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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM441
Library CH
(Link to library)
Clone ID CHM441
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15718-1
Original site URL
Representative seq. ID CHM441P
(Link to Original site)
Representative DNA sequence 
>CHM441 (CHM441Q) /CSM/CH/CHM4-B/CHM441Q.Seq.d/
TAATTAAAAAATATATATATATTTTTTAAAATTTAAAAAATATATTATAAATAAATAATG
ATGAAATATATATATATTTTATTAATATTTTCTTTATTGTTTTTGAAAATAAATTCACAA
AATACAATTTTGTTGAATGCATTAATTTATGATCAAACTCCATCAAGAAATAATGATTTT
CAAATTCCTTCTCCANGAGGTATTGCAAAAGGGTTAGTAAAATCTAATTTANGTTCTGAT
AATACACCAGXXXXXXXXXXTACTGAATCAACATGTGATGACAATGATGCTTGTACTTCA
GATGTATGTACAGAATATGGTTGTGAGCATTATACATATACTGGTTGTATGAATTGTACT
AATGGAGGTTGTTTCACTACTCCAGATACATGTAATCATTATGGTTGTAATTTCACTGGT
GATGGTAAATGCTTCTTCACTCATTTAGAATGTGATGATAATGACCCATGTACTAAAGAT
CATTGCTTATATTCTGGGGATTGTTATTATGAAAAACTTACCAATTGTACAACCCCAACC
CCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGGTGTTAATGAA
TGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGAAAGATGTTTC
ATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCCTGGTGTAACA
ACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATCAGGTACAGGT
AATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCATGTTATTAAT
GGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGATCTTCATTGT
GAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAAACCAAATATT
AAAGGATGTAAAGATNATTCTTGTTGTAAATATACTCCAACTTGTAGATAATTAATCAAA
ATTTTTAAAATAAATAATATCC
sequence update 2002.10.25
Translated Amino Acid sequence 
*lkniyiffki*kiyyk*IMMKYIYILLIFSLLFLKINSQNTILLNALIYDQTPSRNNDF
QIPSPXGIAKGLVKSNLXSDNTP---

---TESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNFTGDGKC
FFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGVNECDCC
PEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESGTGNPHL
CDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKPNIKGCK
DXSCCKYTPTCR*likifkinni
Translated Amino Acid sequence (All Frames) 
Frame A:
*lkniyiffki*kiyyk*IMMKYIYILLIFSLLFLKINSQNTILLNALIYDQTPSRNNDF
QIPSPXGIAKGLVKSNLXSDNTP---

---y*inm**q*clyfrcmyriwl*alyiywlyely*wrlfhysrym*slwl*fhw*w*m
llhsfrm****pmy*rsllifwglll*ktyqlynpnpnsnsssnsnsy*sfywc**mrll
p*rsilfidfwt*kmfhck*ww*rysrgnywlswcnnwytninrwwyrslh*iryr*stf
m**tsl*ewngmscy*wnsrmftikiqmfrlfrssl*ktrwknmfyh*kskl*tky*rm*
rxfll*iysnl*iinqnf*nk*y

Frame B:
n*kiyiyflkfkkyiink***niyify*yflycf*k*ihkiqfc*mh*fmiklhqeimif
kfllxevlqkg**nlixvliihq---

---TESTCDDNDACTSDVCTEYGCEHYTYTGCMNCTNGGCFTTPDTCNHYGCNFTGDGKC
FFTHLECDDNDPCTKDHCLYSGDCYYEKLTNCTTPTPTQTPPPTQTPTNHSIGVNECDCC
PEGQYCLLIFGHERCFIANDGGDGIPEETIGCPGVTTGTPTSTDGGTGHYTESGTGNPHL
CDRHHCRSGMECHVINGIPECLPSKYKCLDCLDLHCEKQGGKTCFTIENQNYKPNIKGCK
DXSCCKYTPTCR*likifkinni

Frame C:
ikkyiyif*nlknil*inndeiyiyfiniffivfenkftkynfvecinl*snsikk**fs
nsfsxryckrvski*fxf**yt---

---lnqhvmtmmlvlqmyvqnmvvsiihilvv*ivlmevvsllqihviimvvislvmvna
ssli*nvmimthvlkiiayilgivimknlpivqpqpqlklllqlkllliillvlmnaiva
lkvnivy*fldmkdvslqmmvvtvfqrkllvvlv*qlvhqhqqmvvqvttlnqvqvihiy
vidiivgvewnvmllmefqnvyhqntnv*iv*ifivknkvekhvlplkikiinqilkdvk
xilvvnilqlvdn*skflk*iis
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM441 (CHM441Q) /CSM/CH/CHM4-B/CHM441Q.Seq.d/                       1836   0.0
AHH101 (AHH101Q) /CSM/AH/AHH1-A/AHH101Q.Seq.d/                       1544   0.0
AHL540 (AHL540Q) /CSM/AH/AHL5-B/AHL540Q.Seq.d/                       1540   0.0
AHE468 (AHE468Q) /CSM/AH/AHE4-C/AHE468Q.Seq.d/                       1540   0.0
AHE429 (AHE429Q) /CSM/AH/AHE4-B/AHE429Q.Seq.d/                       1540   0.0
AHD283 (AHD283Q) /CSM/AH/AHD2-D/AHD283Q.Seq.d/                       1536   0.0
AHK543 (AHK543Q) /CSM/AH/AHK5-B/AHK543Q.Seq.d/                       1534   0.0
AHH741 (AHH741Q) /CSM/AH/AHH7-B/AHH741Q.Seq.d/                       1532   0.0
AHL890 (AHL890Q) /CSM/AH/AHL8-D/AHL890Q.Seq.d/                       1530   0.0
AHC464 (AHC464Q) /CSM/AH/AHC4-C/AHC464Q.Seq.d/                       1530   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG520436|BG520436.1 ps16d04.y2 Trichinella spiralis ML CMVsport jasmer Trichinellaspiralis cDNA 5', mRNA sequence.    40   2e-05  2
BG322108|BG322108.1 ps16d04.y1 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5', mRNA sequence.    40   2e-05  2
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    32   6e-05  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   7e-05  17
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32   1e-04  17
AL596091|AL596091.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-125E12.    50   2e-04  6
AL589678|AL589678.9 Human DNA sequence from clone RP11-74C3 on chromosome 9.    50   2e-04  6
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   2e-04  14
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    58   3e-04  1
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   7e-04  20
dna update 2005. 4.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                489   e-137
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                251   3e-65
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 67   1e-09
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    63   1e-08
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    63   1e-08
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    60   9e-08
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    57   1e-06
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 54   1e-05
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    52   2e-05
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 52   3e-05
protein update 2009. 4. 8
PSORT 

