>CHJ833 (CHJ833Q) /CSM/CH/CHJ8-B/CHJ833Q.Seq.d/
AACATTAACGATAATAATATTACTCTTAATAATAATAAAAATACATTTATATTGTTAACA
CAACTAAGAAAATCTTTCTTATAACACAAAAAAACATATCCCTATTAAAATTATTTTTTA
TTAATAAAAACAATAATAATAAATTAAAATAAATTTTTGATATAGATACAAATATTTTAA
AATTCAAAACAAAAACAATAATAAAAACAAAATAATAAAAGAAATAAAGCAAATACATCA
AATTAAAATTTGATTTAAAAAGAAAAAAAAAAXXXXXXXXXX

h*r**yys****KYIYIVNTTKKIFLITQKNISLLKLFFINKNNNNKLK*ifdidtnilk
fktktiiktk**kk*skyiklkfdlkrkk---

Frame A:
nindnnitlnnnkntfilltqlrksfl*hkktypy*nyflliktiiin*nkfli*iqif*
nskqkq**kqnnkrnkantsn*nli*kekk---


Frame B:
tltiiillliiikihlyc*hn*enlsyntkkhipikiify**kq***ikinf*yrykyfk
iqnknnnknkiikeikqihqiki*fkkkkk---


Frame C:
h*r**yys****KYIYIVNTTKKIFLITQKNISLLKLFFINKNNNNKLK*ifdidtnilk
fktktiiktk**kk*skyiklkfdlkrkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK810 (SHK810Q) /CSM/SH/SHK8-A/SHK810Q.Seq.d/                        172   2e-42
SHI845 (SHI845Q) /CSM/SH/SHI8-B/SHI845Q.Seq.d/                        172   2e-42
CHJ833 (CHJ833Q) /CSM/CH/CHJ8-B/CHJ833Q.Seq.d/                        172   2e-42
SFJ252 (SFJ252Q) /CSM/SF/SFJ2-C/SFJ252Q.Seq.d/                         44   0.001
SFH833 (SFH833Q) /CSM/SF/SFH8-B/SFH833Q.Seq.d/                         44   0.001
FC-AF03 (FC-AF03Q) /CSM/FC/FC-AF/FC-AF03Q.Seq.d/                       44   0.001
VSJ759 (VSJ759Q) /CSM/VS/VSJ7-C/VSJ759Q.Seq.d/                         42   0.004
VHP162 (VHP162Q) /CSM/VH/VHP1-C/VHP162Q.Seq.d/                         42   0.004
VHL305 (VHL305Q) /CSM/VH/VHL3-A/VHL305Q.Seq.d/                         42   0.004
VHJ711 (VHJ711Q) /CSM/VH/VHJ7-A/VHJ711Q.Seq.d/                         42   0.004

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    40   1e-04  4
BX323818|BX323818.8 Zebrafish DNA sequence from clone DKEY-48H7 in linkage group 4  Contains the gene for a novel protein similar to vertebrate  phosphodiesterase 3A, cGMP-inhibited (PDE3A), a novel gene and two  CpG islands.    40   2e-04  4
CR388127|CR388127.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50   5e-04  3
BX154986|BX154986.1 Danio rerio genomic clone DKEY-114G23, genomic survey sequence.    42   0.001  2
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    42   0.002  6
CR932399|CR932399.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-207O9.    42   0.003  4
BX163374|BX163374.1 Danio rerio genomic clone DKEY-166B15, genomic survey sequence.    44   0.003  2
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    34   0.003  6
BX897719|BX897719.8 Zebrafish DNA sequence from clone CH211-199I23 in linkage group 13.    38   0.004  2
BX927393|BX927393.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-231B2.    50   0.005  5

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 102,217,547

 psg: 0.72  gvh: 0.19  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHJ833 is nuc

>CHJ833F.Seq
AACATTAACGATAATAATATTACTCTTAATAATAATAAAAATACATTTATATTGTTAACA
CAACTAAGAAAATCTTTCTTATAACACAAAAAAACATATCCCTATTAAAATTATTTTTTA
TTAATAAAAACAATAATAATAAATTAAAATAAATTTTTGATATAGATACAAATATTTTAA
AATTCAAAACAAAAACAATAATAAAAACAAAATAATAAAAGAAATAAAGCAAATACATCA
AATTAAAATTTGATTTAAAAAGAAAAAAAAAANNNNNNNNNN