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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHK411
Library CH
(Link to library)
Clone ID CHK411
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16372-1
Original site URL
Representative seq. ID CHK411P
(Link to Original site)
Representative DNA sequence 
>CHK411 (CHK411Q) /CSM/CH/CHK4-A/CHK411Q.Seq.d/
ATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAATTTATTG
AAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATGAGTAAA
TATTTTTCCTTACAATAACACAATCATTTTTTAAATTCTGACCAATAAAAAACAGAAACA
GAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATAGAAATA
TATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCTGGGAAG
AAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTAAATATT
ATAATATGGGATTGTATTCTTTGGTATCTGATGCAGTAGATACGTGTGACATTTGCCAAC
GAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACT
CAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACG
ATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTAC
AACCGTACGXXXXXXXXXXCCNACAGCGCCAAATTTAATGGATTGTTTGAGAAAGGATAT
GAATTTAAAAGCNATAGTACCACCAATNCCTCAAGTGCAAATAATACCATCGTATACTAT
ACCACAATCTGGTAGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCCTCATAA
GATANCAATTGTTAATAAACCTCCTTTAAAATCACATTCTAAACCATCCAAATCACCTCT
CAAATCACCATCCATTTCACCTTCCAATTCACCNTTTAAATCACCATTTAAATCACCTTN
CAAATCACCATTTAAATCACCTTCNAAATCNCCATCCATTTCACCTTNCAATTCACCATT
TAAATCACCTTCCAATTCACCTTTTAAATCACCA
sequence update 2002.10.25
Translated Amino Acid sequence 
fpkmkqdkineiinylkfiednnfentkhknykflhde*iffltitqsffkf*PIKNRNR
KEKLFRIEKKVMNCGGDRNISKEVCLEVINDYRMVSLWEEMHKGHIGRDATYGNYKTKYY
NMGLYSLVSDAVDTCDICQRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYD
DDNEKILTKLDDLIQYDSVQPY---

---PTAPNLMDCLRKDMNLKAIVPPXPQVQIIPSYTIPQSGSGIVTTVKRXRGRPHKIXI
VNKPPLKSHSKPSKSPLKSPSISPSNSPFKSPFKSPXKSPFKSPSKSPSISPXNSPFKSP
SNSPFKSP
Translated Amino Acid sequence (All Frames) 
Frame A:
ifpk*nkik*mkl*ii*nllkiiilkilnikiinfymmskyfslq*hnhflnsdq*ktet
ekknylelkkks*ivaeieiyqkkcv*k*lmiiewyhsgkkcikvi*eemqpmgttrlni
iiwdcilwylmq*irvtfaneie*kv*qrillql*iprntqdwfmi*hqlkvnikkklht
mmimkry*ln*milsnmtlynrt---

---PTAPNLMDCLRKDMNLKAIVPPXPQVQIIPSYTIPQSGSGIVTTVKRXRGRPHKIXI
VNKPPLKSHSKPSKSPLKSPSISPSNSPFKSPFKSPXKSPFKSPSKSPSISPXNSPFKSP
SNSPFKSP

Frame B:
fsqnetr*nk*nyklfkiy*r**f*ky*t*kl*ift**vnifpynntiif*iltnkkqkq
krkii*n*kkshelwrr*kyikrsvfrsn**l*ngitlgrna*rsyrkrcnlwelqd*il
*ygivffgi*csryv*hlptk*nkrynkgfcsncryrgilkigl*fnin*r*t*rksyir
****kdtn*tr*sypi*lcttv---

---xqrqi*wiv*eri*i*kx*yhqxlkck*yhrilyhnlvvv**qllnvseavlirxql
linll*nhilnhpnhlsnhhpfhlpihxlnhhlnhlxnhhlnhlxnxhpfhlxihhlnhl
pihllnh

Frame C:
fpkmkqdkineiinylkfiednnfentkhknykflhde*iffltitqsffkf*PIKNRNR
KEKLFRIEKKVMNCGGDRNISKEVCLEVINDYRMVSLWEEMHKGHIGRDATYGNYKTKYY
NMGLYSLVSDAVDTCDICQRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYD
DDNEKILTKLDDLIQYDSVQPY---