 psg: 0.99  gvh: 0.78  alm: 0.51  top: 0.47  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for CHM441 is exc
5' end seq. ID CHM441F
5' end seq. 
>CHM441F.Seq
TAATTAAAAAATATATATATATTTTTTAAAATTTAAAAAATATATTATAAATAAATAATG
ATGAAATATATATATATTTTATTAATATTTTCTTTATTGTTTTTGAAAATAAATTCACAA
AATACAATTTTGTTGAATGCATTAATTTATGATCAAACTCCATCAAGAAATAATGATTTT
CAAATTCCTTCTCCANGAGGTATTGCAAAAGGGTTAGTAAAATCTAATTTANGTTCTGAT
AATACACCAGNNNNNNNNNN
Length of 5' end seq. 260
3' end seq. ID CHM441Z
3' end seq. 
>CHM441Z.Seq
NNNNNNNNNNTACTGAATCAACATGTGATGACAATGATGCTTGTACTTCAGATGTATGTA
CAGAATATGGTTGTGAGCATTATACATATACTGGTTGTATGAATTGTACTAATGGAGGTT
GTTTCACTACTCCAGATACATGTAATCATTATGGTTGTAATTTCACTGGTGATGGTAAAT
GCTTCTTCACTCATTTAGAATGTGATGATAATGACCCATGTACTAAAGATCATTGCTTAT
ATTCTGGGGATTGTTATTATGAAAAACTTACCAATTGTACAACCCCAACCCCAACTCAAA
CTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGGTGTTAATGAATGCGATTGTT
GCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGAAAGATGTTTCATTGCAAATG
ATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCCTGGTGTAACAACTGGTACAC
CAACATCAACAGATGGTGGTACAGGTCACTACACTGAATCAGGTACAGGTAATCCACATT
TATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCATGTTATTAATGGAATTCCAG
AATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGATCTTCATTGTGAAAAACAAG
GTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAAACCAAATATTAAAGGATGTA
AAGATNATTCTTGTTGTAAATATACTCCAACTTGTAGATAATTAATCAAAATTTTTAAAA
TAAATAATATCC
Length of 3' end seq. 792
Connected seq. ID CHM441P
Connected seq. 
>CHM441P.Seq
TAATTAAAAAATATATATATATTTTTTAAAATTTAAAAAATATATTATAAATAAATAATG
ATGAAATATATATATATTTTATTAATATTTTCTTTATTGTTTTTGAAAATAAATTCACAA
AATACAATTTTGTTGAATGCATTAATTTATGATCAAACTCCATCAAGAAATAATGATTTT
CAAATTCCTTCTCCANGAGGTATTGCAAAAGGGTTAGTAAAATCTAATTTANGTTCTGAT
AATACACCAG----------TACTGAATCAACATGTGATGACAATGATGCTTGTACTTCA
GATGTATGTACAGAATATGGTTGTGAGCATTATACATATACTGGTTGTATGAATTGTACT
AATGGAGGTTGTTTCACTACTCCAGATACATGTAATCATTATGGTTGTAATTTCACTGGT
GATGGTAAATGCTTCTTCACTCATTTAGAATGTGATGATAATGACCCATGTACTAAAGAT
CATTGCTTATATTCTGGGGATTGTTATTATGAAAAACTTACCAATTGTACAACCCCAACC
CCAACTCAAACTCCTCCTCCAACTCAAACTCCTACTAATCATTCTATTGGTGTTAATGAA
TGCGATTGTTGCCCTGAAGGTCAATATTGTTTATTGATTTTTGGACATGAAAGATGTTTC
ATTGCAAATGATGGTGGTGACGGTATTCCAGAGGAAACTATTGGTTGTCCTGGTGTAACA
ACTGGTACACCAACATCAACAGATGGTGGTACAGGTCACTACACTGAATCAGGTACAGGT
AATCCACATTTATGTGATAGACATCATTGTAGGAGTGGAATGGAATGTCATGTTATTAAT
GGAATTCCAGAATGTTTACCATCAAAATACAAATGTTTAGATTGTTTAGATCTTCATTGT
GAAAAACAAGGTGGAAAAACATGTTTTACCATTGAAAATCAAAATTATAAACCAAATATT
AAAGGATGTAAAGATNATTCTTGTTGTAAATATACTCCAACTTGTAGATAATTAATCAAA
ATTTTTAAAATAAATAATATCC
Length of connected seq. 1032
Full length Seq ID -
Full length Seq. -
Length of full length seq. -