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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI219
Library CH
(Link to library)
Clone ID CHI219
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11708-1|Contig-U13008-1
Original site URL
Representative seq. ID CHI219P
(Link to Original site)
Representative DNA sequence 
>CHI219 (CHI219Q) /CSM/CH/CHI2-A/CHI219Q.Seq.d/
GAAAAAAGAAAAATTATTATTTGGAATTATTTTAATATTTTTAATTAGTTATATAAATTT
TATTAAATCATGTGAAGTTACTGGTCAAATATTAAAATGTTCACAATCTTCACTAATTTT
AAAATTAATAAATGGTACAAAGGATACAATTATATTGGATAAAAATAATGGTTATAATAT
ATCAAGTTATCCAAATAAAAAATTTCTTTCTGATCAATATATAAATGGTGAAAGTATTAT
ATTTAATCCAGAGATTTCAATAAATCCAATTCCAACAAGTGGTGGTAAAACACCAATGAT
TGGATACTTTTTATTGGATGGATTTGAAAGTGAAAAATTATTATCAGATAGTAATAATGA
TTTTTTTCATTATGATCCTGTAAATGGTAGTACAATAGATTATTTAATTGATTTACCATC
TGGTTGTAAATCATTTAAAATATTCGATTTTCTAAGTACAAAATCATTATCAACAATTAA
ATATTTACAACCAATTTTATCATCTAAAAAACCATATGAATTCGATAATAATGATAACAA
TAATAACAATGGATATATAATTATAAATGGTGAAAACTTTTCTAATGATTCATCATGTGT
AAATATTAAAATTTCATCAACAATTTTTAAAAACTCAATTCCATCACCAAATTCAATTGA
TCCAAATGAAATAATACTTGATTTTAATXXXXXXXXXXTACAAGTTTAAATAATCAAACA
GAGTTAACTTGTGTTTTACCTGGTATTTTATCAACAATTGTATTTTCAAATGAATCACAA
TCAAAATATTATGTTACCTCTGGTACACATCATAAAATTAAATTGGTAACATCAAAATAT
TCAATTGAATCGTTTAATCCAAATAATCTACTTTTCTCCTATGATCCTCCAATAGTAAAT
ACAACAACCACCGTTAGTGAAGAAGGTGGTTTAATTCATCTAACTGGTACAAGTTTTAAT
AATGTTGGTTTATTCGTAACAGTTGGTAATGTAACTTGTGAAAATCCATACTCTGATACA
TTTGATTCTGTATCATGTTATATCCCACCATTTACTCCAATACTCTCTGATAATAGTACT
CAATGGGTTAATATTACTGTTGATGGTCAAACAAATTCATTTTTTATCTTTAATTATAAT
TTCACCAAAGCAATTAGTTTTGAAGTTGAAAAAGATAGTATGTCAAGTTATTATAAATGG
TTGATACCGGTAGTAATAATTGGTGTATTAGTTATTGTATTAGCAGTAGTTTATTCTGTA
TATATGTTTAAGAAATTCCAAAGATTAAAAAAGATAAAAGAAATGATGAATCCAAAACCC
CCAACAAATCAACCACAAAATAATGCATTTACTCCATCAACACCATCTCTACAAAATTTT
TAAACTGGGATATATATATATGTAAAAACAATCATAAAAAAATAAAAAAAGTAAATAAAC
AATTCGTTTTTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
KKEKLLFGIILIFLISYINFIKSCEVTGQILKCSQSSLILKLINGTKDTIILDKNNGYNI
SSYPNKKFLSDQYINGESIIFNPEISINPIPTSGGKTPMIGYFLLDGFESEKLLSDSNND
FFHYDPVNGSTIDYLIDLPSGCKSFKIFDFLSTKSLSTIKYLQPILSSKKPYEFDNNDNN
NNNGYIIINGENFSNDSSCVNIKISSTIFKNSIPSPNSIDPNEIILDFN---

