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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI439
Library CH
(Link to library)
Clone ID CHI439
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15080-1
Original site URL
Representative seq. ID CHI439P
(Link to Original site)
Representative DNA sequence 
>CHI439 (CHI439Q) /CSM/CH/CHI4-B/CHI439Q.Seq.d/
GTGAATNATTGTATTTGCGCCAATTAGAACAGGAGAAGAAGGTGAAAAAATACCAATAAT
ACCGATCAATGCAGCATTGAGCGAATCTATAGTATTTTCACCAATTCCACCACCACCATC
AACCACAGATAATACCACCAACACCACTACTACAACAATAGAAACAACGGCAACAGATAA
CACAAACGATACAGAAGAAAAACAAGAAAATATTGAAAATAATAATAATAATAATAATTC
ATCAATATCATCACCAAATAGTATAGATGGAGCAAATAAAAAAGATTCAATTGAATTAGA
AGAAGATAAAGAACATTCAATAAAGAGAAAAGATGGTAGTTTAGGTGATGTTGTAGATAA
TGAAAAGATTATACCAAACTCATTGGATTCAGATGCACCAGAGGAAACATCAAATTTAAA
TAAAAAATCTGAAATTAATATAAAACAAGTTTTAAAGAATCCATCATTCGATGCTACAAA
TGATAATCATAATCCACAAGAAGTTGATAACACTGATAACCCTGATAAACCAACAACACC
ACGCCAAACTACCACCACCACAACTACCACAACTACXXXXXXXXXXGTTTGTACAGAGTG
AAACCACATTCAGGCAGACAGGTTAGATTTGTTATCATGGGTAATCTTTTCCCAACAAAG
AAAAAGATTCACGAACGTTATGATCTCAAGGGCAGTGTCGTGGGTAGGGAGGCTTCGGTC
GATGAGAAGAAATCTGATTCTGTCACCTTTAAAGACATAGATTTCAGAAATAGAAAACAA
AAGATTTTTTTAGGTCCTGGAAAGAAACAATCTTTTATCGATCAAATTAAAAGAGATTGC
AAGTTATTACAATCATTAAATATTATGGATTATTCATTATTAATTGGTATACATTATCCA
CATCGTGAAAATGAACCACCTTCACCATCTTTATTACGTTCAACTTTGGAAGATAGTTCA
GATTTTGAATCACCATCAATGGAACAATCTTCTGCTGGTCAACAACAACAACAACGTGGT
AGTGGTAATTATGACAATAGTGGTGCTGGTAGAGATTCCACTACTGGTGGTGCTGCCCCT
AAAGAAAATGATGAAATTTATATCTCTGCTTTTCAACAAGATGAAGGTGGTATTAAATCT
CAAGGTGGTGATACTGAAGAACACTATTTCCTTGGTATCATTGATATTTTAATGTTGTAT
AGTTTACGTAAAAAGGTTGAACATACCTATAAAACCCTTAAATTTGGTGCAAAACAAGAA
ATTTCTTCTGTTTCTCCTGAGAATACTCGAAAGATTCCAAGAATTTTTATCAACAATTAT
CGNAATAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
*XIVFAPIRTGEEGEKIPIIPINAALSESIVFSPIPPPPSTTDNTTNTTTTTIETTATDN
TNDTEEKQENIENNNNNNNSSISSPNSIDGANKKDSIELEEDKEHSIKRKDGSLGDVVDN
EKIIPNSLDSDAPEETSNLNKKSEINIKQVLKNPSFDATNDNHNPQEVDNTDNPDKPTTP
RQTTTTTTTTT---

---LYRVKPHSGRQVRFVIMGNLFPTKKKIHERYDLKGSVVGREASVDEKKSDSVTFKDI
DFRNRKQKIFLGPGKKQSFIDQIKRDCKLLQSLNIMDYSLLIGIHYPHRENEPPSPSLLR
STLEDSSDFESPSMEQSSAGQQQQQRGSGNYDNSGAGRDSTTGGAAPKENDEIYISAFQQ
DEGGIKSQGGDTEEHYFLGIIDILMLYSLRKKVEHTYKTLKFGAKQEISSVSPENTRKIP
RIFINNYRNN
Translated Amino Acid sequence (All Frames) 
Frame A:
vnxcican*nrrrr*kntnntdqcsieriysiftnstttinhr*yhqhhyynnrnngnr*
