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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN535
Library CH
(Link to library)
Clone ID CHN535
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11872-1
Original site URL
Representative seq. ID CHN535P
(Link to Original site)
Representative DNA sequence 
>CHN535 (CHN535Q) /CSM/CH/CHN5-B/CHN535Q.Seq.d/
GTAAATATAAATATAAATTGGATTTATTTAAAACAATTTTTTAATTTTCAAAAATAGTAA
ACAATGAAAGGTAAAAGTGTTGTAATTGCAATTGATTTTGGTACTTCATGTTCTGGGTTT
GCATTTGTTTTCCCCCAAGATATTTCAGAGACAGTTTATTGCACTGAAACTTGGGGTGGG
TCATGTTCAATAAATGTAAAAACTTTGACGCAAATTGTGTTGGATGAAAAAAAAAAATTT
GTTGCATTTGGTTACNAGXXXXXXXXXXTGTGCATTACATGTAAAATCGGGAAAGGAAAT
TAGACATTCTTACGACTTTGCACTCGATGAAGCAGAATCATTAAGAAGAAATAGATTACG
TCAAGAAAAGAATAAACCCCCAGTGGTACAACTTTGCCTCATGATGGATTGCACTGGTAG
TATGGGCTCATGGATTAAAGAAAGTAAAGAAAAAATTATTTCATTAACTGGATTATTAGC
CAGCTCATATGTAGGTTTGGAATTGAATGCAAGTTTCATAGGTTATCGTGATATTACTGA
TTCCAATAGATTTGAGGTTGTACCATTTACAACGGATATGGGATATCTTGCTTCCAAAAT
TAATGAAGCAGTTCCAACAGGTGGTGGTGATACTCCAGAAGATATTACAGGTGCTTTTTT
ACAAGTAAATAACCTATCGTGGAAACCAACTCATACTAAACTTGTTGTCCATGTAGGCGA
TGCACCATGCCACGGCAAAAAATATCATAATTGTGTTGATTCATATCCAGATGGTGACCC
AAGTGGTTTGGTTCCAGAAAAACTTTTACAAAAATTATCTTCAAAATCAATTGACTATTA
TTTCATTAAAATCACATCTCAAACTGATAAGATGATTGAAATTTTTAGAAAGTCATATGA
CTCACCTCAAAAAAAGATTGTAGTTCATGACCTGGATCAGATGTCTCAAAATTATTACCT
TCTTTAGTAACTTGTTCAAACCTCATTACCAGATTTACAAATAAAAAATAATAANATCCC
TTAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
vnininwiylkqffnfqk**TMKGKSVVIAIDFGTSCSGFAFVFPQDISETVYCTETWGG
SCSINVKTLTQIVLDEKKKFVAFGYX---

---CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPVVQLCLMMDCTGSMGSWIK
ESKEKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPT
GGGDTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPE
KLLQKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLDQMSQNYYLL**lvq
tslpdlqiknnxip*k
Translated Amino Acid sequence (All Frames) 
Frame A:
vnininwiylkqffnfqk**TMKGKSVVIAIDFGTSCSGFAFVFPQDISETVYCTETWGG
SCSINVKTLTQIVLDEKKKFVAFGYX---

---CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPVVQLCLMMDCTGSMGSWIK
ESKEKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPT
GGGDTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPE
KLLQKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLDQMSQNYYLL**lvq
tslpdlqiknnxip*k

Frame B:
*i*i*igfi*nnflifknskq*kvkvl*lqlilvlhvlglhlfspkifqrqfialklgvg
hvq*m*kl*rklcwmkkknllhlvt---

---vhym*nrerkldilttlhsmkqnh*eeidyvkkrinpqwynfas*wialvvwahglk
kvkkklfh*ldy*pahm*vwn*mqvs*vivillipidlrlyhlqriwdillpklmkqfqq
vvvilqkilqvlfyk*ityrgnqlilnllsm*amhhatakniiivlihiqmvtqvvwfqk
nfyknylqnqltiislkshlklir*lkfleshmthlkkrl*fmtwirclkiitffsnlfk
phyqiyk*kiixslk

Frame C:
kykykldlfktif*fskivnner*kccncn*fwyfmfwvcicfppryfrdsllh*nlgwv
mfnkcknfdancvg*kkkicciwlx---

