGCATCTACAAGCGATTTAATGTCGAATTTATTAAACAATCATAATTCAAATAATAGTAA
TAATAATAATAATAATAATAATAATAATAATAATAATAACAATAACAATAATGATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGCAANNACCN
ACCATTATTAAGAXXXXXXXXXXACTTCAGAGATTAAAAGAAAACTTCANTCTTGGGAAT
TTGAATATATTCAAAAGAATTATTTCGATGGTAAGGTTACAGTTAGCAAATCAGAGTGTA
AAACATTTTGGGATCGTTTTGGTCCAATCTTTCAAACTATTCATTTCAAAAGACATATTG
AACCA
sequence update 2002.10.25
Translated Amino Acid sequence 
lkythihi*tvkqiilfvfyl*ykflfnf*fyffk****qkq*******NNKMSQREWTT
ASTSDLMSNLLNNHNSNNSNNNNNNNNNNNNNNNNNNDNNNNNNNNNNNNNNNNNNSXXX
PLLR---

---TSEIKRKLXSWEFEYIQKNYFDGKVTVSKSECKTFWDRFGPIFQTIHFKRHIEP
Translated Amino Acid sequence (All Frames) 
Frame A:
ikiythtying*tnnficilfvi*ifi*flilff*ivvvaktiiiiiiik*qnvskgmdn
siykrfnvefikqs*fk****************q*q*********************qxp
tiik---

---TSEIKRKLXSWEFEYIQKNYFDGKVTVSKSECKTFWDRFGPIFQTIHFKRHIEP

Frame B:
lkythihi*tvkqiilfvfyl*ykflfnf*fyffk****qkq*******NNKMSQREWTT
ASTSDLMSNLLNNHNSNNSNNNNNNNNNNNNNNNNNNDNNNNNNNNNNNNNNNNNNSXXX
PLLR---

---lqrlkenfxlgnlnifkriismvrlqlanqsvkhfgivlvqsfklfiskdiln

Frame C:
*nihtyiykrlnk*fylyficninfylifnfiflnssssknnnnnnnnkitkclkgngqq
hlqai*criy*tiiiqiiviiiiiiiiiiiiititimiiiiiiiiiiiiiiiiiiiaxtx
hy*---

---frd*kktsxlgi*iyskelfrw*gys*qirv*nilgsfwsnlsnysfqkty*t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH748 (CHH748Q) /CSM/CH/CHH7-B/CHH748Q.Seq.d/                        315   4e-85
SHG608 (SHG608Q) /CSM/SH/SHG6-A/SHG608Q.Seq.d/                        307   9e-83
CHH302 (CHH302Q) /CSM/CH/CHH3-A/CHH302Q.Seq.d/                        307   9e-83
AHN745 (AHN745Q) /CSM/AH/AHN7-B/AHN745Q.Seq.d/                        307   9e-83
AHK357 (AHK357Q) /CSM/AH/AHK3-C/AHK357Q.Seq.d/                        307   9e-83
AHG625 (AHG625Q) /CSM/AH/AHG6-B/AHG625Q.Seq.d/                        307   9e-83
CHH707 (CHH707Q) /CSM/CH/CHH7-A/CHH707Q.Seq.d/                        301   6e-81
SHB527 (SHB527Q) /CSM/SH/SHB5-B/SHB527Q.Seq.d/                        151   1e-35
SFJ451 (SFJ451Q) /CSM/SF/SFJ4-C/SFJ451Q.Seq.d/                        151   1e-35
CHH239 (CHH239Q) /CSM/CH/CHH2-B/CHH239Q.Seq.d/                        151   1e-35
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   307   e-128  9
BX005234|BX005234.15 Zebrafish DNA sequence from clone DKEY-7J14 in linkage group 16.    42   2e-04  5
AP004734|AP004734.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23.    42   4e-04  5
CR762497|CR762497.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   4e-04  5
CG696971|CG696971.1 MUGQ_CH252P002Q1T7_H25_CD316_003 CHORI-252 Vervet Monkey Library Cercopithecus aethiops genomic clone CH252-2E1, genomic survey sequence.    42   0.003  2
CL370682|CL370682.1 RPCI44_296A17.r RPCI-44 Sus scrofa genomic clone RPCI44_296A17, genomic survey sequence.    38   0.003  2
AQ984702|AQ984702.1 RPCI-23-266O1.TJB RPCI-23 Mus musculus genomic clone RPCI-23-266O1, genomic survey sequence.    42   0.003  2
AC116672|AC116672.3 Mus musculus chromosome 10 clone RP24-501G17 map 10, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42   0.004  3
CG027925|CG027925.1 CHGAF76TF CHGA Cleome hassleriana genomic clone CHGAF76, genomic survey sequence.    42   0.004  2
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    42   0.004  7
dna update 2004.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_84(AC116305|pid:none) Dictyostelium discoideum chromoso...   115   9e-25
(Q70GP4) RecName: Full=Signal transducer and activator of transc...    45   9e-04
(O00910) RecName: Full=Signal transducer and activator of transc...    42   0.007
(Q54BD4) RecName: Full=Signal transducer and activator of transc...    33   3.5
AJ301670_1(AJ301670|pid:none) Dictyostelium discoideum mRNA for ...    33   3.5
protein update 2008.10.31
PSORT 