---TSLNNQTELTCVLPGILSTIVFSNESQSKYYVTSGTHHKIKLVTSKYSIESFNPNNL
LFSYDPPIVNTTTTVSEEGGLIHLTGTSFNNVGLFVTVGNVTCENPYSDTFDSVSCYIPP
FTPILSDNSTQWVNITVDGQTNSFFIFNYNFTKAISFEVEKDSMSSYYKWLIPVVIIGVL
VIVLAVVYSVYMFKKFQRLKKIKEMMNPKPPTNQPQNNAFTPSTPSLQNF*tgiyiyvkt
iikk*kk*innsfl
Translated Amino Acid sequence (All Frames) 
Frame A:
ekrkiiiwnyfnifn*lykfy*im*sywsnikmftiftnfkinkwykgynyig*k*wl*y
iklsk*kisf*siykw*kyyi*srdfnksnsnkww*ntndwilfigwi*k*kiiir****
ffsl*sckw*ynrlfn*ftiwl*ii*nirfskykiiinn*ifttnfii*kti*ir****q
**qwiynykw*klf**fimcky*nfinnf*klnsitkfn*sk*nnt*f*---

---ykfk*snrvnlcftwyfinncifk*itikilcylwyts*n*ignikifn*iv*sk*s
tfll*ssnskynnhr**rrwfnssnwykf**cwfirnsw*cnl*ksil*yi*fcimlypt
iysntl***ysmg*yyc*wsnkfifyl*l*fhqsn*f*s*kr*yvkll*mvdtgsnnwci
sycissslfciyv*eipkikkdkrndesktpnksttk*ciysintistkflnwdiyickn
nhkkikkvnkqfvf

Frame B:
KKEKLLFGIILIFLISYINFIKSCEVTGQILKCSQSSLILKLINGTKDTIILDKNNGYNI
SSYPNKKFLSDQYINGESIIFNPEISINPIPTSGGKTPMIGYFLLDGFESEKLLSDSNND
FFHYDPVNGSTIDYLIDLPSGCKSFKIFDFLSTKSLSTIKYLQPILSSKKPYEFDNNDNN
NNNGYIIINGENFSNDSSCVNIKISSTIFKNSIPSPNSIDPNEIILDFN---

---TSLNNQTELTCVLPGILSTIVFSNESQSKYYVTSGTHHKIKLVTSKYSIESFNPNNL
LFSYDPPIVNTTTTVSEEGGLIHLTGTSFNNVGLFVTVGNVTCENPYSDTFDSVSCYIPP
FTPILSDNSTQWVNITVDGQTNSFFIFNYNFTKAISFEVEKDSMSSYYKWLIPVVIIGVL
VIVLAVVYSVYMFKKFQRLKKIKEMMNPKPPTNQPQNNAFTPSTPSLQNF*tgiyiyvkt
iikk*kk*innsfl

Frame C:
kkknyylelf*yf*lvi*illnhvkllvky*nvhnlh*f*n**mvqriqlywikimviiy
qviqiknfflini*mvkvlyliqrfq*iqfqqvvvkhq*ldtfywmdlkvknyyqivimi
ffimil*mvvq*ii*liyhlvvnhlkysif*vqnhyqqlniynqfyhlknhmnsiimiti
itmdi*l*mvktflmihhv*ilkfhqqflktqfhhqiqliqmk*ylil---