---citckigkgn*tflrlctr*sriikkk*itsrke*tpsgttlphdglhw*yglmd*r
k*rknyfinwiisqlicrfgieckfhrls*yy*fq*i*gctiyngygiscfqn**sssnr
ww*ysrryyrcfftsk*pivetnsy*tccpcrrctmprqkis*lc*fisrw*pkwfgsrk
tftkiifkin*llfh*nhisn**dd*nf*kvi*ltskkdcss*pgsdvskllpslvtcsn
litrftnkk**xplk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN535 (CHN535Q) /CSM/CH/CHN5-B/CHN535Q.Seq.d/                       1685   0.0
VHM352 (VHM352Q) /CSM/VH/VHM3-C/VHM352Q.Seq.d/                       1285   0.0
VSB313 (VSB313Q) /CSM/VS/VSB3-A/VSB313Q.Seq.d/                         44   0.004
SLG837 (SLG837Q) /CSM/SL/SLG8-B/SLG837Q.Seq.d/                         38   0.26
AHE128 (AHE128Q) /CSM/AH/AHE1-B/AHE128Q.Seq.d/                         38   0.26
VSK194 (VSK194Q) /CSM/VS/VSK1-D/VSK194Q.Seq.d/                         36   1.0
VFM196 (VFM196Q) /CSM/VF/VFM1-D/VFM196Q.Seq.d/                         36   1.0
VFK815 (VFK815Q) /CSM/VF/VFK8-A/VFK815Q.Seq.d/                         36   1.0
VFE825 (VFE825Q) /CSM/VF/VFE8-B/VFE825Q.Seq.d/                         36   1.0
VFC269 (VFC269Q) /CSM/VF/VFC2-C/VFC269Q.Seq.d/                         36   1.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.  1261   0.0    7
CR956372|CR956372.1 Wallaby DNA sequence *** SEQUENCING IN PROGRESS *** from clone  GRWB-15A6.    38   0.054  5
CR533579|CR533579.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-232J20.    44   0.063  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.075  13
AC158345|AC158345.7 Mus musculus chromosome 7 clone RP23-271M19 map 7, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    50   0.085  1
AC163335|AC163335.2 Mus musculus chromosome 7 clone RP24-149G13 map 7, WORKING DRAFT SEQUENCE, 8 unordered pieces.    50   0.085  1
AC073498|AC073498.2 Homo sapiens chromosome 7 clone RP11-242J14, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40   0.18   8
AC163005|AC163005.1 Callicebus moloch clone LB5-96I1, WORKING DRAFT SEQUENCE, 12 unordered pieces.    38   0.19   2
AC008809|AC008809.6 Homo sapiens chromosome 5 clone CTD-2093D7, complete sequence.    48   0.25   2
AC064867|AC064867.1 Homo sapiens chromosome 1 clone RP11-450H13, WORKING DRAFT SEQUENCE, 43 unordered pieces.    44   0.26   9
dna update 2005. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_32(AC117176|pid:none) Dictyostelium discoideum chromoso...   454   e-126
CP000283_133(CP000283|pid:none) Rhodopseudomonas palustris BisB5...    70   9e-11
AC115592_24(AC115592|pid:none) Dictyostelium discoideum chromoso...    70   1e-10
CP000463_230(CP000463|pid:none) Rhodopseudomonas palustris BisA5...    69   2e-10
AE017356_24(AE017356|pid:none) Cryptococcus neoformans var. neof...    68   6e-10
CP001096_569(CP001096|pid:none) Rhodopseudomonas palustris TIE-1...    65   4e-09
CP000155_907(CP000155|pid:none) Hahella chejuensis KCTC 2396, co...    59   3e-07
CU633438_196(CU633438|pid:none) Podospora anserina genomic DNA c...    56   2e-06
AC116977_41(AC116977|pid:none) Dictyostelium discoideum chromoso...    55   3e-06
AC116305_104(AC116305|pid:none) Dictyostelium discoideum chromos...    54   6e-06
protein update 2009. 4. 9
PSORT 

 psg: 0.84  gvh: 0.50  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system