hkryrrktrky*k******finiitk*yrwsk*krfn*irrr*rtfnkekrw*fr*ccr*
*kdytkligfrctrgnikfk*ki*n*yktsfkesiircyk**s*strs**h**p**tnnt
tpnyhhhnyhny---

---vcte*nhiqadrldllswvifsqqrkrftnvmisravswvgrlrsmrrnlilsplkt
*iseienkrff*vlernnllsiklkeiasyynh*ilwiihy*lvyiihivkmnhlhhlyy
vqlwkivqilnhhqwnnlllvnnnnnvvvvimtivvlveipllvvlplkkmmkfisllfn
kmkvvlnlkvvilkntislvslif*ccivyvkrlnipikplnlvqnkkfllfllrilerf
qeflstiixii

Frame B:
*XIVFAPIRTGEEGEKIPIIPINAALSESIVFSPIPPPPSTTDNTTNTTTTTIETTATDN
TNDTEEKQENIENNNNNNNSSISSPNSIDGANKKDSIELEEDKEHSIKRKDGSLGDVVDN
EKIIPNSLDSDAPEETSNLNKKSEINIKQVLKNPSFDATNDNHNPQEVDNTDNPDKPTTP
RQTTTTTTTTT---

---fvqsettfrqtg*icyhg*sfpnkekdsrtl*sqgqcrg*ggfgr*eei*fchl*rh
rfqk*ktkdffrswketifyrsn*krlqvitiikyyglfiinwytlsts*k*ttftifit
fnfgr*frf*itingtifcwstttttw*w*l*q*wcw*rfhywwccp*rk**nlylcfst
r*rwy*isrw*y*rtlfpwyh*yfnvv*ft*kg*tyl*np*iwcktrnffcfs*eyskds
knfyqqlsx**

Frame C:
exlylrqleqekkvkkyq*yrsmqh*anl*yfhqfhhhhqpqiipptpllqq*kqrqqit
qtiqkknkkilkiiiiiiihqyhhqiv*meqikkiqln*kkikniq*rekmvv*vml*im
krlyqthwiqmhqrkhqi*iknlkli*nkf*rihhsmlqmiiiihkklitlitlinqqhh
aklpppqlpql---

---LYRVKPHSGRQVRFVIMGNLFPTKKKIHERYDLKGSVVGREASVDEKKSDSVTFKDI
DFRNRKQKIFLGPGKKQSFIDQIKRDCKLLQSLNIMDYSLLIGIHYPHRENEPPSPSLLR
STLEDSSDFESPSMEQSSAGQQQQQRGSGNYDNSGAGRDSTTGGAAPKENDEIYISAFQQ
DEGGIKSQGGDTEEHYFLGIIDILMLYSLRKKVEHTYKTLKFGAKQEISSVSPENTRKIP
RIFINNYRNN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI439 (CHI439Q) /CSM/CH/CHI4-B/CHI439Q.Seq.d/                       2060   0.0
SFA226 (SFA226Q) /CSM/SF/SFA2-B/SFA226Q.Seq.d/                       1094   0.0
SLK612 (SLK612Q) /CSM/SL/SLK6-A/SLK612Q.Seq.d/                        886   0.0
FCL-AC08 (FCL-AC08Q) /CSM/FCL/FCL-AC/FCL-AC08Q.Seq.d/                  88   4e-16
VSE576 (VSE576Q) /CSM/VS/VSE5-D/VSE576Q.Seq.d/                         72   2e-11
SSM187 (SSM187Q) /CSM/SS/SSM1-D/SSM187Q.Seq.d/                         50   9e-05
SHF764 (SHF764Q) /CSM/SH/SHF7-C/SHF764Q.Seq.d/                         50   9e-05
FC-AR24 (FC-AR24Q) /CSM/FC/FC-AR/FC-AR24Q.Seq.d/                       50   9e-05
CHO284 (CHO284Q) /CSM/CH/CHO2-D/CHO284Q.Seq.d/                         50   9e-05
VFK757 (VFK757Q) /CSM/VF/VFK7-C/VFK757Q.Seq.d/                         42   0.022
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   4e-09  16
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    36   4e-09  17