---qv*iikqs*lvfylvfyqqlyfqmnhnqnimlplvhiiklnw*hqniqlnrliqiiy
fspmilq**iqqpplvkkvv*fi*lvqvlimlvys*qlvm*lvkihtlihlilyhvishh
llqysliivlnglilllmvkqihflsliiispkqlvlklkkivcqviing*yr***lvy*
lly*q*filyiclrnskd*kr*kk**iqnpqqinhkimhllhqhhlykifklgyiym*kq
s*knkksk*tirf*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI219 (CHI219Q) /CSM/CH/CHI2-A/CHI219Q.Seq.d/                       2577   0.0
SHE559 (SHE559Q) /CSM/SH/SHE5-C/SHE559Q.Seq.d/                       1205   0.0
SFJ454 (SFJ454Q) /CSM/SF/SFJ4-C/SFJ454Q.Seq.d/                       1176   0.0
CHR334 (CHR334Q) /CSM/CH/CHR3-B/CHR334Q.Seq.d/                       1168   0.0
SHA776 (SHA776Q) /CSM/SH/SHA7-D/SHA776Q.Seq.d/                       1043   0.0
CHG567 (CHG567Q) /CSM/CH/CHG5-C/CHG567Q.Seq.d/                       1017   0.0
CHJ893 (CHJ893Q) /CSM/CH/CHJ8-D/CHJ893Q.Seq.d/                        995   0.0
CHR582 (CHR582Q) /CSM/CH/CHR5-D/CHR582Q.Seq.d/                        961   0.0
CHO436 (CHO436Q) /CSM/CH/CHO4-B/CHO436Q.Seq.d/                        916   0.0
CHJ544 (CHJ544Q) /CSM/CH/CHJ5-B/CHJ544Q.Seq.d/                        839   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    52   1e-18  23
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    48   2e-17  28
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48   3e-17  27
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   4e-17  21
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    44   1e-16  19
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   4e-16  29
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    46   2e-15  18
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    40   3e-15  24
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   1e-14  25
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  44   2e-14  18
dna update 2004.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    52   5e-05
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    48   0.001
FJ374897_1(FJ374897|pid:none) Dictyostelium discoideum strain QS...    42   0.041
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...    42   0.053
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    42   0.069
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    40   0.15
FJ374910_1(FJ374910|pid:none) Dictyostelium discoideum strain QS...    40   0.20
FP236842_1010(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9...    39   0.34
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...    38   0.77
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...    38   0.77
protein update 2009. 4. 2
PSORT 