>> prediction for CHN535 is cyt
5' end seq. ID CHN535F
5' end seq. 
>CHN535F.Seq
GTAAATATAAATATAAATTGGATTTATTTAAAACAATTTTTTAATTTTCAAAAATAGTAA
ACAATGAAAGGTAAAAGTGTTGTAATTGCAATTGATTTTGGTACTTCATGTTCTGGGTTT
GCATTTGTTTTCCCCCAAGATATTTCAGAGACAGTTTATTGCACTGAAACTTGGGGTGGG
TCATGTTCAATAAATGTAAAAACTTTGACGCAAATTGTGTTGGATGAAAAAAAAAAATTT
GTTGCATTTGGTTACNAGNNNNNNNNNN
Length of 5' end seq. 268
3' end seq. ID CHN535Z
3' end seq. 
>CHN535Z.Seq
NNNNNNNNNNTGTGCATTACATGTAAAATCGGGAAAGGAAATTAGACATTCTTACGACTT
TGCACTCGATGAAGCAGAATCATTAAGAAGAAATAGATTACGTCAAGAAAAGAATAAACC
CCCAGTGGTACAACTTTGCCTCATGATGGATTGCACTGGTAGTATGGGCTCATGGATTAA
AGAAAGTAAAGAAAAAATTATTTCATTAACTGGATTATTAGCCAGCTCATATGTAGGTTT
GGAATTGAATGCAAGTTTCATAGGTTATCGTGATATTACTGATTCCAATAGATTTGAGGT
TGTACCATTTACAACGGATATGGGATATCTTGCTTCCAAAATTAATGAAGCAGTTCCAAC
AGGTGGTGGTGATACTCCAGAAGATATTACAGGTGCTTTTTTACAAGTAAATAACCTATC
GTGGAAACCAACTCATACTAAACTTGTTGTCCATGTAGGCGATGCACCATGCCACGGCAA
AAAATATCATAATTGTGTTGATTCATATCCAGATGGTGACCCAAGTGGTTTGGTTCCAGA
AAAACTTTTACAAAAATTATCTTCAAAATCAATTGACTATTATTTCATTAAAATCACATC
TCAAACTGATAAGATGATTGAAATTTTTAGAAAGTCATATGACTCACCTCAAAAAAAGAT
TGTAGTTCATGACCTGGATCAGATGTCTCAAAATTATTACCTTCTTTAGTAACTTGTTCA
AACCTCATTACCAGATTTACAAATAAAAAATAATAANATCCCTTAAAAA
Length of 3' end seq. 769
Connected seq. ID CHN535P
Connected seq. 
>CHN535P.Seq
GTAAATATAAATATAAATTGGATTTATTTAAAACAATTTTTTAATTTTCAAAAATAGTAA
ACAATGAAAGGTAAAAGTGTTGTAATTGCAATTGATTTTGGTACTTCATGTTCTGGGTTT
GCATTTGTTTTCCCCCAAGATATTTCAGAGACAGTTTATTGCACTGAAACTTGGGGTGGG
TCATGTTCAATAAATGTAAAAACTTTGACGCAAATTGTGTTGGATGAAAAAAAAAAATTT
GTTGCATTTGGTTACNAG----------TGTGCATTACATGTAAAATCGGGAAAGGAAAT
TAGACATTCTTACGACTTTGCACTCGATGAAGCAGAATCATTAAGAAGAAATAGATTACG
TCAAGAAAAGAATAAACCCCCAGTGGTACAACTTTGCCTCATGATGGATTGCACTGGTAG
TATGGGCTCATGGATTAAAGAAAGTAAAGAAAAAATTATTTCATTAACTGGATTATTAGC
CAGCTCATATGTAGGTTTGGAATTGAATGCAAGTTTCATAGGTTATCGTGATATTACTGA
TTCCAATAGATTTGAGGTTGTACCATTTACAACGGATATGGGATATCTTGCTTCCAAAAT
TAATGAAGCAGTTCCAACAGGTGGTGGTGATACTCCAGAAGATATTACAGGTGCTTTTTT
ACAAGTAAATAACCTATCGTGGAAACCAACTCATACTAAACTTGTTGTCCATGTAGGCGA
TGCACCATGCCACGGCAAAAAATATCATAATTGTGTTGATTCATATCCAGATGGTGACCC
AAGTGGTTTGGTTCCAGAAAAACTTTTACAAAAATTATCTTCAAAATCAATTGACTATTA
TTTCATTAAAATCACATCTCAAACTGATAAGATGATTGAAATTTTTAGAAAGTCATATGA
CTCACCTCAAAAAAAGATTGTAGTTCATGACCTGGATCAGATGTCTCAAAATTATTACCT
TCTTTAGTAACTTGTTCAAACCTCATTACCAGATTTACAAATAAAAAATAATAANATCCC
TTAAAAA
Length of connected seq. 1017
Full length Seq ID -
Full length Seq. -
Length of full length seq. -