>CHN571 (CHN571Q) /CSM/CH/CHN5-C/CHN571Q.Seq.d/
GTGCGTAGGATAGAAAAAAACGTCAAAATTCCTTTTATTTATAAATAAACCAAAAAACAG
GATATTTGTTATTTTATAATGAGTAAAAGAAAGCACGAATCATCAGATTCAAATAAAAAA
GCAATGAAAAAACAACAAAATAAAATAGAAGAAGAAGAAGAAGAAATTACAAATACTACA
ACTACAACTACAACCACAAATAATAATTATAATAATATAAAATCAAATTTAACAATTGAT
CAATGGATACCAAAAAAAGAAACATTTTCAAAACGTTATTATGAAATTTTAGAAAAGAGA
AAAGAGTTACCAGTTTGGAAACAAAAAGAGGATTTTATAAAAGTTATTAAAGAGAATCAA
GTTGTAATTTTAGTTGGTGAAACAGGTTCAGGTAAAACCACACAAATTCCACAATTTGTA
GTTGATGCAGGATTAATTAGACCAGGTAAAATGGTAGGTGTTACACAACCAAGAAGAGTA
GCAGCAATAAGTGTAGCAAAAAGAGTATCAGAGGAAATGGATTTTGAATTGGGTGAAGAN
GTTGGTTATTCAATTCGTTTXXXXXXXXXXTACGTTCCAAATTTAGCTTCAGTTGTATTA
CAACTTTTGAAATTGGGTGTTGTCGATTTAGTACATTTCGATTTTATGGATCCACCAGTA
CCAGATACATTAATTCGTGCATTGGAAGTATTACATTATCTTGGTGCATTTGATCATTTC
GATGGTGATCATCTTACAATGTTAAATGTTTATCATAGTTTTAAAAAGAATGGTGAAGAT
CCAACTTGGTGTTACGATAATTTCCTCAATCATCGTGCCATTAAACAAGCCGATAGTGTC
CGTTCACAATTGGCTAGAATCTTAACTCGTTTCAAATTACCATTGGTTAGTGGTGATGTA
AATAGTAAATTTTATTATGAAAATATAAAGAAATGTATCGCTGCTGGCTTCTTTATGCAA
GTGGCTAAATGCGAGAAAAAAAATATCTACTTCACCCTAGGTGATGAACAATCTGTAATC
TTTCATCCTTCAACTGGTTTAACTCGTCGTCCTGAATTTTGTATCTACAATGAATTTGTT
TTAACCTCTGAAAATTATATTAGAACAATCACTGATGTTAAATTTGATTGGTTATTAGAA
TTGGCTCCAAGTTATTTTAAACAAAAATCTTTCCCTAAAAAAACAAAAGAAACAATTCAA
AGAGCTCAAAGATTATATAGTGGTAGTAGTAGGGTAGTAGTAGGGTAGTAATAAAAAATA
AATAAATAATAATTTAAAAATAAA

vrrieknvkipfiyk*TKKQDICYFIMSKRKHESSDSNKKAMKKQQNKIEEEEEEITNTT
TTTTTTNNNYNNIKSNLTIDQWIPKKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQ
VVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEX
VGYSIR---

---YVPNLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGAFDHFDGDHLTM
LNVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYE
NIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTRRPEFCIYNEFVLTSENYI
RTITDVKFDWLLELAPSYFKQKSFPKKTKETIQRAQRLYSGSSRVVVG***kink**fkn
k

Frame A:
vrrieknvkipfiyk*TKKQDICYFIMSKRKHESSDSNKKAMKKQQNKIEEEEEEITNTT
TTTTTTNNNYNNIKSNLTIDQWIPKKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQ
VVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEX
VGYSIR---

---YVPNLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGAFDHFDGDHLTM
LNVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYE
NIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTRRPEFCIYNEFVLTSENYI
RTITDVKFDWLLELAPSYFKQKSFPKKTKETIQRAQRLYSGSSRVVVG***kink**fkn
k

Frame B:
cvg*kktskfllfinkpknrifvil**vkestnhqiqikkq*knnkik*kkkkkklqilq
lqlqpqiiiiii*nqi*qlingyqkkkhfqnvimkf*kreksyqfgnkkril*kllkrik
l*f*lvkqvqvkphkfhnl*lmqd*ldqvkw*vlhnqee*qq*v*qkeyqrkwilnwvkx
lviqfv---

---tfqi*lqlyynf*nwvlsi*yisilwihqyqih*fvhwkyyiilvhliismviilqc
*mfiivlkrmvkiqlgvtiissiivplnkpivsvhnwles*lvsnyhwlvvm*ivnfimk
i*rnvsllaslckwlnarkkistsp*vmnnl*sfilqlv*lvvlnfvstmnlf*plkiil
eqslmlnligy*nwlqvilnknlslkkqkkqfkelkdyivvvvg***gsnkk*innnlki