 psg: 1.00  gvh: 0.59  alm: 0.06  top: 0.40  tms: 0.13  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for CHI219 is end
5' end seq. ID CHI219F
5' end seq. 
>CHI219F.Seq
GAAAAAAGAAAAATTATTATTTGGAATTATTTTAATATTTTTAATTAGTTATATAAATTT
TATTAAATCATGTGAAGTTACTGGTCAAATATTAAAATGTTCACAATCTTCACTAATTTT
AAAATTAATAAATGGTACAAAGGATACAATTATATTGGATAAAAATAATGGTTATAATAT
ATCAAGTTATCCAAATAAAAAATTTCTTTCTGATCAATATATAAATGGTGAAAGTATTAT
ATTTAATCCAGAGATTTCAATAAATCCAATTCCAACAAGTGGTGGTAAAACACCAATGAT
TGGATACTTTTTATTGGATGGATTTGAAAGTGAAAAATTATTATCAGATAGTAATAATGA
TTTTTTTCATTATGATCCTGTAAATGGTAGTACAATAGATTATTTAATTGATTTACCATC
TGGTTGTAAATCATTTAAAATATTCGATTTTCTAAGTACAAAATCATTATCAACAATTAA
ATATTTACAACCAATTTTATCATCTAAAAAACCATATGAATTCGATAATAATGATAACAA
TAATAACAATGGATATATAATTATAAATGGTGAAAACTTTTCTAATGATTCATCATGTGT
AAATATTAAAATTTCATCAACAATTTTTAAAAACTCAATTCCATCACCAAATTCAATTGA
TCCAAATGAAATAATACTTGATTTTAATNNNNNNNNNN
Length of 5' end seq. 698
3' end seq. ID CHI219Z
3' end seq. 
>CHI219Z.Seq
NNNNNNNNNNTACAAGTTTAAATAATCAAACAGAGTTAACTTGTGTTTTACCTGGTATTT
TATCAACAATTGTATTTTCAAATGAATCACAATCAAAATATTATGTTACCTCTGGTACAC
ATCATAAAATTAAATTGGTAACATCAAAATATTCAATTGAATCGTTTAATCCAAATAATC
TACTTTTCTCCTATGATCCTCCAATAGTAAATACAACAACCACCGTTAGTGAAGAAGGTG
GTTTAATTCATCTAACTGGTACAAGTTTTAATAATGTTGGTTTATTCGTAACAGTTGGTA
ATGTAACTTGTGAAAATCCATACTCTGATACATTTGATTCTGTATCATGTTATATCCCAC
CATTTACTCCAATACTCTCTGATAATAGTACTCAATGGGTTAATATTACTGTTGATGGTC
AAACAAATTCATTTTTTATCTTTAATTATAATTTCACCAAAGCAATTAGTTTTGAAGTTG
AAAAAGATAGTATGTCAAGTTATTATAAATGGTTGATACCGGTAGTAATAATTGGTGTAT
TAGTTATTGTATTAGCAGTAGTTTATTCTGTATATATGTTTAAGAAATTCCAAAGATTAA
AAAAGATAAAAGAAATGATGAATCCAAAACCCCCAACAAATCAACCACAAAATAATGCAT
TTACTCCATCAACACCATCTCTACAAAATTTTTAAACTGGGATATATATATATGTAAAAA
CAATCATAAAAAAATAAAAAAAGTAAATAAACAATTCGTTTTTAA
Length of 3' end seq. 765
Connected seq. ID CHI219P
Connected seq. 
>CHI219P.Seq
GAAAAAAGAAAAATTATTATTTGGAATTATTTTAATATTTTTAATTAGTTATATAAATTT
TATTAAATCATGTGAAGTTACTGGTCAAATATTAAAATGTTCACAATCTTCACTAATTTT
AAAATTAATAAATGGTACAAAGGATACAATTATATTGGATAAAAATAATGGTTATAATAT
ATCAAGTTATCCAAATAAAAAATTTCTTTCTGATCAATATATAAATGGTGAAAGTATTAT
ATTTAATCCAGAGATTTCAATAAATCCAATTCCAACAAGTGGTGGTAAAACACCAATGAT
TGGATACTTTTTATTGGATGGATTTGAAAGTGAAAAATTATTATCAGATAGTAATAATGA
TTTTTTTCATTATGATCCTGTAAATGGTAGTACAATAGATTATTTAATTGATTTACCATC
TGGTTGTAAATCATTTAAAATATTCGATTTTCTAAGTACAAAATCATTATCAACAATTAA
ATATTTACAACCAATTTTATCATCTAAAAAACCATATGAATTCGATAATAATGATAACAA
TAATAACAATGGATATATAATTATAAATGGTGAAAACTTTTCTAATGATTCATCATGTGT
AAATATTAAAATTTCATCAACAATTTTTAAAAACTCAATTCCATCACCAAATTCAATTGA
TCCAAATGAAATAATACTTGATTTTAAT----------TACAAGTTTAAATAATCAAACA
GAGTTAACTTGTGTTTTACCTGGTATTTTATCAACAATTGTATTTTCAAATGAATCACAA
TCAAAATATTATGTTACCTCTGGTACACATCATAAAATTAAATTGGTAACATCAAAATAT
TCAATTGAATCGTTTAATCCAAATAATCTACTTTTCTCCTATGATCCTCCAATAGTAAAT
ACAACAACCACCGTTAGTGAAGAAGGTGGTTTAATTCATCTAACTGGTACAAGTTTTAAT
AATGTTGGTTTATTCGTAACAGTTGGTAATGTAACTTGTGAAAATCCATACTCTGATACA
TTTGATTCTGTATCATGTTATATCCCACCATTTACTCCAATACTCTCTGATAATAGTACT
CAATGGGTTAATATTACTGTTGATGGTCAAACAAATTCATTTTTTATCTTTAATTATAAT
TTCACCAAAGCAATTAGTTTTGAAGTTGAAAAAGATAGTATGTCAAGTTATTATAAATGG
TTGATACCGGTAGTAATAATTGGTGTATTAGTTATTGTATTAGCAGTAGTTTATTCTGTA
TATATGTTTAAGAAATTCCAAAGATTAAAAAAGATAAAAGAAATGATGAATCCAAAACCC
CCAACAAATCAACCACAAAATAATGCATTTACTCCATCAACACCATCTCTACAAAATTTT
TAAACTGGGATATATATATATGTAAAAACAATCATAAAAAAATAAAAAAAGTAAATAAAC
AATTCGTTTTTAA
Length of connected seq. 1443
Full length Seq ID -
Full length Seq. -
Length of full length seq. -