>CHL507 (CHL507Q) /CSM/CH/CHL5-A/CHL507Q.Seq.d/
AATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATTTCA
TATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAAXXXXXXXX
XX

iip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKK---

Frame A:
nyplk**q*nrflhlflfisylfllekkekkekkkkk---


Frame B:
iip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKK---


Frame C:
lslkiitik*iftfifiyfififvgkkrkkrkkekk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL855 (SHL855Q) /CSM/SH/SHL8-C/SHL855Q.Seq.d/                         64   5e-10
SHL847 (SHL847Q) /CSM/SH/SHL8-B/SHL847Q.Seq.d/                         64   5e-10
SHL842 (SHL842Q) /CSM/SH/SHL8-B/SHL842Q.Seq.d/                         64   5e-10
SHL819 (SHL819Q) /CSM/SH/SHL8-A/SHL819Q.Seq.d/                         64   5e-10
SHL791 (SHL791Q) /CSM/SH/SHL7-D/SHL791Q.Seq.d/                         64   5e-10
SHL783 (SHL783Q) /CSM/SH/SHL7-D/SHL783Q.Seq.d/                         64   5e-10
SHL780 (SHL780Q) /CSM/SH/SHL7-D/SHL780Q.Seq.d/                         64   5e-10
SHL776 (SHL776Q) /CSM/SH/SHL7-D/SHL776Q.Seq.d/                         64   5e-10
SHL769 (SHL769Q) /CSM/SH/SHL7-C/SHL769Q.Seq.d/                         64   5e-10
SHL746 (SHL746Q) /CSM/SH/SHL7-B/SHL746Q.Seq.d/                         64   5e-10

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BZ389324|BZ389324.1 EINAK35TR EI_10_12_KB Entamoeba invadens genomic clone EINAK35,genomic survey sequence.    40   5e-04  2
BG346574|BG346574.1 daa38d12.x1 NICHD XGC Lu1 Xenopus laevis cDNA clone IMAGE:4058543 3', mRNA sequence.    32   0.002  3
AL391158|AL391158.5 Human chromosome 14 DNA sequence BAC R-560O13 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    44   0.003  4
BG346646|BG346646.1 daa39d04.x1 NICHD XGC Lu1 Xenopus laevis cDNA clone IMAGE:4058550 3', mRNA sequence.    32   0.004  3
CR385071|CR385071.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-245B7.    50   0.008  1
CR936281|CR936281.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50   0.008  1
AZ230528|AZ230528.1 RPCI-23-69J21.TV RPCI-23 Mus musculus genomic clone RPCI-23-69J21, genomic survey sequence.    42   0.009  2
BZ399414|BZ399414.1 EINAU77TR EI_10_12_KB Entamoeba invadens genomic clone EINAU77, DNA sequence.    40   0.011  2
BZ395298|BZ395298.1 EINAO59TF EI_10_12_KB Entamoeba invadens genomic clone EINAO59, DNA sequence.    40   0.014  2
BZ401222|BZ401222.1 EINCK77TR EI_10_12_KB Entamoeba invadens genomic clone EINCK77, DNA sequence.    40   0.015  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 68,193,591

 psg: 0.91  gvh: 0.26  alm: 0.47  top: 0.43  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.57  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHL507 is nuc

>CHL507F.Seq
AATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATTTCA
TATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAANNNNNNNN
NN