Frame C:
a*drkkrqnsfyl*inqktgyllfyne*kkariirfk*ksnekttk*nrrrrrrnykyyn
ynynhk**l**ykikfnn*smdtkkrnifktll*nfrkekrvtsletkrgfyksy*ress
cnfsw*nrfr*nhtnstics*crin*tr*ngrcyttkksssnkcskksirgngf*ig*rx
wlfnsf---

---rskfsfscittfeigccrfstfrfygststryinscigsitlswci*sfrw*ssynv
kcls*f*kew*rsnlvlr*fpqssch*tsr*cpftig*nlnsfqitig*w*ck**ill*k
ykemyrcwllyasg*mrekkyllhpr**ticnlssfnwfnsss*ilylq*icfnl*kly*
nnh*c*i*lvirigsklf*tkifp*knkrnnsksskii*w***gssrvviknk*iii*k*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN571 (CHN571Q) /CSM/CH/CHN5-C/CHN571Q.Seq.d/                       1883   0.0
VHJ427 (VHJ427Q) /CSM/VH/VHJ4-B/VHJ427Q.Seq.d/                        918   0.0
CHS333 (CHS333Q) /CSM/CH/CHS3-B/CHS333Q.Seq.d/                        918   0.0
CHR355 (CHR355Q) /CSM/CH/CHR3-C/CHR355Q.Seq.d/                        918   0.0
CHK583 (CHK583Q) /CSM/CH/CHK5-D/CHK583Q.Seq.d/                        918   0.0
CHI803 (CHI803Q) /CSM/CH/CHI8-A/CHI803Q.Seq.d/                        918   0.0
CHI582 (CHI582Q) /CSM/CH/CHI5-D/CHI582Q.Seq.d/                        918   0.0
CHI233 (CHI233Q) /CSM/CH/CHI2-B/CHI233Q.Seq.d/                        918   0.0
CHI155 (CHI155Q) /CSM/CH/CHI1-C/CHI155Q.Seq.d/                        918   0.0
CHF541 (CHF541Q) /CSM/CH/CHF5-B/CHF541Q.Seq.d/                        918   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z72642|Z72642.1 S.cerevisiae chromosome VII reading frame ORF YGL120c.    66   9e-17  4
U41851|U41851.1 Saccharomyces cerevisiae splicing factor Prp43p (PRP43) gene, complete cds.    66   9e-17  4
AX830412|AX830412.1 Sequence 1132 from Patent WO03072602.          66   8e-16  3
AX819382|AX819382.1 Sequence 1132 from Patent EP1338608.           66   8e-16  3
AX595292|AX595292.1 Sequence 946 from Patent EP1258494.            66   8e-16  3
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    48   3e-11  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    70   5e-11  22
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    34   2e-09  17
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   2e-09  27
AX489029|AX489029.1 Sequence 6329 from Patent WO02053728.          50   3e-09  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NJ4) RecName: Full=Putative pre-mRNA-splicing factor ATP-dep...   356   8e-97
CR954201_307(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   201   4e-50
BT034008_1(BT034008|pid:none) Zea mays full-length cDNA clone ZM...   200   8e-50
(Q20875) RecName: Full=Putative pre-mRNA-splicing factor ATP-dep...   200   1e-49
EU961300_1(EU961300|pid:none) Zea mays clone 234415 pre-mRNA-spl...   199   2e-49
AC153352_12(AC153352|pid:none) Medicago truncatula clone mth2-10...   198   3e-49
AY813717_1(AY813717|pid:none) Schistosoma japonicum SJCHGC06976 ...   198   4e-49
AL162507_1(AL162507|pid:none) Arabidopsis thaliana DNA chromosom...   195   2e-48
(O22899) RecName: Full=Probable pre-mRNA-splicing factor ATP-dep...   192   2e-47
AB001636_1(AB001636|pid:none) Homo sapiens mRNA for ATP-dependen...   192   3e-47

 psg: 0.82  gvh: 0.26  alm: 0.29  top: 0.63  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.14  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHN571 is nuc

>CHN571F.Seq
GTGCGTAGGATAGAAAAAAACGTCAAAATTCCTTTTATTTATAAATAAACCAAAAAACAG
GATATTTGTTATTTTATAATGAGTAAAAGAAAGCACGAATCATCAGATTCAAATAAAAAA
GCAATGAAAAAACAACAAAATAAAATAGAAGAAGAAGAAGAAGAAATTACAAATACTACA
ACTACAACTACAACCACAAATAATAATTATAATAATATAAAATCAAATTTAACAATTGAT
CAATGGATACCAAAAAAAGAAACATTTTCAAAACGTTATTATGAAATTTTAGAAAAGAGA
AAAGAGTTACCAGTTTGGAAACAAAAAGAGGATTTTATAAAAGTTATTAAAGAGAATCAA
GTTGTAATTTTAGTTGGTGAAACAGGTTCAGGTAAAACCACACAAATTCCACAATTTGTA
GTTGATGCAGGATTAATTAGACCAGGTAAAATGGTAGGTGTTACACAACCAAGAAGAGTA
GCAGCAATAAGTGTAGCAAAAAGAGTATCAGAGGAAATGGATTTTGAATTGGGTGAAGAN
GTTGGTTATTCAATTCGTTTNNNNNNNNNN