 psg: 0.74  gvh: 0.29  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHH748 is cyt
5' end seq. ID CHH748F
5' end seq. 
>CHH748F.Seq
ATTAAAATATACACACATACATATATAAACGGTTAAACAAATAATTTTATTTGTATTTTA
TTTGTAATATAAATTTTTATTTAATTTTTAATTTTATTTTTTTAAATAGTAGTAGTAGCA
AAAACAATAATAATAATAATAATAATAAAATAACAAAATGTCTCAAAGGGAATGGACAAC
AGCATCTACAAGCGATTTAATGTCGAATTTATTAAACAATCATAATTCAAATAATAGTAA
TAATAATAATAATAATAATAATAATAATAATAATAATAACAATAACAATAATGATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGCAANNACCN
ACCATTATTAAGANNNNNNNNNN
Length of 5' end seq. 383
3' end seq. ID CHH748Z
3' end seq. 
>CHH748Z.Seq
NNNNNNNNNNACTTCAGAGATTAAAAGAAAACTTCANTCTTGGGAATTTGAATATATTCA
AAAGAATTATTTCGATGGTAAGGTTACAGTTAGCAAATCAGAGTGTAAAACATTTTGGGA
TCGTTTTGGTCCAATCTTTCAAACTATTCATTTCAAAAGACATATTGAACCA
Length of 3' end seq. 172
Connected seq. ID CHH748P
Connected seq. 
>CHH748P.Seq
ATTAAAATATACACACATACATATATAAACGGTTAAACAAATAATTTTATTTGTATTTTA
TTTGTAATATAAATTTTTATTTAATTTTTAATTTTATTTTTTTAAATAGTAGTAGTAGCA
AAAACAATAATAATAATAATAATAATAAAATAACAAAATGTCTCAAAGGGAATGGACAAC
AGCATCTACAAGCGATTTAATGTCGAATTTATTAAACAATCATAATTCAAATAATAGTAA
TAATAATAATAATAATAATAATAATAATAATAATAATAACAATAACAATAATGATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGCAANNACCN
ACCATTATTAAGA----------ACTTCAGAGATTAAAAGAAAACTTCANTCTTGGGAAT
TTGAATATATTCAAAAGAATTATTTCGATGGTAAGGTTACAGTTAGCAAATCAGAGTGTA
AAACATTTTGGGATCGTTTTGGTCCAATCTTTCAAACTATTCATTTCAAAAGACATATTG
AACCA
Length of connected seq. 535
Full length Seq ID -
Full length Seq. -
Length of full length seq. -