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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI103
Library CH
(Link to library)
Clone ID CHI103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHI103 (CHI103Q) /CSM/CH/CHI1-A/CHI103Q.Seq.d/
XXXXXXXXXXGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTT
GAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATCTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCC
TGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACA
AGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATA
ATTTAATCATTNCTTNCTTTTAAAAAACT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---EDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITN
EQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEE
QFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKESQRQDQQKKQKIQQEND
AVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQD
KLNQEKNQQLLEQEQNQK*fnhxxllkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---lkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklp
mnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkk
nnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknlkdkinkrnkkfnkrt
mlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnk
in*ikkkinny*nknkiknnliixxf*kt


Frame B:
---*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq
*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rr
tifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrer
cclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr
*iksrkkstiirtrtkskii*sxlxfkk


Frame C:
---EDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITN
EQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEE
QFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKESQRQDQQKKQKIQQEND
AVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQD
KLNQEKNQQLLEQEQNQK*fnhxxllkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        789   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        789   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        789   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        789   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        789   0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/                        789   0.0
SHL145 (SHL145Q) /CSM/SH/SHL1-B/SHL145Q.Seq.d/                        789   0.0
SHL122 (SHL122Q) /CSM/SH/SHL1-A/SHL122Q.Seq.d/                        789   0.0
SHL121 (SHL121Q) /CSM/SH/SHL1-A/SHL121Q.Seq.d/                        789   0.0
SHJ868 (SHJ868Q) /CSM/SH/SHJ8-C/SHJ868Q.Seq.d/                        789   0.0
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   789   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-29  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   4e-11  20
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   2e-09  18
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    38   4e-08  23
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-07  21
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   2e-07  27
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12 section 7 of 9 of the complete sequence.    38   1e-06  12
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    36   2e-06  13
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   3e-06  17
dna update 2004.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   301   2e-80
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    39   0.19
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.33
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.33
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    38   0.43
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.56
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.73
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   0.95
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    37   0.95
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.6
protein update 2009. 5.19
PSORT 

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHI103 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI103Z
3' end seq. 
>CHI103Z.Seq
NNNNNNNNNNGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTT
GAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATCTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCC
TGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACA
AGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATA
ATTTAATCATTNCTTNCTTTTAAAAAACT
Length of 3' end seq. 809
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -