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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL605
Library CH
(Link to library)
Clone ID CHL605
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15639-1
Original site URL
Representative seq. ID CHL605P
(Link to Original site)
Representative DNA sequence 
>CHL605 (CHL605Q) /CSM/CH/CHL6-A/CHL605Q.Seq.d/
TGGCCTACTGGAAAAATTTTAAATAAAAATATTAACAAATATTATTTAATTTATTTATTT
TTTATATATATATAAAATATAGATTTATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAA
AAAAAAATGTCAAATAGAAAAANANAATTTATTGAATATATTGATAGTANAAAACCAGTT
GAANCANATATTGATATTAGNGATAAAGCANATAGATTAACAGATATTTATGATAGNGAT
ACATATGGATTAAATGCAATGAGGGANACATTACCATCACATTGTTATAAAAAAATTCGN
GAAGTAATGCAAACAGGTAGNGXXXXXXXXXXCGTACTTCACCCATTTGCTTTCACTGGT
AATAAATTTGAATTCCGTGCTGTTGGTTCTTCACAAGTTGTAAATTTCCCTTGTATCGTA
TTGAATACCATTGTTGCTGAATCATTACGTTTCATTCGTGAAGAGATTCTCAGAGAGATG
AAAGTTAGTAGTAGACAAACTGCATTCAATAAAATCATTAAAGATACATTGATTCAACAT
GTTCGTGTTGTTTTCAATGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATCT
AGAGGTTTAGCAAATTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAG
AATATTAAACTCTTTTCTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAA
GAGATTCTCTTTGAAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGAT
TTAGTTTCAACTTTGGTACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCT
GTAAACTCTATAATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAA
TATTCTCATCTCTCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAA
CTTTTGGCTCTCATTAAACAAACTAAAGATTTCAATTCTGAACATTCACTCGCAACTTTC
CTCAATCAATCTGTAATTCCACAAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAA
GGTATTGTGAAGATAAATCTGGCCAGTTCCAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
wptgkilnkninkyyliylffiyi*NIDLFFFKKKKKKKKKKMSNRKXXFIEYIDSXKPV
EXXIDIXDKAXRLTDIYDXDTYGLNAMRXTLPSHCYKKIREVMQTGX---

---VLHPFAFTGNKFEFRAVGSSQVVNFPCIVLNTIVAESLRFIREEILREMKVSSRQTA
FNKIIKDTLIQHVRVVFNGDGYSGDWKELAKSRGLANLPSTPEALTNINSEKNIKLFSES
NILSPVELESRQEILFEIYNKSIKIEANSLYDLVSTLVLPACFAHQKNIAESVNSIMPFI
QSQKSFSQPNHQYSHLSEVVESVNLLIEANQKLLALIKQTKDFNSEHSLATFLNQSVIPQ
MNEVRKFSDHLEGIVKINLASSK
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgkilnkninkyyliylffiyi*NIDLFFFKKKKKKKKKKMSNRKXXFIEYIDSXKPV
EXXIDIXDKAXRLTDIYDXDTYGLNAMRXTLPSHCYKKIREVMQTGX---

---rtspicfhw**i*ipccwfftsckfplyrieyhcc*iitfhs*rdsqrdes***tnc
iq*nh*ryidstcsccfqw*wl*w*lertrqi*rfskftidsrgfnky*l*key*tlf*k
*yslts*igitsrdsl*nl**in*nrsklfi*fsfnfgtsslfcsskeyc*icklynaih
skskifqstkssifssl*sr*icqsln*s*sktfgsh*tn*rfqf*tftrnfpqsicnst
ne*ss*if*sfrrycedksgqfqn

Frame B:
gllekf*ikiltnii*fiyflyiyki*iyfflkrkrrkrkkkcqiekxnllnilivxnql
xxililxikxid*qifmixihmd*mq*gxhyhhivikkfxk*ckqvx---

---VLHPFAFTGNKFEFRAVGSSQVVNFPCIVLNTIVAESLRFIREEILREMKVSSRQTA
FNKIIKDTLIQHVRVVFNGDGYSGDWKELAKSRGLANLPSTPEALTNINSEKNIKLFSES
NILSPVELESRQEILFEIYNKSIKIEANSLYDLVSTLVLPACFAHQKNIAESVNSIMPFI
QSQKSFSQPNHQYSHLSEVVESVNLLIEANQKLLALIKQTKDFNSEHSLATFLNQSVIPQ
MNEVRKFSDHLEGIVKINLASSK

Frame C:
aywknfk*ky*qilfnlfifyiyikyrfiff*kekeekekknvk*kxxiy*iy**xkts*
xxy*y*x*sx*inryl**xyiwikcnegxititll*knsxsnanr*---

---yfthllslvinlnsvllvlhkl*islvsy*iplllnhyvsfvkrfser*klvvdklh
sikslkih*fnmfvlfsmvmvivvigknspnlev*qiyhrlqrl*qiltlkrilnsflkv
ifshqlnwnhvkrfslkfiinqlkskqtlymi*fqlwyfqlvllikrillnl*tl*chsf
kvknlsvnqiinilislkslnlsis*lkliknfwlslnklkisilnihsqlssinl*fhk
*mkfvnflii*kvl*r*iwpvpk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL605 (CHL605Q) /CSM/CH/CHL6-A/CHL605Q.Seq.d/                       1768   0.0
CHL156 (CHL156Q) /CSM/CH/CHL1-C/CHL156Q.Seq.d/                       1528   0.0
CHG669 (CHG669Q) /CSM/CH/CHG6-C/CHG669Q.Seq.d/                       1515   0.0
CHG548 (CHG548Q) /CSM/CH/CHG5-B/CHG548Q.Seq.d/                       1469   0.0
CHI220 (CHI220Q) /CSM/CH/CHI2-A/CHI220Q.Seq.d/                       1467   0.0
SHA796 (SHA796Q) /CSM/SH/SHA7-D/SHA796Q.Seq.d/                       1459   0.0
CHQ559 (CHQ559Q) /CSM/CH/CHQ5-C/CHQ559Q.Seq.d/                       1457   0.0
CHG671 (CHG671Q) /CSM/CH/CHG6-C/CHG671Q.Seq.d/                       1455   0.0
CHM738 (CHM738Q) /CSM/CH/CHM7-B/CHM738Q.Seq.d/                       1447   0.0
CHN678 (CHN678Q) /CSM/CH/CHN6-D/CHN678Q.Seq.d/                       1445   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    36   0.006  25
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.050  12
AC107128|AC107128.5 Rattus norvegicus clone CH230-133F6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    40   0.12   7
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    40   0.16   11
AC099803|AC099803.1 Homo sapiens chromosome 18 clone RP11-152J5 map 18, LOW-PASS SEQUENCE SAMPLING.    40   0.26   3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   0.31   13
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   0.43   22
AC098759|AC098759.5 Rattus norvegicus clone CH230-167F9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40   0.44   7
AC024927|AC024927.2 Homo sapiens chromosome 3 clone RP11-292P2 map 3, WORKING DRAFT SEQUENCE, 37 unordered pieces.    34   0.59   7
AC069189|AC069189.1 Homo sapiens chromosome 3 clone RP11-579A2 map 3, LOW-PASS SEQUENCE SAMPLING.    42   0.76   5
dna update 2005. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase;          EC=...   484   e-135
CP000359_1193(CP000359|pid:none) Deinococcus geothermalis DSM 11...   157   6e-37
CP000568_1524(CP000568|pid:none) Clostridium thermocellum ATCC 2...   155   3e-36
CP001101_909(CP001101|pid:none) Chlorobium phaeobacteroides BS1,...   152   1e-35
CP000951_239(CP000951|pid:none) Synechococcus sp. PCC 7002, comp...   152   3e-35
AE017285_1252(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...   151   3e-35
BA000022_1934(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,...   149   1e-34
CP000112_102(CP000112|pid:none) Desulfovibrio desulfuricans G20,...   149   1e-34
CP000859_2266(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...   148   3e-34
CT573071_568(CT573071|pid:none) Kuenenia stuttgartiensis genome ...   148   4e-34
protein update 2009. 4. 8
PSORT 

 psg: 0.25  gvh: 0.26  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.05
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for CHL605 is nuc
5' end seq. ID CHL605F
5' end seq. 
>CHL605F.Seq
TGGCCTACTGGAAAAATTTTAAATAAAAATATTAACAAATATTATTTAATTTATTTATTT
TTTATATATATATAAAATATAGATTTATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAA
AAAAAAATGTCAAATAGAAAAANANAATTTATTGAATATATTGATAGTANAAAACCAGTT
GAANCANATATTGATATTAGNGATAAAGCANATAGATTAACAGATATTTATGATAGNGAT
ACATATGGATTAAATGCAATGAGGGANACATTACCATCACATTGTTATAAAAAAATTCGN
GAAGTAATGCAAACAGGTAGNGNNNNNNNNNN
Length of 5' end seq. 332
3' end seq. ID CHL605Z
3' end seq. 
>CHL605Z.Seq
NNNNNNNNNNCGTACTTCACCCATTTGCTTTCACTGGTAATAAATTTGAATTCCGTGCTG
TTGGTTCTTCACAAGTTGTAAATTTCCCTTGTATCGTATTGAATACCATTGTTGCTGAAT
CATTACGTTTCATTCGTGAAGAGATTCTCAGAGAGATGAAAGTTAGTAGTAGACAAACTG
CATTCAATAAAATCATTAAAGATACATTGATTCAACATGTTCGTGTTGTTTTCAATGGTG
ATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCAT
CGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTCTGAAA
GTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATA
ATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGTACTTC
CAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCA
TTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGAAGTCG
TTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTTTGGCTCTCATTAAACAAA
CTAAAGATTTCAATTCTGAACATTCACTCGCAACTTTCCTCAATCAATCTGTAATTCCAC
AAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAAGGTATTGTGAAGATAAATCTGG
CCAGTTCCAAAAT
Length of 3' end seq. 793
Connected seq. ID CHL605P
Connected seq. 
>CHL605P.Seq
TGGCCTACTGGAAAAATTTTAAATAAAAATATTAACAAATATTATTTAATTTATTTATTT
TTTATATATATATAAAATATAGATTTATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAA
AAAAAAATGTCAAATAGAAAAANANAATTTATTGAATATATTGATAGTANAAAACCAGTT
GAANCANATATTGATATTAGNGATAAAGCANATAGATTAACAGATATTTATGATAGNGAT
ACATATGGATTAAATGCAATGAGGGANACATTACCATCACATTGTTATAAAAAAATTCGN
GAAGTAATGCAAACAGGTAGNG----------CGTACTTCACCCATTTGCTTTCACTGGT
AATAAATTTGAATTCCGTGCTGTTGGTTCTTCACAAGTTGTAAATTTCCCTTGTATCGTA
TTGAATACCATTGTTGCTGAATCATTACGTTTCATTCGTGAAGAGATTCTCAGAGAGATG
AAAGTTAGTAGTAGACAAACTGCATTCAATAAAATCATTAAAGATACATTGATTCAACAT
GTTCGTGTTGTTTTCAATGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATCT
AGAGGTTTAGCAAATTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAG
AATATTAAACTCTTTTCTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAA
GAGATTCTCTTTGAAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGAT
TTAGTTTCAACTTTGGTACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCT
GTAAACTCTATAATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAA
TATTCTCATCTCTCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAA
CTTTTGGCTCTCATTAAACAAACTAAAGATTTCAATTCTGAACATTCACTCGCAACTTTC
CTCAATCAATCTGTAATTCCACAAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAA
GGTATTGTGAAGATAAATCTGGCCAGTTCCAAAAT
Length of connected seq. 1105
Full length Seq ID -
Full length Seq. -
Length of full length seq. -