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   1e-07  15
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   4e-07  20
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    42   2e-06  12
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    40   4e-06  12
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    40   6e-06  15
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    40   9e-06  14
CP000013|CP000013.1 Borrelia garinii PBi, complete genome.         38   1e-05  24
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    38   2e-05  31
dna update 2004.12. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK025708_1(AK025708|pid:none) Homo sapiens cDNA: FLJ22055 fis, c...   133   1e-29
AK297243_1(AK297243|pid:none) Homo sapiens cDNA FLJ60683 complet...   133   1e-29
AK302254_1(AK302254|pid:none) Homo sapiens cDNA FLJ52923 complet...   133   1e-29
AY335722_1(AY335722|pid:none) Synthetic construct Homo sapiens p...   133   1e-29
AK125526_1(AK125526|pid:none) Homo sapiens cDNA FLJ43538 fis, cl...   133   1e-29
(Q8TBX8) RecName: Full=Phosphatidylinositol-5-phosphate 4-kinase...   133   2e-29
BC045883_1(BC045883|pid:none) Danio rerio phosphatidylinositol-4...   132   3e-29
(Q6IQE1) RecName: Full=Phosphatidylinositol-5-phosphate 4-kinase...   131   5e-29
(O88370) RecName: Full=Phosphatidylinositol-5-phosphate 4-kinase...   129   2e-28
AM270251_67(AM270251|pid:none) Aspergillus niger contig An11c034...   128   4e-28
protein update 2009. 4. 2
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.03
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHI439 is cyt
5' end seq. ID CHI439F
5' end seq. 
>CHI439F.Seq
GTGAATNATTGTATTTGCGCCAATTAGAACAGGAGAAGAAGGTGAAAAAATACCAATAAT
ACCGATCAATGCAGCATTGAGCGAATCTATAGTATTTTCACCAATTCCACCACCACCATC
AACCACAGATAATACCACCAACACCACTACTACAACAATAGAAACAACGGCAACAGATAA
CACAAACGATACAGAAGAAAAACAAGAAAATATTGAAAATAATAATAATAATAATAATTC
ATCAATATCATCACCAAATAGTATAGATGGAGCAAATAAAAAAGATTCAATTGAATTAGA
AGAAGATAAAGAACATTCAATAAAGAGAAAAGATGGTAGTTTAGGTGATGTTGTAGATAA
TGAAAAGATTATACCAAACTCATTGGATTCAGATGCACCAGAGGAAACATCAAATTTAAA
TAAAAAATCTGAAATTAATATAAAACAAGTTTTAAAGAATCCATCATTCGATGCTACAAA
TGATAATCATAATCCACAAGAAGTTGATAACACTGATAACCCTGATAAACCAACAACACC
ACGCCAAACTACCACCACCACAACTACCACAACTACNNNNNNNNNN
Length of 5' end seq. 586
3' end seq. ID CHI439Z
3' end seq. 