---xsakfnglfekgyefksxsttnxssanntivyyttiw*wysnnc*txqrpss*dxnc
**tsfkitf*tiqitsqitihftfqftx*iti*itxqiti*itfxixihftxqfti*itf
qftf*it
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHK411 (CHK411Q) /CSM/CH/CHK4-A/CHK411Q.Seq.d/                       1431   0.0
VSH582 (VSH582Q) /CSM/VS/VSH5-D/VSH582Q.Seq.d/                        779   0.0
VHQ196 (VHQ196Q) /CSM/VH/VHQ1-D/VHQ196Q.Seq.d/                        779   0.0
VHM252 (VHM252Q) /CSM/VH/VHM2-C/VHM252Q.Seq.d/                        779   0.0
VHK362 (VHK362Q) /CSM/VH/VHK3-C/VHK362Q.Seq.d/                        779   0.0
VHJ234 (VHJ234Q) /CSM/VH/VHJ2-B/VHJ234Q.Seq.d/                        779   0.0
VHG545 (VHG545Q) /CSM/VH/VHG5-B/VHG545Q.Seq.d/                        779   0.0
VHB568 (VHB568Q) /CSM/VH/VHB5-C/VHB568Q.Seq.d/                        779   0.0
VHA379 (VHA379Q) /CSM/VH/VHA3-D/VHA379Q.Seq.d/                        779   0.0
CHS453 (CHS453Q) /CSM/CH/CHS4-C/CHS453Q.Seq.d/                        779   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U57081|U57081.1 Dictyostelium discoideum Tdd-4 transposable element encodes putative transposition inhibitor and putative transposase, complete cds.   668   0.0    5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   438   0.0    11
AF298206|AF298206.2 Dictyostelium discoideum transposon Tdd-5, complete sequence.    52   6e-10  3
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    60   8e-05  12
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    36   6e-04  12
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    32   0.001  19
CR932000|CR932000.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40   0.014  5
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    36   0.045  11
AL682152|AL682152.2 Xenopus tropicalis EST, clone TGas060h18 5'.    32   0.054  4
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    34   0.079  8
dna update 2005. 2. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   360   3e-98
U57081_1(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   360   3e-98
AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro...    39   0.34
AC096687_18(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJ...    38   0.45
AJ893357_41(AJ893357|pid:none) Phytophthora infestans, clone PI-...    38   0.59
AL929297_2(AL929297|pid:none) Zebrafish DNA sequence from clone ...    37   0.76
AP008212_1155(AP008212|pid:none) Oryza sativa (japonica cultivar...    37   1.00
S52564(S52564)hypothetical protein 2 (clone Db314) - fruit fly (...    37   1.3
DQ645742_1(DQ645742|pid:none) Phytophthora sojae transposon Gyps...    36   1.7
EU697462_1(EU697462|pid:none) Podospora anserina retrotransposon...    36   1.7
protein update 2009. 4. 7
PSORT 

 psg: 0.49  gvh: 0.24  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHK411 is nuc
5' end seq. ID CHK411F
5' end seq. 
>CHK411F.Seq
ATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAATTTATTG
AAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATGAGTAAA
TATTTTTCCTTACAATAACACAATCATTTTTTAAATTCTGACCAATAAAAAACAGAAACA
GAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATAGAAATA
TATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCTGGGAAG
AAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTAAATATT
ATAATATGGGATTGTATTCTTTGGTATCTGATGCAGTAGATACGTGTGACATTTGCCAAC
GAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACT
CAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACG
ATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTAC
AACCGTACGNNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID CHK411Z
3' end seq. 
>CHK411Z.Seq
NNNNNNNNNNCCNACAGCGCCAAATTTAATGGATTGTTTGAGAAAGGATATGAATTTAAA
AGCNATAGTACCACCAATNCCTCAAGTGCAAATAATACCATCGTATACTATACCACAATC
TGGTAGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCCTCATAAGATANCAAT
TGTTAATAAACCTCCTTTAAAATCACATTCTAAACCATCCAAATCACCTCTCAAATCACC
ATCCATTTCACCTTCCAATTCACCNTTTAAATCACCATTTAAATCACCTTNCAAATCACC
ATTTAAATCACCTTCNAAATCNCCATCCATTTCACCTTNCAATTCACCATTTAAATCACC
TTCCAATTCACCTTTTAAATCACCA
Length of 3' end seq. 385
Connected seq. ID CHK411P
Connected seq. 
>CHK411P.Seq
ATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAATTTATTG
AAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATGAGTAAA
TATTTTTCCTTACAATAACACAATCATTTTTTAAATTCTGACCAATAAAAAACAGAAACA
GAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATAGAAATA
TATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCTGGGAAG
AAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTAAATATT
ATAATATGGGATTGTATTCTTTGGTATCTGATGCAGTAGATACGTGTGACATTTGCCAAC
GAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACT
CAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACG
ATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTAC
AACCGTACG----------CCNACAGCGCCAAATTTAATGGATTGTTTGAGAAAGGATAT
GAATTTAAAAGCNATAGTACCACCAATNCCTCAAGTGCAAATAATACCATCGTATACTAT
ACCACAATCTGGTAGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCCTCATAA
GATANCAATTGTTAATAAACCTCCTTTAAAATCACATTCTAAACCATCCAAATCACCTCT
CAAATCACCATCCATTTCACCTTCCAATTCACCNTTTAAATCACCATTTAAATCACCTTN
CAAATCACCATTTAAATCACCTTCNAAATCNCCATCCATTTCACCTTNCAATTCACCATT
TAAATCACCTTCCAATTCACCTTTTAAATCACCA
Length of connected seq. 984
Full length Seq ID -
Full length Seq. -
Length of full length seq. -