>CHN571Z.Seq
NNNNNNNNNNTACGTTCCAAATTTAGCTTCAGTTGTATTACAACTTTTGAAATTGGGTGT
TGTCGATTTAGTACATTTCGATTTTATGGATCCACCAGTACCAGATACATTAATTCGTGC
ATTGGAAGTATTACATTATCTTGGTGCATTTGATCATTTCGATGGTGATCATCTTACAAT
GTTAAATGTTTATCATAGTTTTAAAAAGAATGGTGAAGATCCAACTTGGTGTTACGATAA
TTTCCTCAATCATCGTGCCATTAAACAAGCCGATAGTGTCCGTTCACAATTGGCTAGAAT
CTTAACTCGTTTCAAATTACCATTGGTTAGTGGTGATGTAAATAGTAAATTTTATTATGA
AAATATAAAGAAATGTATCGCTGCTGGCTTCTTTATGCAAGTGGCTAAATGCGAGAAAAA
AAATATCTACTTCACCCTAGGTGATGAACAATCTGTAATCTTTCATCCTTCAACTGGTTT
AACTCGTCGTCCTGAATTTTGTATCTACAATGAATTTGTTTTAACCTCTGAAAATTATAT
TAGAACAATCACTGATGTTAAATTTGATTGGTTATTAGAATTGGCTCCAAGTTATTTTAA
ACAAAAATCTTTCCCTAAAAAAACAAAAGAAACAATTCAAAGAGCTCAAAGATTATATAG
TGGTAGTAGTAGGGTAGTAGTAGGGTAGTAATAAAAAATAAATAAATAATAATTTAAAAA
TAAA

>CHN571P.Seq
GTGCGTAGGATAGAAAAAAACGTCAAAATTCCTTTTATTTATAAATAAACCAAAAAACAG
GATATTTGTTATTTTATAATGAGTAAAAGAAAGCACGAATCATCAGATTCAAATAAAAAA
GCAATGAAAAAACAACAAAATAAAATAGAAGAAGAAGAAGAAGAAATTACAAATACTACA
ACTACAACTACAACCACAAATAATAATTATAATAATATAAAATCAAATTTAACAATTGAT
CAATGGATACCAAAAAAAGAAACATTTTCAAAACGTTATTATGAAATTTTAGAAAAGAGA
AAAGAGTTACCAGTTTGGAAACAAAAAGAGGATTTTATAAAAGTTATTAAAGAGAATCAA
GTTGTAATTTTAGTTGGTGAAACAGGTTCAGGTAAAACCACACAAATTCCACAATTTGTA
GTTGATGCAGGATTAATTAGACCAGGTAAAATGGTAGGTGTTACACAACCAAGAAGAGTA
GCAGCAATAAGTGTAGCAAAAAGAGTATCAGAGGAAATGGATTTTGAATTGGGTGAAGAN
GTTGGTTATTCAATTCGTTT----------TACGTTCCAAATTTAGCTTCAGTTGTATTA
CAACTTTTGAAATTGGGTGTTGTCGATTTAGTACATTTCGATTTTATGGATCCACCAGTA
CCAGATACATTAATTCGTGCATTGGAAGTATTACATTATCTTGGTGCATTTGATCATTTC
GATGGTGATCATCTTACAATGTTAAATGTTTATCATAGTTTTAAAAAGAATGGTGAAGAT
CCAACTTGGTGTTACGATAATTTCCTCAATCATCGTGCCATTAAACAAGCCGATAGTGTC
CGTTCACAATTGGCTAGAATCTTAACTCGTTTCAAATTACCATTGGTTAGTGGTGATGTA
AATAGTAAATTTTATTATGAAAATATAAAGAAATGTATCGCTGCTGGCTTCTTTATGCAA
GTGGCTAAATGCGAGAAAAAAAATATCTACTTCACCCTAGGTGATGAACAATCTGTAATC
TTTCATCCTTCAACTGGTTTAACTCGTCGTCCTGAATTTTGTATCTACAATGAATTTGTT
TTAACCTCTGAAAATTATATTAGAACAATCACTGATGTTAAATTTGATTGGTTATTAGAA
TTGGCTCCAAGTTATTTTAAACAAAAATCTTTCCCTAAAAAAACAAAAGAAACAATTCAA
AGAGCTCAAAGATTATATAGTGGTAGTAGTAGGGTAGTAGTAGGGTAGTAATAAAAAATA
AATAAATAATAATTTAAAAATAAA