>CHI439Z.Seq
NNNNNNNNNNGTTTGTACAGAGTGAAACCACATTCAGGCAGACAGGTTAGATTTGTTATC
ATGGGTAATCTTTTCCCAACAAAGAAAAAGATTCACGAACGTTATGATCTCAAGGGCAGT
GTCGTGGGTAGGGAGGCTTCGGTCGATGAGAAGAAATCTGATTCTGTCACCTTTAAAGAC
ATAGATTTCAGAAATAGAAAACAAAAGATTTTTTTAGGTCCTGGAAAGAAACAATCTTTT
ATCGATCAAATTAAAAGAGATTGCAAGTTATTACAATCATTAAATATTATGGATTATTCA
TTATTAATTGGTATACATTATCCACATCGTGAAAATGAACCACCTTCACCATCTTTATTA
CGTTCAACTTTGGAAGATAGTTCAGATTTTGAATCACCATCAATGGAACAATCTTCTGCT
GGTCAACAACAACAACAACGTGGTAGTGGTAATTATGACAATAGTGGTGCTGGTAGAGAT
TCCACTACTGGTGGTGCTGCCCCTAAAGAAAATGATGAAATTTATATCTCTGCTTTTCAA
CAAGATGAAGGTGGTATTAAATCTCAAGGTGGTGATACTGAAGAACACTATTTCCTTGGT
ATCATTGATATTTTAATGTTGTATAGTTTACGTAAAAAGGTTGAACATACCTATAAAACC
CTTAAATTTGGTGCAAAACAAGAAATTTCTTCTGTTTCTCCTGAGAATACTCGAAAGATT
CCAAGAATTTTTATCAACAATTATCGNAATAATAA
Length of 3' end seq. 755
Connected seq. ID CHI439P
Connected seq. 
>CHI439P.Seq
GTGAATNATTGTATTTGCGCCAATTAGAACAGGAGAAGAAGGTGAAAAAATACCAATAAT
ACCGATCAATGCAGCATTGAGCGAATCTATAGTATTTTCACCAATTCCACCACCACCATC
AACCACAGATAATACCACCAACACCACTACTACAACAATAGAAACAACGGCAACAGATAA
CACAAACGATACAGAAGAAAAACAAGAAAATATTGAAAATAATAATAATAATAATAATTC
ATCAATATCATCACCAAATAGTATAGATGGAGCAAATAAAAAAGATTCAATTGAATTAGA
AGAAGATAAAGAACATTCAATAAAGAGAAAAGATGGTAGTTTAGGTGATGTTGTAGATAA
TGAAAAGATTATACCAAACTCATTGGATTCAGATGCACCAGAGGAAACATCAAATTTAAA
TAAAAAATCTGAAATTAATATAAAACAAGTTTTAAAGAATCCATCATTCGATGCTACAAA
TGATAATCATAATCCACAAGAAGTTGATAACACTGATAACCCTGATAAACCAACAACACC
ACGCCAAACTACCACCACCACAACTACCACAACTAC----------GTTTGTACAGAGTG
AAACCACATTCAGGCAGACAGGTTAGATTTGTTATCATGGGTAATCTTTTCCCAACAAAG
AAAAAGATTCACGAACGTTATGATCTCAAGGGCAGTGTCGTGGGTAGGGAGGCTTCGGTC
GATGAGAAGAAATCTGATTCTGTCACCTTTAAAGACATAGATTTCAGAAATAGAAAACAA
AAGATTTTTTTAGGTCCTGGAAAGAAACAATCTTTTATCGATCAAATTAAAAGAGATTGC
AAGTTATTACAATCATTAAATATTATGGATTATTCATTATTAATTGGTATACATTATCCA
CATCGTGAAAATGAACCACCTTCACCATCTTTATTACGTTCAACTTTGGAAGATAGTTCA
GATTTTGAATCACCATCAATGGAACAATCTTCTGCTGGTCAACAACAACAACAACGTGGT
AGTGGTAATTATGACAATAGTGGTGCTGGTAGAGATTCCACTACTGGTGGTGCTGCCCCT
AAAGAAAATGATGAAATTTATATCTCTGCTTTTCAACAAGATGAAGGTGGTATTAAATCT
CAAGGTGGTGATACTGAAGAACACTATTTCCTTGGTATCATTGATATTTTAATGTTGTAT
AGTTTACGTAAAAAGGTTGAACATACCTATAAAACCCTTAAATTTGGTGCAAAACAAGAA
ATTTCTTCTGTTTCTCCTGAGAATACTCGAAAGATTCCAAGAATTTTTATCAACAATTAT
CGNAATAATAA
Length of connected seq. 1321
Full length Seq ID -
Full length Seq. -
Length of full length seq. -